Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

18353554 .. 18355779

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGCAATGGAAGGCGAGAAAAGTAGGTAAAGAGATCGGATCTGAATTGGCGTGGCAAATTGGAGCGATTGATTCAAGTTTTGTGCCAGTTTTTTCGATGACAGGTCTTCTGGCATTCATGCCTGCTAAGGTTTTGATGACGGGAAAAGACGATATGGTGGTTGCCGGAACTAGGACTATGGCCGGAGAGCGGTCACTCAAGGAACACATTATAATATATGAAGCATTGAGTCTTATAAACAGCAGATCCAAGAGAAGAAGACTATCATTTGGAAGTTTGAGCAGCACAGCCATAAAGAACACAAGCATTTCATCATCAGAAATGTCTAAGCCAAGGTTGGAGGGTAAGGTGGCTCTCATCACTGGTGCAGCTGGTGGCATTGGTGAGGAAGCAGCAAGACTTTTTGCAGCGAATGGAGCTTTTGTTGTCGTAGCTGATATTCAAGATGAATTGGGTCTTCAAGTTGTAGCCTCAATAGCTTCAGAAAGAGTCTCTTACTTCCACTGTGATGTGAGAGACGAAAACCAAGTTGAACAAACAGTAAGTTACACATTGGAAAAATACGGCAGCCTAGACGTTTTGTTCAGCAATGCAGGCATTATGGGTCCAATGACCGGCATTTTAGACCTCGACATCCAAGGTTTCGACAATGCAATGATCACAAATGTCCGCGGAGTAGCAACAACAATCAAGCACGCAGCTCGTGCCATGGTTGCTAGAAAACTCCGTGGATCCATTATATGCACTTCAAGCGTTGCAGCATCACTTGGAGGTACAGCTCCACATGCTTATACGACATCGAAAACCGCCTTAATCGGGTTGGTGAGATCGGCTTGTAGTGAGCTTGGTTCATATGGGATTCGAGTGAACTGCATTTCCCCATTTGGTGTTGCAACCCCTCTTTCGTGTAACGCTTATAACTTGGCGCCGAATGAGGTCGAAGCCAATAGCTCTGCCATTGCCAACTTAAAGGGGACTGTGTTGAAGGCTAGGCATGTCGCAGAGGCAGCTCTGTTTCTTGCATCCGATGAATCGGGTTACGTTAGCGGGCACAACTTGGTAATTGATGGAGGCTTCTCGGTGGTTGATCACAGTTTTTCACCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

371

Amino Acids

39.08

Weight (kDa)

