Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

19350672 .. 19352088

Gene Structure 1417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCTGGAAAAAGATTGGATGGCAAAATCGTAATTATTACTGGCGGAGCAAGCGGGATTGGGGCTGAGTCCGTTCGATTATTTACCGAACACGGCGCTCGAGTCGTGATCGTTGATGTACAGGATGAGCTCGGTCAAAACGTTGCAGTTTCGATCGGTGAAGACAAAGCGAGTTACTATCATTGCGATGTCACGAACGAGACGGAAGTTGAAAACGCCGTTAAGTTCACCGTCGAAAAATATGGGAAGCTTGACGTTCTGTTTAGTAACGCCGGCGTAATAGAGCCGTTTGTGAGCATCCTCGACTTAAACCTCAACGAGTTAGACCGAACGATCGCCATTAACCTCCGCGGCACAGCCGCATTCATCAAGCATGCTGCACGTGCCATGGTGGAGAAAGGCATCCGCGGCTCCATCGTTTGCACCACTAGCGTCGCGGCTGAGATCGCTGGCACGGCACCACACGGGTACACGACGTCGAAGCATGGGCTGTTGGGTTTGATCAAATCGGCTTCTGGTGGATTAGGAAAATATGGTATAAGAGTAAACGGCGTTGCTCCATTTGGTGTCGCAACACCGTTAGTTTGTAATGGTTTCAAGATGGAACCAAACGTGGTGGAGCAGAACACGTCAGCTTCGGCGAATCTAAAGGGCATTGTATTGAAAGCTCGTCACGTGGCAGAAGCTGCTCTGTTTTTAGCGTCCGATGAGTCGGCTTACGTTAGCGGACAGAACCTGGCTGTTGACGGTGGTTACTCGGTGGTGAAGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0046872 GO:0046914 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

257

Amino Acids

26.85

Weight (kDa)

6.31

Isoelectric Point (pI)

