Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Forward (+)

34056888 .. 34058115

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1280600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCTAAGCCAAGGTTGGAGGGCAAGGTGGCCCTGATAACTGGTGGGGCAGCTGGGATTGGTGAGGAGGCGGTCAGATTATTTGCAGCCAACGGGGCCTTTGTTGTTGTTGCTGATATCCAAGACGAATTAGGTCATCAACTTGTTGCCTCAATCGGCTCAGACAGAGTTAGCTACTGCCGCTGCGACGTCAGAGATGAAAATCAAGTCGAAAACACGGTGAACTTCACGTTGGAAAAATACGGCGGCCTTGACATTTTGTTCAGCAATGCAGGTGTCATGGGTCCGATGACTGGCATTTTAGACCTCGACATTCAAGGCTTTGACAACACAATGGCCACCAACGTTCGCGGTGTTGCTGCAACCATCAAGCACGCCGCACGCGCCATGGTGGCACGTGCCGTGCGTGGTTCAATCATATGTACCACGAGTGTTGCAGCCTCTCTCGGAGGCATGGCTCCGCACGCTTACACCACTTCGAAACATGCTCTGTTGGGTTTGGTCAGAGGAGCTTGTAGTGAGCTCGGAGCTCACGGGATTCGAGTTAACAGCATTTCGCCATTCGGAGTCGCAACCTCGCTTGCGTGCAAAGCGTACAATTTGGAGCCAGATGAGGTTGAGGCCAATAGCTCCGCCATAGGAAATTTGAAGGGCGTTGTGTTGAAGGCTAGGCATGTAGCGGACGCGGCTCTGTTTCTTGCGGCCGATGAATCGGCGTATGTCAGTGGACACAACTTGGTTGTCGACGGCGGATTCACGGTGGTTGATCACAGTTTTTCGGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

263

Amino Acids

27.1

Weight (kDa)

5.72

Isoelectric Point (pI)