7.05

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	117 - 303	1.1e-46	short chain dehydrogenase
KR	PF08659	119 - 279	4.8e-09	KR domain
adh_short_C2	PF13561	123 - 361	9.6e-61	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	215, 239, 921
AccB1I	GGYRCC	1 cut(s)	928
AccBSI	CCGCTC	1 cut(s)	193
AccII	CGCG	1 cut(s)	675
AciI	CCGC	5 cut(s)	193, 673, 675, 810, 1050
AclWI	GGATC	4 cut(s)	49, 243, 729, 742
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	929
AfaI	GTAC	1 cut(s)	778
AfiI	CCNNNNNNNGG	4 cut(s)	174, 192, 617, 819
AgsI	TTSAA	6 cut(s)	78, 446, 464, 536, 753, 988
AloI	GAACNNNNNNTCC	2 cut(s)	863, 895
AluBI	AGCT	9 cut(s)	374, 422, 437, 482, 704, 782, 847, 954, 1013
AluI	AGCT	9 cut(s)	374, 422, 437, 482, 704, 782, 847, 954, 1013
Alw26I	GTCTC	2 cut(s)	499, 513
AlwI	GGATC	4 cut(s)	49, 243, 729, 742
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	8 cut(s)	285, 371, 395, 410, 570, 701, 761, 1010
AspLEI	GCGC	1 cut(s)	931
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	398, 838, 1095
AvaII	GGWCC	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	1056
BamHI	GGATCC	1 cut(s)	734
BanI	GGYRCC	1 cut(s)	928
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	3 cut(s)	101, 268, 452
BbvI	GCAGC	8 cut(s)	297, 383, 407, 422, 582, 713, 773, 1022
BccI	CCATC	1 cut(s)	1064
BceAI	ACGGC	1 cut(s)	583
BcgI	CGANNNNNNTGC	4 cut(s)	686, 720, 855, 889
BclI	TGATCA	2 cut(s)	660, 1090
BcoDI	GTCTC	2 cut(s)	499, 513
BfaI	CTAG	4 cut(s)	174, 575, 720, 993
BfoI	RGCGCY	1 cut(s)	932
BisI	GCNGC	8 cut(s)	286, 372, 396, 411, 571, 702, 762, 1011
BlsI	GCNGC	8 cut(s)	287, 373, 397, 412, 572, 703, 763, 1012
Bme18I	GGWCC	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	3 cut(s)	609, 736, 930
BmsI	GCATC	2 cut(s)	773, 1034
BpiI	GAAGAC	3 cut(s)	101, 268, 452
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	929
BsaJI	CCNNGG	5 cut(s)	335, 640, 673, 711, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 192, 617, 819
Bse118I	RCCGGY	1 cut(s)	617
Bse1I	ACTGG	2 cut(s)	89, 370
Bse3DI	GCAATG	4 cut(s)	14, 598, 663, 960
BseDI	CCNNGG	5 cut(s)	335, 640, 673, 711, 730
BseGI	GGATG	2 cut(s)	636, 1025
BseLI	CCNNNNNNNGG	4 cut(s)	174, 192, 617, 819
BseMI	GCAATG	4 cut(s)	14, 598, 663, 960
BseNI	ACTGG	2 cut(s)	89, 370
BseSI	GKGCMC	1 cut(s)	1056
BseXI	GCAGC	8 cut(s)	297, 383, 407, 422, 582, 713, 773, 1022
BsgI	GTGCAG	1 cut(s)	390
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	928
BsiSI	CCGG	3 cut(s)	168, 186, 618
BslFI	GGGAC	1 cut(s)	991
BslI	CCNNNNNNNGG	4 cut(s)	174, 192, 617, 819
BsmAI	GTCTC	2 cut(s)	499, 513
BsmBI	CGTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	991
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	1056
Bsp143I	GATC	7 cut(s)	36, 41, 248, 660, 734, 830, 1090
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	5 cut(s)	193, 673, 675, 810, 1050
BspANI	GGCC	1 cut(s)	185
BspFNI	CGCG	1 cut(s)	675
BspLI	GGNNCC	3 cut(s)	609, 736, 930
BspPI	GGATC	4 cut(s)	49, 243, 729, 742
BspT107I	GGYRCC	1 cut(s)	928
BsrBI	CCGCTC	1 cut(s)	193
BsrDI	GCAATG	4 cut(s)	14, 598, 663, 960
BsrFI	RCCGGY	1 cut(s)	617
BsrI	ACTGG	2 cut(s)	89, 370
BssAI	RCCGGY	1 cut(s)	617
BssECI	CCNNGG	5 cut(s)	335, 640, 673, 711, 730
