Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Forward (+)

16384736 .. 16386642

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0192500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCAGCTCTAAGCATAGGCATCGCCACCACCAGCTCCGCCTTACTTTCAAAGCCGACACTCCGCCGTTTCAGGCCCACAAGGATTTCCTGCGTCGCCTGGGATCCAGAAGGTATACTCGGGCCACCACAGACGGGCCACATAGCCCGAAAAGAGTTCCAGAGACGGCTCGAAAAGGACTCCGATGCTCGAGAAGCCTTCGAGCGCCAAGTCATTGAAGAAAAAGAGCGCCGTCGAGCTGTCAGAGAATCTCGAGTAGCTCCAGATACTGCGGAGGGGTTGATCGAGTACTTTCTTGATACCGAAGCTAGGGAGATTGAGTTCGAGATTTCGAGGTTGAGGCCAAGATTGAACAAGGAATTTTTCTCGCACCTAAAATTTGAGATAGGTCAGCTACGGTTTGCGGTTTCAAAAACTCAGGATATGGAAGATAGGTTGATTGAGCTGGAAGCATTGCAGAAAGCCCTGCAGGAAGGAACAGAAGCGTATGATAAAATGCAAATTGACCTCATTAAAGCCAAGGAAAGTCTGACCAAAATCTTGTCATCAAAGAATATCAAAGAAACTTTACTGGAGATGGTTGAAAGCAACGAACTTAATAGATCCTTGCTGACAATTCTTGATGAAAACATAGCAAGTGCACAGCAGGGTAACCAGAAGCAAGCAGCAGACTTCATGGAAAAGCTTCGTGGAGCTGTTCTCAAGTACATGACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

239

Amino Acids

27.41

Weight (kDa)

