Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

11215952 .. 11216866

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCGGGACAAAGATTGGATGGCAAGATCGTAATTATAACAGGCGGGGCTAGTGGGATCGGAGCTGAAGCAGCGAGGTTGTTCACGGACCATGGAGCTAAAGTTGTCATCGTTGACTTACAAGAGGAGCTTGGTCAAAACGTCGCCGTTTCGATCGGGCTAGACAAAGCAAGTTTTTACCGTTGCGATATAACGGATGAGACGGAAGTTGAGAACGCCGTTAAGTTCACCGTTGAAAAACACGGAAAGCTTGACGTTCTGTTTAGTAACGCCGGGGTCATGGAACCGCATGGAAGCATTCTTGATTTGGATCTTGAGGCGTTTGATCGAACGATGGCCGTCAACGTTCGCGGTGCGGCTGCGTTTATAAAACATGCAGCGCGTTCGATGGTGGCTAGTGGAACTCGTGGCTCCATTGTTTGTACAACGAGTGTGACGGCTGAGATTGGTGGTCCGGGACCTCACAGTTACACAGCGTCGAAACACGCGCTTCTCGGGTTGGTTCGATCAGCGTGTGGCGGGTTGGGGAAGTACGGGATTAGAGTCAACGGTGTTGCACCGTATGGAGTAGCAACGGGGTTAACTAGCTACAACGAGGAAACTGTGAAGATGGTTGAGGATTACTGTTCAGCCACGGCGATTCTCAAAGGTGTTGTACTTAAAGCTCGACATGTGGCAGATGCAGCTTTGTTTTTGGCTTCTGATGATTCGGTTTATATTAGTGGTCAAAACTTGGGGGTTGACGGCGGTTATAGCGTCGTTAAGCTGACATCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0046872 GO:0046914 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

259

Amino Acids

26.92

Weight (kDa)

5.8

Isoelectric Point (pI)