BssMI	GATC	7 cut(s)	36, 41, 248, 660, 734, 830, 1090
BssNI	GRCGYC	1 cut(s)	929
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	3 cut(s)	335, 640, 711
Bst2BI	CACGAG	1 cut(s)	705
Bst4CI	ACNGT	4 cut(s)	509, 544, 982, 1097
BstACI	GRCGYC	1 cut(s)	929
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstC8I	GCNNGC	4 cut(s)	126, 598, 699, 1052
BstDEI	CTNAG	2 cut(s)	129, 330
BstDSI	CCRYGG	3 cut(s)	673, 711, 730
BstF5I	GGATG	2 cut(s)	636, 1025
BstFNI	CGCG	1 cut(s)	675
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	1 cut(s)	931
BstKTI	GATC	7 cut(s)	39, 44, 251, 663, 737, 833, 1093
BstMAI	GTCTC	2 cut(s)	499, 513
BstMBI	GATC	7 cut(s)	36, 41, 248, 660, 734, 830, 1090
BstMWI	GCNNNNNNNGC	8 cut(s)	419, 479, 597, 707, 716, 753, 788, 1010
BstNSI	RCATGY	2 cut(s)	791, 1001
BstSLI	GKGCMC	1 cut(s)	1056
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	8 cut(s)	297, 383, 407, 422, 582, 713, 773, 1022
BstV2I	GAAGAC	3 cut(s)	101, 268, 452
BstX2I	RGATCY	3 cut(s)	41, 248, 734
BstYI	RGATCY	3 cut(s)	41, 248, 734
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	3 cut(s)	673, 711, 730
BtsCI	GGATG	2 cut(s)	636, 1025
BtsIMutI	CAGTG	2 cut(s)	363, 505
Cac8I	GCNNGC	4 cut(s)	126, 598, 699, 1052
CfoI	GCGC	1 cut(s)	931
Cfr10I	RCCGGY	1 cut(s)	617
Cfr13I	GGNCC	1 cut(s)	608
Cfr42I	CCGCGG	1 cut(s)	676
Csp6I	GTAC	1 cut(s)	777
CviAII	CATG	4 cut(s)	121, 712, 788, 998
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	2 cut(s)	129, 330
DinI	GGCGCC	1 cut(s)	930
DpnI	GATC	7 cut(s)	38, 43, 250, 662, 736, 832, 1092
DpnII	GATC	7 cut(s)	36, 41, 248, 660, 734, 830, 1090
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	3 cut(s)	335, 640, 711
Eco47I	GGWCC	1 cut(s)	608
Eco57I	CTGAAG	1 cut(s)	468
EcoT14I	CCWWGG	3 cut(s)	335, 640, 711
EgeI	GGCGCC	1 cut(s)	930
EheI	GGCGCC	1 cut(s)	930
ErhI	CCWWGG	3 cut(s)	335, 640, 711
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	4 cut(s)	124, 715, 791, 1001
FalI	AAGNNNNNCTT	2 cut(s)	481, 513
FaqI	GGGAC	1 cut(s)	991
FatI	CATG	4 cut(s)	120, 711, 787, 997
FauI	CCCGC	1 cut(s)	1043
FauNDI	CATATG	1 cut(s)	856
FbaI	TGATCA	2 cut(s)	660, 1090
Fnu4HI	GCNGC	8 cut(s)	286, 372, 396, 411, 571, 702, 762, 1011
FokI	GGATG	2 cut(s)	623, 1012
Fsp4HI	GCNGC	8 cut(s)	286, 372, 396, 411, 571, 702, 762, 1011
FspBI	CTAG	4 cut(s)	174, 575, 720, 993
GlaI	GCGC	1 cut(s)	930
GluI	GCNGC	8 cut(s)	286, 372, 396, 411, 571, 702, 762, 1011
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	3 cut(s)	168, 186, 618
HhaI	GCGC	1 cut(s)	931
Hin1I	GRCGYC	1 cut(s)	929
Hin1II	CATG	4 cut(s)	124, 715, 791, 1001
Hin6I	GCGC	1 cut(s)	929
HinP1I	GCGC	1 cut(s)	929
HinfI	GANTC	5 cut(s)	74, 232, 492, 862, 1034
HpaII	CCGG	3 cut(s)	168, 186, 618
HphI	GGTGA	3 cut(s)	398, 838, 1095
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	5 cut(s)	41, 46, 322, 487, 1030
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	1 cut(s)	871
HpyAV	CCTTC	2 cut(s)	7, 982
HpyCH4III	ACNGT	4 cut(s)	509, 544, 982, 1097
HpyCH4IV	ACGT	2 cut(s)	579, 1044
HpyCH4V	TGCA	9 cut(s)	371, 410, 596, 656, 747, 761, 876, 896, 1025
HpyF10VI	GCNNNNNNNGC	8 cut(s)	419, 479, 597, 707, 716, 753, 788, 1010
HpyF3I	CTNAG	2 cut(s)	129, 330
HpySE526I	ACGT	2 cut(s)	579, 1044
Hsp92I	GRCGYC	1 cut(s)	929