17.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 195	1.5e-46	short chain dehydrogenase
KR	PF08659	11 - 170	4.4e-08	KR domain
adh_short_C2	PF13561	16 - 253	1.7e-58	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	3 cut(s)	351, 384, 686
AclI	AACGTT	1 cut(s)	345
AcoI	YGGCCR	3 cut(s)	336, 702, 780
AcsI	RAATTY	1 cut(s)	643
AcvI	CACGTG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	424, 596
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	317, 414, 649, 664
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	6 cut(s)	53, 174, 512, 523, 530, 630
AluI	AGCT	6 cut(s)	53, 174, 512, 523, 530, 630
Alw21I	GWGCWC	2 cut(s)	525, 532
AoxI	GGCC	7 cut(s)	30, 96, 247, 336, 621, 702, 780
ApeKI	GCWGC	5 cut(s)	50, 86, 183, 359, 437
ApoI	RAATTY	1 cut(s)	643
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	3 cut(s)	31, 96, 284
AsuHPI	GGTGA	2 cut(s)	74, 232
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	525, 532
BauI	CACGAG	1 cut(s)	427
BbrPI	CACGTG	1 cut(s)	398
Bbv12I	GWGCWC	2 cut(s)	525, 532
BbvI	GCAGC	5 cut(s)	62, 98, 170, 346, 449
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	3 cut(s)	259, 386, 763
BclI	TGATCA	1 cut(s)	766
BfaI	CTAG	1 cut(s)	669
BfuAI	ACCTGC	1 cut(s)	263
BglI	GCCNNNNNGGC	2 cut(s)	95, 392
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	31, 96, 284
BmiI	GGNNCC	4 cut(s)	97, 285, 459, 606
Bpu14I	TTCGAA	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	11, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	46, 298
Bse3DI	GCAATG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	11, 387
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	2 cut(s)	46, 298
BseRI	GAGGAG	2 cut(s)	80, 522
BseX3I	CGGCCG	1 cut(s)	702
BseXI	GCAGC	5 cut(s)	62, 98, 170, 346, 449
BseYI	CCCAGC	1 cut(s)	53
Bsh1236I	CGCG	3 cut(s)	351, 384, 686
Bsh1285I	CGRYCG	1 cut(s)	705
BshFI	GGCC	7 cut(s)	32, 98, 249, 338, 623, 704, 782
BsiEI	CGRYCG	1 cut(s)	705
BsiHKAI	GWGCWC	2 cut(s)	525, 532
BslI	CCNNNNNNNGG	1 cut(s)	293
BsnI	GGCC	7 cut(s)	32, 98, 249, 338, 623, 704, 782
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	525, 532
Bsp143I	GATC	1 cut(s)	766
Bsp19I	CCATGG	1 cut(s)	387
BspANI	GGCC	7 cut(s)	32, 98, 249, 338, 623, 704, 782
BspCNI	CTCAG	1 cut(s)	173
BspFNI	CGCG	3 cut(s)	351, 384, 686
BspLI	GGNNCC	4 cut(s)	97, 285, 459, 606
BspMI	ACCTGC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	46, 298
BssECI	CCNNGG	2 cut(s)	11, 387
BssMI	GATC	1 cut(s)	766
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	427
BssT1I	CCWWGG	2 cut(s)	11, 387
Bst2BI	CACGAG	1 cut(s)	427
Bst4CI	ACNGT	3 cut(s)	220, 760, 773
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	5 cut(s)	375, 382, 465, 582, 586
BstDEI	CTNAG	2 cut(s)	6, 160
BstDSI	CCRYGG	1 cut(s)	387
BstFNI	CGCG	3 cut(s)	351, 384, 686
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	1 cut(s)	769
BstMBI	GATC	1 cut(s)	766
BstMCI	CGRYCG	1 cut(s)	705
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 180, 383, 392, 464, 590, 686
BstNSI	RCATGY	2 cut(s)	488, 677
BstUI	CGCG	3 cut(s)	351, 384, 686
BstV1I	GCAGC	5 cut(s)	62, 98, 170, 346, 449
BstZI	CGGCCG	1 cut(s)	702
BsuRI	GGCC	7 cut(s)	32, 98, 249, 338, 623, 704, 782
BtgI	CCRYGG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	730
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	5 cut(s)	375, 382, 465, 582, 586
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	3 cut(s)	31, 96, 284
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	423, 595
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	5 cut(s)	280, 388, 454, 485, 674
CviQI	GTAC	2 cut(s)	423, 595
DdeI	CTNAG	2 cut(s)	6, 160
DpnI	GATC	1 cut(s)	768
DpnII	GATC	1 cut(s)	766
EaeI	YGGCCR	3 cut(s)	336, 702, 780
EagI	CGGCCG	1 cut(s)	702
EciI	GGCGGA	2 cut(s)	622, 765
Ecl136II	GAGCTC	2 cut(s)	523, 530
EclXI	CGGCCG	1 cut(s)	702
Eco130I	CCWWGG	2 cut(s)	11, 387
Eco24I	GRGCYC	2 cut(s)	525, 532
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	284
Eco52I	CGGCCG	1 cut(s)	702
Eco53kI	GAGCTC	2 cut(s)	523, 530