20.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 200	2.8e-49	short chain dehydrogenase
KR	PF08659	11 - 169	5.2e-11	KR domain
adh_short_C2	PF13561	17 - 252	3.1e-63	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	38, 368
AccII	CGCG	3 cut(s)	351, 382, 488
AciI	CCGC	6 cut(s)	45, 287, 351, 356, 519, 747
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	2 cut(s)	65, 318
AcoI	YGGCCR	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	3 cut(s)	424, 533, 657
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	8 cut(s)	65, 98, 130, 250, 588, 665, 686, 766
AluI	AGCT	8 cut(s)	65, 98, 130, 250, 588, 665, 686, 766
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	65, 318
Ama87I	CYCGRG	1 cut(s)	494
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	4 cut(s)	71, 359, 377, 683
AspLEI	GCGC	2 cut(s)	382, 490
AspS9I	GGNCC	3 cut(s)	88, 452, 458
AsuC2I	CCSGG	2 cut(s)	274, 456
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	3 cut(s)	88, 452, 458
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	4 cut(s)	83, 346, 389, 695
BccI	CCATC	4 cut(s)	14, 328, 382, 604
BceAI	ACGGC	6 cut(s)	131, 203, 323, 453, 651, 760
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BcnI	CCSGG	2 cut(s)	274, 456
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	4 cut(s)	51, 161, 396, 585
BisI	GCNGC	5 cut(s)	72, 357, 360, 378, 684
BlsI	GCNGC	5 cut(s)	73, 358, 361, 379, 685
Bme1390I	CCNGG	2 cut(s)	274, 456
Bme18I	GGWCC	3 cut(s)	88, 452, 458
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	88, 452, 458
BmiI	GGNNCC	3 cut(s)	285, 412, 459
BmrFI	CCNGG	2 cut(s)	274, 456
BmsI	GCATC	1 cut(s)	670
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	274, 456
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	91, 273, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse8I	GATNNNNATC	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	91, 273, 633
BseGI	GGATG	2 cut(s)	25, 202
BseJI	GATNNNNATC	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	432
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	83, 346, 389, 695
Bsh1236I	CGCG	3 cut(s)	351, 382, 488
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	273, 455
BslFI	GGGAC	2 cut(s)	21, 471
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	2 cut(s)	21, 471
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	494
Bsp1407I	TGTACA	1 cut(s)	422
Bsp143I	GATC	6 cut(s)	27, 57, 153, 310, 325, 506
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	6 cut(s)	45, 287, 351, 356, 519, 747
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	3 cut(s)	351, 382, 488
BspLI	GGNNCC	3 cut(s)	285, 412, 459
BspPI	GGATC	2 cut(s)	65, 318
BsrGI	TGTACA	1 cut(s)	422
BssECI	CCNNGG	3 cut(s)	91, 273, 633
BssMI	GATC	6 cut(s)	27, 57, 153, 310, 325, 506
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	7 cut(s)	182, 232, 467, 551, 561, 604, 626
BstAUI	TGTACA	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	2 cut(s)	91, 633
BstF5I	GGATG	2 cut(s)	25, 202
BstFNI	CGCG	3 cut(s)	351, 382, 488
BstHHI	GCGC	2 cut(s)	382, 490
BstKTI	GATC	6 cut(s)	30, 60, 156, 313, 328, 509
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	6 cut(s)	27, 57, 153, 310, 325, 506
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 683, 753
BstNSI	RCATGY	2 cut(s)	377, 674
BstSCI	CCNGG	2 cut(s)	272, 454
BstUI	CGCG	3 cut(s)	351, 382, 488
BstV1I	GCAGC	4 cut(s)	83, 346, 389, 695
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	338
BtgI	CCRYGG	2 cut(s)	91, 633
BtsCI	GGATG	2 cut(s)	25, 202
CfoI	GCGC	2 cut(s)	382, 490
Cfr13I	GGNCC	3 cut(s)	88, 452, 458
CseI	GACGC	2 cut(s)	465, 745
Csp6I	GTAC	3 cut(s)	423, 532, 656
CviAII	CATG	5 cut(s)	92, 280, 290, 374, 671
CviQI	GTAC	3 cut(s)	423, 532, 656
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	6 cut(s)	29, 59, 155, 312, 327, 508
DpnII	GATC	6 cut(s)	27, 57, 153, 310, 325, 506
EaeI	YGGCCR	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	88, 452, 458
Eco57I	CTGAAG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	5 cut(s)	95, 283, 293, 377, 674
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	2 cut(s)	21, 471
FatI	CATG	5 cut(s)	91, 279, 289, 373, 670
FauI	CCCGC	2 cut(s)	38, 512
