Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

299397 .. 300715

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCTAAGCCAAGGTTGGAGGGCAAGGTGGCCCTTATCACAGGTGCAGCCGGCGGGATTGGTGAGGAGGCAGTGAGACTATTTGCAGAAAATGGAGCCTTTGTTGTTGCTGCTGACATTCAAGATGAATTGGGTCCTCACGTTGTCGCCTCAATAGGCTCCGAAAGAGTTAGCTATTGCCACTGTGATGTAAGAGATGAAAACCAAGTTGAGAAAACAGTGAACTACACACTGGACAAATATGGCAGCCTAGACATTTTGTTCAGCAATGCAGGTGTCATGGGTCCAATGACTGGCATATTAGACCTTGACATTCAAGGCTTTGACAACACCATGGCCACAAACGTTCGCGGTGTTGCTGCAACAATCAAGCACGCGGCGCGTGCCATGGTGGCTCGAAAGGTACATGGTTCAATCATATGCACAACAAGTGTGGCAGCTTCTCTTGGAGGCACAGCTCCACATGCTTACACAACTTCAAAACATGCTCTGTTGGGTTTGGTGAGAGGAGCTTGCAGTGAGCTTGGGGCTTATGGGATCAGAGTGAATAGCATTTCCCCATTTGGAGTTGCAACCCCTCTTTCATGTAAAGCTTACAATTTGCAGCCAAGTGAGGTGGAGGCTAATAGCTCTGCCATAGCCAACTTGAAGGGCATTGTGTTGAAGGCTAGGCATGTGGCGGAGGCTGCTCTGTTTCTTGCTAGTGATGAATCTGTTTATGTTAGTGGACACAACTTGGTTGTCGATGGAGGCTTCACGGTGGTTGATCATAGTTATTCGGCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

263

Amino Acids

27.26

Weight (kDa)

5.97

Isoelectric Point (pI)