Eco72I	CACGTG	1 cut(s)	398
EcoICRI	GAGCTC	2 cut(s)	523, 530
EcoO109I	RGGNCCY	1 cut(s)	96
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	11, 387
EcoT38I	GRGCYC	2 cut(s)	525, 532
ErhI	CCWWGG	2 cut(s)	11, 387
FaeI	CATG	5 cut(s)	283, 391, 457, 488, 677
FaiI	YATR	9 cut(s)	281, 389, 419, 421, 455, 486, 638, 675, 720
FatI	CATG	5 cut(s)	279, 387, 453, 484, 673
FauNDI	CATATG	1 cut(s)	419
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	744
FriOI	GRGCYC	2 cut(s)	525, 532
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	385
GsaI	CCCAGC	1 cut(s)	57
HaeIII	GGCC	7 cut(s)	32, 98, 249, 338, 623, 704, 782
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	1 cut(s)	386
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	5 cut(s)	283, 391, 457, 488, 677
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	2 cut(s)	547, 745
HindII	GTYRAC	2 cut(s)	547, 745
HinfI	GANTC	4 cut(s)	538, 567, 710, 753
HpaI	GTTAAC	1 cut(s)	547
HphI	GGTGA	2 cut(s)	74, 232
Hpy166II	GTNNAC	4 cut(s)	223, 547, 728, 745
Hpy188I	TCNGA	8 cut(s)	77, 163, 194, 288, 449, 506, 527, 566
Hpy8I	GTNNAC	4 cut(s)	223, 547, 728, 745
Hpy99I	CGWCG	2 cut(s)	191, 749
HpyAV	CCTTC	2 cut(s)	643, 658
HpyCH4III	ACNGT	3 cut(s)	220, 760, 773
HpyCH4IV	ACGT	4 cut(s)	189, 230, 345, 397
HpyCH4V	TGCA	5 cut(s)	86, 272, 362, 437, 588
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 180, 383, 392, 464, 590, 686
HpyF3I	CTNAG	2 cut(s)	6, 160
HpySE526I	ACGT	4 cut(s)	189, 230, 345, 397
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	5 cut(s)	283, 391, 457, 488, 677
HspAI	GCGC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	766
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	1 cut(s)	766
LmnI	GCTCC	5 cut(s)	463, 509, 527, 604, 635
LpnPI	CCDG	6 cut(s)	27, 39, 47, 258, 279, 621
Lsp1109I	GCAGC	5 cut(s)	62, 98, 170, 346, 449
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	4 cut(s)	189, 230, 345, 397
MalI	GATC	1 cut(s)	768
MboI	GATC	1 cut(s)	766
MhlI	GDGCHC	2 cut(s)	525, 532
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	128, 598, 643
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	213
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	2 cut(s)	53, 183
MvnI	CGCG	3 cut(s)	351, 384, 686
MwoI	GCNNNNNNNGC	7 cut(s)	95, 180, 383, 392, 464, 590, 686
NcoI	CCATGG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	419
NdeII	GATC	1 cut(s)	766
NlaIII	CATG	5 cut(s)	283, 391, 457, 488, 677
NlaIV	GGNNCC	4 cut(s)	97, 285, 459, 606
NspI	RCATGY	2 cut(s)	488, 677
NspV	TTCGAA	1 cut(s)	479
PaqCI	CACCTGC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PfeI	GAWTC	3 cut(s)	538, 710, 753
PleI	GAGTC	1 cut(s)	575
PmaCI	CACGTG	1 cut(s)	398
PmlI	CACGTG	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	575
Ppu21I	YACGTR	1 cut(s)	398
Psp124BI	GAGCTC	2 cut(s)	525, 532
Psp1406I	AACGTT	1 cut(s)	345
PspCI	CACGTG	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	4 cut(s)	97, 285, 459, 606
PspPI	GGNCC	3 cut(s)	31, 96, 284
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	424, 596
RsaNI	GTAC	2 cut(s)	423, 595
SacI	GAGCTC	2 cut(s)	525, 532
SalI	GTCGAC	1 cut(s)	743
SaqAI	TTAA	1 cut(s)	546
Sau3AI	GATC	1 cut(s)	766
Sau96I	GGNCC	3 cut(s)	31, 96, 284
SchI	GAGTC	1 cut(s)	576
SduI	GDGCHC	2 cut(s)	525, 532
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	3 cut(s)	128, 598, 643
SspMI	CTAG	1 cut(s)	669
SstI	GAGCTC	2 cut(s)	525, 532
StyI	CCWWGG	2 cut(s)	11, 387
TaaI	ACNGT	3 cut(s)	220, 760, 773
TaiI	ACGT	4 cut(s)	192, 233, 348, 400
TaqI	TCGA	5 cut(s)	210, 309, 479, 541, 744
TasI	AATT	3 cut(s)	128, 598, 643
TauI	GCSGC	5 cut(s)	183, 249, 380, 689, 704
TfiI	GAWTC	3 cut(s)	538, 710, 753
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	1 cut(s)	730
TseI	GCWGC	5 cut(s)	50, 86, 183, 359, 437
TspDTI	ATGAA	2 cut(s)	213, 723
TspRI	CASTG	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	2 cut(s)	488, 677
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	1 cut(s)	669
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.