Fnu4HI	GCNGC	5 cut(s)	72, 357, 360, 378, 684
FokI	GGATG	2 cut(s)	32, 209
Fsp4HI	GCNGC	5 cut(s)	72, 357, 360, 378, 684
FspBI	CTAG	4 cut(s)	51, 161, 396, 585
GlaI	GCGC	2 cut(s)	381, 489
GluI	GCNGC	5 cut(s)	72, 357, 360, 378, 684
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	2 cut(s)	273, 455
HgaI	GACGC	2 cut(s)	465, 745
HhaI	GCGC	2 cut(s)	382, 490
Hin1II	CATG	5 cut(s)	95, 283, 293, 377, 674
Hin6I	GCGC	2 cut(s)	380, 488
HinP1I	GCGC	2 cut(s)	380, 488
HincII	GTYRAC	5 cut(s)	115, 343, 547, 582, 742
HindII	GTYRAC	5 cut(s)	115, 343, 547, 582, 742
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	3 cut(s)	543, 640, 707
HpaI	GTTAAC	1 cut(s)	582
HpaII	CCGG	2 cut(s)	273, 455
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	7 cut(s)	84, 115, 228, 343, 547, 582, 742
Hpy188I	TCNGA	2 cut(s)	62, 703
Hpy188III	TCNNGA	3 cut(s)	6, 302, 314
Hpy8I	GTNNAC	7 cut(s)	84, 115, 228, 343, 547, 582, 742
Hpy99I	CGWCG	3 cut(s)	146, 481, 761
HpyCH4III	ACNGT	7 cut(s)	182, 232, 467, 551, 561, 604, 626
HpyCH4IV	ACGT	3 cut(s)	141, 255, 345
HpyCH4V	TGCA	3 cut(s)	377, 557, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 683, 753
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	3 cut(s)	141, 255, 345
Hsp92II	CATG	5 cut(s)	95, 283, 293, 377, 674
HspAI	GCGC	2 cut(s)	380, 488
KspAI	GTTAAC	1 cut(s)	582
Kzo9I	GATC	6 cut(s)	27, 57, 153, 310, 325, 506
LmnI	GCTCC	4 cut(s)	62, 95, 127, 416
LpnPI	CCDG	3 cut(s)	27, 286, 468
Lsp1109I	GCAGC	4 cut(s)	83, 346, 389, 695
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	4 cut(s)	51, 161, 396, 585
MaeII	ACGT	3 cut(s)	141, 255, 345
MaeIII	GTNAC	3 cut(s)	266, 433, 467
MalI	GATC	6 cut(s)	29, 59, 155, 312, 327, 508
MboI	GATC	6 cut(s)	27, 57, 153, 310, 325, 506
MboII	GAAGA	1 cut(s)	619
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	2 cut(s)	33, 775
MlyI	GAGTC	1 cut(s)	552
MnlI	CCTC	6 cut(s)	69, 118, 310, 471, 589, 610
MseI	TTAA	5 cut(s)	222, 581, 660, 762, 778
MspI	CCGG	2 cut(s)	273, 455
MspR9I	CCNGG	2 cut(s)	274, 456
Mva1269I	GAATGC	1 cut(s)	297
MvnI	CGCG	3 cut(s)	351, 382, 488
MwoI	GCNNNNNNNGC	3 cut(s)	71, 683, 753
NciI	CCSGG	2 cut(s)	274, 456
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	6 cut(s)	27, 57, 153, 310, 325, 506
NlaIII	CATG	5 cut(s)	95, 283, 293, 377, 674
NlaIV	GGNNCC	3 cut(s)	285, 412, 459
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	2 cut(s)	377, 674
PciI	ACATGT	1 cut(s)	670
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	640, 707
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	73, 358, 361, 379, 685
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
PpuMI	RGGWCCY	1 cut(s)	458
PscI	ACATGT	1 cut(s)	670
PsiI	TTATAA	2 cut(s)	38, 368
Psp1406I	AACGTT	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	458
PspN4I	GGNNCC	3 cut(s)	285, 412, 459
PspPI	GGNCC	3 cut(s)	88, 452, 458
PspPPI	RGGWCCY	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	310
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	3 cut(s)	424, 533, 657
RsaNI	GTAC	3 cut(s)	423, 532, 656
SaqAI	TTAA	5 cut(s)	222, 581, 660, 762, 778
SatI	GCNGC	5 cut(s)	72, 357, 360, 378, 684
Sau3AI	GATC	6 cut(s)	27, 57, 153, 310, 325, 506
Sau96I	GGNCC	3 cut(s)	88, 452, 458
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	2 cut(s)	274, 456
SfaNI	GCATC	1 cut(s)	670
SinI	GGWCC	3 cut(s)	88, 452, 458
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	33, 775
SsiI	CCGC	6 cut(s)	45, 287, 351, 356, 519, 747
SspMI	CTAG	4 cut(s)	51, 161, 396, 585
StyD4I	CCNGG	2 cut(s)	272, 454
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	7 cut(s)	182, 232, 467, 551, 561, 604, 626
TaiI	ACGT	3 cut(s)	144, 258, 348
TaqI	TCGA	7 cut(s)	152, 328, 386, 479, 505, 667, 773
TasI	AATT	2 cut(s)	33, 775
TatI	WGTACW	2 cut(s)	422, 655
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	640, 707
Tru1I	TTAA	5 cut(s)	222, 581, 660, 762, 778
Tru9I	TTAA	5 cut(s)	222, 581, 660, 762, 778
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	4 cut(s)	71, 359, 377, 683
Tsp45I	GTSAC	1 cut(s)	433
TspGWI	ACGGA	4 cut(s)	101, 209, 218, 258
VpaK11BI	GGWCC	3 cut(s)	88, 452, 458
XceI	RCATGY	2 cut(s)	377, 674
XspI	CTAG	4 cut(s)	51, 161, 396, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.