6.28

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	4 cut(s)	39, 64, 272, 404
AclWI	GGATC	3 cut(s)	98, 111, 597
AcsI	RAATTY	2 cut(s)	359, 377
AfaI	GTAC	2 cut(s)	290, 707
AfiI	CCNNNNNNNGG	2 cut(s)	134, 309
AgsI	TTSAA	5 cut(s)	51, 218, 352, 411, 584
AjnI	CCWGG	1 cut(s)	98
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	9 cut(s)	8, 36, 239, 260, 308, 394, 445, 685, 695
AluI	AGCT	9 cut(s)	8, 36, 239, 260, 308, 394, 445, 685, 695
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	1 cut(s)	157
Alw44I	GTGCAC	1 cut(s)	639
AlwI	GGATC	3 cut(s)	98, 111, 597
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	3 cut(s)	119, 189, 252
AoxI	GGCC	4 cut(s)	74, 122, 136, 341
ApaLI	GTGCAC	1 cut(s)	639
ApeKI	GCWGC	2 cut(s)	5, 665
ApoI	RAATTY	2 cut(s)	359, 377
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	2 cut(s)	207, 231
AspS9I	GGNCC	3 cut(s)	75, 122, 136
AvaI	CYCGRG	3 cut(s)	119, 189, 252
BaeGI	GKGCMC	1 cut(s)	643
BamHI	GGATCC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	17, 677
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	3 cut(s)	51, 182, 216
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	467
BfoI	RGCGCY	2 cut(s)	208, 232
BisI	GCNGC	2 cut(s)	6, 666
BlsI	GCNGC	2 cut(s)	7, 667
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	100
BmeT110I	CYCGRG	3 cut(s)	119, 189, 252
BmgT120I	GGNCC	3 cut(s)	75, 122, 136
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	2 cut(s)	30, 175
BplI	GAGNNNNNCTC	2 cut(s)	684, 716
BpmI	CTGGAG	2 cut(s)	246, 593
BpuEI	CTTGAG	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	99, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 309
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	99, 519
BseLI	CCNNNNNNNGG	2 cut(s)	134, 309
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	576
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	2 cut(s)	17, 677
BshFI	GGCC	4 cut(s)	76, 124, 138, 343
BsiHKAI	GWGCWC	1 cut(s)	643
BsiHKCI	CYCGRG	3 cut(s)	119, 189, 252
BslI	CCNNNNNNNGG	2 cut(s)	134, 309
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	4 cut(s)	76, 124, 138, 343
BsoBI	CYCGRG	3 cut(s)	119, 189, 252
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	3 cut(s)	103, 282, 602
BspACI	CCGC	4 cut(s)	39, 64, 272, 404
BspANI	GGCC	4 cut(s)	76, 124, 138, 343
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	471
BspPI	GGATC	3 cut(s)	98, 111, 597
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	2 cut(s)	99, 519
BssMI	GATC	3 cut(s)	103, 282, 602
BssNAI	GTATAC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	519
Bst1107I	GTATAC	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	399, 715
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	2 cut(s)	11, 417
BstEII	GGTNACC	1 cut(s)	650
BstH2I	RGCGCY	2 cut(s)	208, 232
BstHHI	GCGC	2 cut(s)	207, 231
BstKTI	GATC	3 cut(s)	106, 285, 605
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	3 cut(s)	103, 282, 602
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	467
BstSLI	GKGCMC	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	17, 677
BstX2I	RGATCY	2 cut(s)	103, 602
BstYI	RGATCY	2 cut(s)	103, 602
BstZ17I	GTATAC	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	76, 124, 138, 343
BtgZI	GCGATG	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	663
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	2 cut(s)	207, 231
Cfr13I	GGNCC	3 cut(s)	75, 122, 136
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	289, 706
CviAII	CATG	2 cut(s)	676, 709
CviQI	GTAC	2 cut(s)	289, 706
DdeI	CTNAG	2 cut(s)	11, 417
DpnI	GATC	3 cut(s)	105, 284, 604
DpnII	GATC	3 cut(s)	103, 282, 602
EciI	GGCGGA	2 cut(s)	28, 53
Eco130I	CCWWGG	1 cut(s)	519
Eco88I	CYCGRG	3 cut(s)	119, 189, 252
Eco91I	GGTNACC	1 cut(s)	650
EcoO65I	GGTNACC	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	2 cut(s)	679, 712
FaiI	YATR	8 cut(s)	17, 116, 143, 425, 489, 632, 677, 710
FatI	CATG	2 cut(s)	675, 708
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	6, 666
Fsp4HI	GCNGC	2 cut(s)	6, 666
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	206, 230
GluI	GCNGC	2 cut(s)	6, 666
GsuI	CTGGAG	2 cut(s)	246, 593
HaeII	RGCGCY	2 cut(s)	208, 232
HaeIII	GGCC	4 cut(s)	76, 124, 138, 343
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	207, 231
Hin1II	CATG	2 cut(s)	679, 712
Hin6I	GCGC	2 cut(s)	205, 229
HinP1I	GCGC	2 cut(s)	205, 229
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	2 cut(s)	179, 248
Hpy166II	GTNNAC	2 cut(s)	116, 641
Hpy188I	TCNGA	3 cut(s)	184, 245, 531
Hpy188III	TCNNGA	9 cut(s)	107, 160, 191, 252, 263, 296, 325, 419, 620
Hpy8I	GTNNAC	2 cut(s)	116, 641
Hpy99I	CGWCG	2 cut(s)	98, 237
HpyAV	CCTTC	3 cut(s)	104, 208, 467
HpyCH4III	ACNGT	2 cut(s)	399, 715
HpyCH4V	TGCA	4 cut(s)	457, 469, 499, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	11, 417
Hsp92II	CATG	2 cut(s)	679, 712
HspAI	GCGC	2 cut(s)	205, 229
Kzo9I	GATC	3 cut(s)	103, 282, 602
LmnI	GCTCC	3 cut(s)	41, 265, 692
Lsp1109I	GCAGC	2 cut(s)	17, 677
LweI	GCATC	2 cut(s)	30, 175
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	3 cut(s)	105, 284, 604
MboI	GATC	3 cut(s)	103, 282, 602
MboII	GAAGA	2 cut(s)	230, 440
MflI	RGATCY	2 cut(s)	103, 602
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	4 cut(s)	359, 377, 501, 615
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	268, 327, 333, 518
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	3 cut(s)	513, 597, 718
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	3 cut(s)	103, 282, 602
NlaIII	CATG	2 cut(s)	679, 712
NlaIV	GGNNCC	1 cut(s)	105
PaeR7I	CTCGAG	2 cut(s)	189, 252
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	7, 667
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	98
PspEI	GGTNACC	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	3 cut(s)	75, 122, 136
PstI	CTGCAG	1 cut(s)	471
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	103, 602
RsaI	GTAC	2 cut(s)	290, 707
RsaNI	GTAC	2 cut(s)	289, 706
SaqAI	TTAA	3 cut(s)	513, 597, 718
SatI	GCNGC	2 cut(s)	6, 666
Sau3AI	GATC	3 cut(s)	103, 282, 602
Sau96I	GGNCC	3 cut(s)	75, 122, 136
SbfI	CCTGCAGG	1 cut(s)	471
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	100
SdaI	CCTGCAGG	1 cut(s)	471
SduI	GDGCHC	1 cut(s)	643
SfaNI	GCATC	2 cut(s)	30, 175
SfcI	CTRYAG	1 cut(s)	467
Sfr274I	CTCGAG	2 cut(s)	189, 252
SlaI	CTCGAG	2 cut(s)	189, 252
SmlI	CTYRAG	3 cut(s)	189, 252, 701
SmoI	CTYRAG	3 cut(s)	189, 252, 701
Sse8387I	CCTGCAGG	1 cut(s)	471
Sse9I	AATT	4 cut(s)	359, 377, 501, 615
SsiI	CCGC	4 cut(s)	39, 64, 272, 404
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	2 cut(s)	399, 715
TaqI	TCGA	8 cut(s)	171, 190, 201, 235, 253, 285, 324, 332
TasI	AATT	4 cut(s)	359, 377, 501, 615
TatI	WGTACW	2 cut(s)	288, 705
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	3 cut(s)	513, 597, 718
Tru9I	TTAA	3 cut(s)	513, 597, 718
TseI	GCWGC	2 cut(s)	5, 665
TspDTI	ATGAA	2 cut(s)	639, 664
VneI	GTGCAC	1 cut(s)	639
XapI	RAATTY	2 cut(s)	359, 377
XhoI	CTCGAG	2 cut(s)	189, 252
XmiI	GTMKAC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.