20.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccII	CGCG	3 cut(s)	351, 377, 382
AciI	CCGC	4 cut(s)	54, 351, 377, 680
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	2 cut(s)	336, 780
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	6 cut(s)	122, 317, 414, 480, 649, 664
AluBI	AGCT	7 cut(s)	174, 440, 458, 512, 523, 593, 630
AluI	AGCT	7 cut(s)	174, 440, 458, 512, 523, 593, 630
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	3 cut(s)	30, 336, 780
ApeKI	GCWGC	7 cut(s)	47, 110, 246, 359, 437, 604, 686
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	3 cut(s)	31, 134, 284
AsuHPI	GGTGA	2 cut(s)	74, 514
AvaII	GGWCC	2 cut(s)	134, 284
BalI	TGGCCA	1 cut(s)	338
BbvI	GCAGC	7 cut(s)	59, 97, 258, 346, 449, 616, 673
BccI	CCATC	1 cut(s)	740
BclI	TGATCA	1 cut(s)	766
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	4 cut(s)	251, 669, 702, 787
BfuAI	ACCTGC	1 cut(s)	263
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	8 cut(s)	48, 111, 247, 360, 378, 438, 605, 687
BlsI	GCNGC	8 cut(s)	49, 112, 248, 361, 379, 439, 606, 688
Bme18I	GGWCC	2 cut(s)	134, 284
BmgT120I	GGNCC	3 cut(s)	31, 134, 284
BmiI	GGNNCC	4 cut(s)	97, 135, 160, 285
BsaJI	CCNNGG	3 cut(s)	11, 333, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	237, 298
Bse3DI	GCAATG	1 cut(s)	274
BseDI	CCNNGG	3 cut(s)	11, 333, 387
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	274
BseNI	ACTGG	2 cut(s)	237, 298
BseRI	GAGGAG	2 cut(s)	80, 522
BseXI	GCAGC	7 cut(s)	59, 97, 258, 346, 449, 616, 673
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	3 cut(s)	351, 377, 382
BshFI	GGCC	3 cut(s)	32, 338, 782
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	32, 338, 782
Bsp143I	GATC	2 cut(s)	537, 766
Bsp19I	CCATGG	2 cut(s)	333, 387
BspACI	CCGC	4 cut(s)	54, 351, 377, 680
BspANI	GGCC	3 cut(s)	32, 338, 782
BspFNI	CGCG	3 cut(s)	351, 377, 382
BspLI	GGNNCC	4 cut(s)	97, 135, 160, 285
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	237, 298
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	3 cut(s)	11, 333, 387
BssMI	GATC	2 cut(s)	537, 766
BssT1I	CCWWGG	3 cut(s)	11, 333, 387
Bst4CI	ACNGT	3 cut(s)	185, 220, 760
BstC8I	GCNNGC	4 cut(s)	52, 375, 384, 514
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	2 cut(s)	333, 387
BstFNI	CGCG	3 cut(s)	351, 377, 382
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	2 cut(s)	540, 769
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	537, 766
BstMWI	GCNNNNNNNGC	5 cut(s)	379, 383, 392, 464, 686
BstNSI	RCATGY	3 cut(s)	467, 488, 677
BstUI	CGCG	3 cut(s)	351, 377, 382
BstV1I	GCAGC	7 cut(s)	59, 97, 258, 346, 449, 616, 673
BsuRI	GGCC	3 cut(s)	32, 338, 782
BtgI	CCRYGG	2 cut(s)	333, 387
BtsI	GCAGTG	2 cut(s)	78, 523
BtsIMutI	CAGTG	5 cut(s)	78, 181, 225, 230, 523
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	4 cut(s)	52, 375, 384, 514
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	31, 134, 284
Csp6I	GTAC	1 cut(s)	404
CspCI	CAANNNNNGTGG	4 cut(s)	414, 449, 597, 632
CviAII	CATG	8 cut(s)	280, 334, 388, 407, 464, 485, 585, 674
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	539, 768
DpnII	GATC	2 cut(s)	537, 766
EaeI	YGGCCR	2 cut(s)	336, 780
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	3 cut(s)	11, 333, 387
Eco47I	GGWCC	2 cut(s)	134, 284
EcoO109I	RGGNCCY	1 cut(s)	134
EcoT14I	CCWWGG	3 cut(s)	11, 333, 387
ErhI	CCWWGG	3 cut(s)	11, 333, 387
FaeI	CATG	8 cut(s)	283, 337, 391, 410, 467, 488, 588, 677
FatI	CATG	8 cut(s)	279, 333, 387, 406, 463, 484, 584, 673
FauI	CCCGC	1 cut(s)	47
FauNDI	CATATG	1 cut(s)	419
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	8 cut(s)	48, 111, 247, 360, 378, 438, 605, 687
Fsp4HI	GCNGC	8 cut(s)	48, 111, 247, 360, 378, 438, 605, 687
FspBI	CTAG	4 cut(s)	251, 669, 702, 787
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	8 cut(s)	48, 111, 247, 360, 378, 438, 605, 687
HaeIII	GGCC	3 cut(s)	32, 338, 782
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	8 cut(s)	283, 337, 391, 410, 467, 488, 588, 677
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	1 cut(s)	710
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	74, 514
Hpy166II	GTNNAC	2 cut(s)	223, 728
Hpy188I	TCNGA	2 cut(s)	163, 542
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	223, 728
HpyAV	CCTTC	2 cut(s)	643, 658
HpyCH4III	ACNGT	3 cut(s)	185, 220, 760
HpyCH4IV	ACGT	2 cut(s)	141, 345
HpyCH4V	TGCA	8 cut(s)	47, 86, 272, 362, 423, 516, 572, 604
HpyF10VI	GCNNNNNNNGC	5 cut(s)	379, 383, 392, 464, 686
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	2 cut(s)	141, 345
Hsp92II	CATG	8 cut(s)	283, 337, 391, 410, 467, 488, 588, 677
HspAI	GCGC	1 cut(s)	380
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	2 cut(s)	537, 766
LmnI	GCTCC	4 cut(s)	95, 164, 463, 509
LpnPI	CCDG	5 cut(s)	27, 64, 218, 258, 279
Lsp1109I	GCAGC	7 cut(s)	59, 97, 258, 346, 449, 616, 673
MaeI	CTAG	4 cut(s)	251, 669, 702, 787
MaeII	ACGT	2 cut(s)	141, 345
MalI	GATC	2 cut(s)	539, 768
MboI	GATC	2 cut(s)	537, 766
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	2 cut(s)	128, 598
MluNI	TGGCCA	1 cut(s)	338
Mox20I	TGGCCA	1 cut(s)	338
MroNI	GCCGGC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	1 cut(s)	51
MvnI	CGCG	3 cut(s)	351, 377, 382
MwoI	GCNNNNNNNGC	5 cut(s)	379, 383, 392, 464, 686
NaeI	GCCGGC	1 cut(s)	52
NcoI	CCATGG	2 cut(s)	333, 387
NdeI	CATATG	1 cut(s)	419
NdeII	GATC	2 cut(s)	537, 766
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	8 cut(s)	283, 337, 391, 410, 467, 488, 588, 677
NlaIV	GGNNCC	4 cut(s)	97, 135, 160, 285
NspI	RCATGY	3 cut(s)	467, 488, 677
PaqCI	CACCTGC	1 cut(s)	263
PdiI	GCCGGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	710
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	8 cut(s)	49, 112, 248, 361, 379, 439, 606, 688
PpuMI	RGGWCCY	1 cut(s)	134
Psp1406I	AACGTT	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	134
PspN4I	GGNNCC	4 cut(s)	97, 135, 160, 285
PspPI	GGNCC	3 cut(s)	31, 134, 284
PspPPI	RGGWCCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	186
SatI	GCNGC	8 cut(s)	48, 111, 247, 360, 378, 438, 605, 687
Sau3AI	GATC	2 cut(s)	537, 766
Sau96I	GGNCC	3 cut(s)	31, 134, 284
SinI	GGWCC	2 cut(s)	134, 284
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	128, 598
SsiI	CCGC	4 cut(s)	54, 351, 377, 680
SspMI	CTAG	4 cut(s)	251, 669, 702, 787
StyI	CCWWGG	3 cut(s)	11, 333, 387
TaaI	ACNGT	3 cut(s)	185, 220, 760
TaiI	ACGT	2 cut(s)	144, 348
TaqI	TCGA	2 cut(s)	397, 744
TasI	AATT	2 cut(s)	128, 598
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	710
TscAI	CASTG	5 cut(s)	78, 188, 225, 237, 523
TseI	GCWGC	7 cut(s)	47, 110, 246, 359, 437, 604, 686
TspDTI	ATGAA	4 cut(s)	141, 213, 573, 723
TspRI	CASTG	5 cut(s)	78, 188, 225, 237, 523
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	134, 284
XceI	RCATGY	3 cut(s)	467, 488, 677
XspI	CTAG	4 cut(s)	251, 669, 702, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.