Hsp92II	CATG	4 cut(s)	124, 715, 791, 1001
HspAI	GCGC	1 cut(s)	929
KasI	GGCGCC	1 cut(s)	928
Ksp22I	TGATCA	2 cut(s)	660, 1090
KspI	CCGCGG	1 cut(s)	676
Kzo9I	GATC	7 cut(s)	36, 41, 248, 660, 734, 830, 1090
LmnI	GCTCC	4 cut(s)	4, 65, 419, 787
Lsp1109I	GCAGC	8 cut(s)	297, 383, 407, 422, 582, 713, 773, 1022
LweI	GCATC	2 cut(s)	773, 1034
MaeI	CTAG	4 cut(s)	174, 575, 720, 993
MaeII	ACGT	2 cut(s)	579, 1044
MaeIII	GTNAC	4 cut(s)	195, 548, 911, 1040
MalI	GATC	7 cut(s)	38, 43, 250, 662, 736, 832, 1092
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	7 cut(s)	36, 41, 248, 660, 734, 830, 1090
MboII	GAAGA	4 cut(s)	101, 270, 273, 452
MflI	RGATCY	3 cut(s)	41, 248, 734
MhlI	GDGCHC	1 cut(s)	1056
MluCI	AATT	5 cut(s)	47, 60, 452, 1065, 1108
Mly113I	GGCGCC	1 cut(s)	929
MlyI	GAGTC	2 cut(s)	241, 501
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	9 cut(s)	337, 382, 484, 641, 767, 912, 931, 1000, 1067
MseI	TTAA	3 cut(s)	815, 971, 1111
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	2 cut(s)	374, 675
MspI	CCGG	3 cut(s)	168, 186, 618
Mva1269I	GAATGC	1 cut(s)	116
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	8 cut(s)	419, 479, 597, 707, 716, 753, 788, 1010
NarI	GGCGCC	1 cut(s)	929
NcoI	CCATGG	1 cut(s)	711
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	7 cut(s)	36, 41, 248, 660, 734, 830, 1090
NlaIII	CATG	4 cut(s)	124, 715, 791, 1001
NlaIV	GGNNCC	3 cut(s)	609, 736, 930
NmuCI	GTSAC	1 cut(s)	195
NspI	RCATGY	2 cut(s)	791, 1001
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	74, 862, 1034
PkrI	GCNGC	8 cut(s)	287, 373, 397, 412, 572, 703, 763, 1012
PleI	GAGTC	2 cut(s)	240, 500
PluTI	GGCGCC	1 cut(s)	932
PpsI	GAGTC	2 cut(s)	240, 500
PsiI	TTATAA	3 cut(s)	215, 239, 921
PspN4I	GGNNCC	3 cut(s)	609, 736, 930
PspPI	GGNCC	1 cut(s)	608
PsuI	RGATCY	3 cut(s)	41, 248, 734
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	510
SacII	CCGCGG	1 cut(s)	676
SaqAI	TTAA	3 cut(s)	815, 971, 1111
SatI	GCNGC	8 cut(s)	286, 372, 396, 411, 571, 702, 762, 1011
Sau3AI	GATC	7 cut(s)	36, 41, 248, 660, 734, 830, 1090
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	2 cut(s)	241, 501
SduI	GDGCHC	1 cut(s)	1056
SfaNI	GCATC	2 cut(s)	773, 1034
SfoI	GGCGCC	1 cut(s)	930
Sfr303I	CCGCGG	1 cut(s)	676
SgrBI	CCGCGG	1 cut(s)	676
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	5 cut(s)	47, 60, 452, 1065, 1108
SsiI	CCGC	5 cut(s)	193, 673, 675, 810, 1050
SspDI	GGCGCC	1 cut(s)	928
SspMI	CTAG	4 cut(s)	174, 575, 720, 993
StyI	CCWWGG	3 cut(s)	335, 640, 711
TaaI	ACNGT	4 cut(s)	509, 544, 982, 1097
TaiI	ACGT	2 cut(s)	582, 1047
TaqI	TCGA	6 cut(s)	98, 633, 648, 803, 865, 942
TasI	AATT	5 cut(s)	47, 60, 452, 1065, 1108
TfiI	GAWTC	3 cut(s)	74, 862, 1034
Tru1I	TTAA	3 cut(s)	815, 971, 1111
Tru9I	TTAA	3 cut(s)	815, 971, 1111
TscAI	CASTG	2 cut(s)	370, 512
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	8 cut(s)	285, 371, 395, 410, 570, 701, 761, 1010
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	6 cut(s)	109, 237, 303, 465, 843, 1047
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	2 cut(s)	370, 512
VpaK11BI	GGWCC	1 cut(s)	608
XceI	RCATGY	2 cut(s)	791, 1001
XspI	CTAG	4 cut(s)	174, 575, 720, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.