15.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 196	1.8e-46	short chain dehydrogenase
KR	PF08659	11 - 128	1.3e-06	KR domain
adh_short_C2	PF13561	17 - 253	1e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	457
AccII	CGCG	3 cut(s)	351, 408, 437
AciI	CCGC	9 cut(s)	45, 54, 349, 351, 360, 406, 408, 437, 726
AclI	AACGTT	1 cut(s)	141
AcvI	CACGTG	2 cut(s)	383, 676
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	2 cut(s)	120, 470
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	3 cut(s)	212, 598, 664
AjiI	CACGTC	1 cut(s)	630
AjnI	CCWGG	1 cut(s)	735
AluBI	AGCT	5 cut(s)	130, 250, 635, 668, 686
AluI	AGCT	5 cut(s)	130, 250, 635, 668, 686
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	194
AlwNI	CAGNNNCTG	2 cut(s)	686, 736
Ama87I	CYCGRG	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	377, 686
AspLEI	GCGC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	170, 220
AvaI	CYCGRG	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	132
BbrPI	CACGTG	2 cut(s)	383, 676
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	364, 673
BccI	CCATC	3 cut(s)	14, 422, 595
BceAI	ACGGC	6 cut(s)	109, 203, 271, 471, 565, 754
BciT130I	CCWGG	1 cut(s)	737
BclI	TGATCA	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	6 cut(s)	352, 360, 378, 409, 438, 687
BlsI	GCNGC	6 cut(s)	353, 361, 379, 410, 439, 688
Bme1390I	CCNGG	1 cut(s)	737
BmeT110I	CYCGRG	1 cut(s)	99
BmgBI	CACGTC	1 cut(s)	630
BmiI	GGNNCC	3 cut(s)	412, 459, 606
BmrFI	CCNGG	1 cut(s)	737
BmsI	GCATC	2 cut(s)	306, 411
BpiI	GAAGAC	1 cut(s)	168
BsaAI	YACGTR	2 cut(s)	383, 676
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	349, 387, 406
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	3 cut(s)	349, 387, 406
BseGI	GGATG	4 cut(s)	25, 130, 297, 402
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	57, 432
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	364, 673
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	3 cut(s)	351, 408, 437
Bsh1285I	CGRYCG	2 cut(s)	156, 336
BshNI	GGYRCC	1 cut(s)	457
BsiEI	CGRYCG	2 cut(s)	156, 336
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	5 cut(s)	108, 153, 333, 444, 501
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	9 cut(s)	45, 54, 349, 351, 360, 406, 408, 437, 726
BspCNI	CTCAG	2 cut(s)	58, 433
BspFNI	CGCG	3 cut(s)	351, 408, 437
BspLI	GGNNCC	3 cut(s)	412, 459, 606
BspT107I	GGYRCC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	3 cut(s)	349, 387, 406
BssMI	GATC	5 cut(s)	108, 153, 333, 444, 501
BssNI	GRCGYC	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	3 cut(s)	232, 579, 749
BstACI	GRCGYC	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	118
BstBAI	YACGTR	2 cut(s)	383, 676
BstC8I	GCNNGC	4 cut(s)	52, 274, 375, 451
BstDEI	CTNAG	2 cut(s)	66, 441
BstDSI	CCRYGG	3 cut(s)	349, 387, 406
BstF5I	GGATG	4 cut(s)	25, 130, 297, 402
BstFNI	CGCG	3 cut(s)	351, 408, 437
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	5 cut(s)	111, 156, 336, 447, 504
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	5 cut(s)	108, 153, 333, 444, 501
BstMCI	CGRYCG	2 cut(s)	156, 336
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 383, 408, 429, 446, 455, 686
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	735
BstUI	CGCG	3 cut(s)	351, 408, 437
BstV1I	GCAGC	2 cut(s)	364, 673
BstV2I	GAAGAC	1 cut(s)	168
BtgI	CCRYGG	3 cut(s)	349, 387, 406
BtgZI	GCGATG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	630
BtsCI	GGATG	4 cut(s)	25, 130, 297, 402
Cac8I	GCNNGC	4 cut(s)	52, 274, 375, 451
CaiI	CAGNNNCTG	2 cut(s)	686, 736
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	272
Cfr42I	CCGCGG	2 cut(s)	352, 409
CseI	GACGC	2 cut(s)	421, 690
Csp6I	GTAC	2 cut(s)	119, 469
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviAII	CATG	3 cut(s)	374, 388, 485
CviQI	GTAC	2 cut(s)	119, 469
DdeI	CTNAG	2 cut(s)	66, 441
DpnI	GATC	5 cut(s)	110, 155, 335, 446, 503
DpnII	GATC	5 cut(s)	108, 153, 333, 444, 501
EciI	GGCGGA	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
Eco72I	CACGTG	2 cut(s)	383, 676
Eco88I	CYCGRG	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	735
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	3 cut(s)	377, 391, 488
FaiI	YATR	6 cut(s)	243, 375, 389, 486, 534, 539
FatI	CATG	3 cut(s)	373, 387, 484
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	6 cut(s)	352, 360, 378, 409, 438, 687
FokI	GGATG	4 cut(s)	32, 137, 284, 389
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	6 cut(s)	352, 360, 378, 409, 438, 687
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	6 cut(s)	352, 360, 378, 409, 438, 687
HaeII	RGCGCY	1 cut(s)	99
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	2 cut(s)	421, 690
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	3 cut(s)	377, 391, 488
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	4 cut(s)	68, 102, 643, 710
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	170, 220
Hpy166II	GTNNAC	4 cut(s)	228, 471, 547, 745
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	4 cut(s)	6, 106, 193, 598
Hpy8I	GTNNAC	4 cut(s)	228, 471, 547, 745
Hpy99I	CGWCG	4 cut(s)	236, 437, 478, 481
HpyCH4III	ACNGT	3 cut(s)	232, 579, 749
HpyCH4IV	ACGT	8 cut(s)	141, 255, 382, 476, 612, 629, 675, 720
HpyCH4V	TGCA	3 cut(s)	146, 380, 423
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 383, 408, 429, 446, 455, 686
HpyF3I	CTNAG	2 cut(s)	66, 441
HpySE526I	ACGT	8 cut(s)	141, 255, 382, 476, 612, 629, 675, 720
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	3 cut(s)	377, 391, 488
HspAI	GCGC	1 cut(s)	96
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	501
KspI	CCGCGG	2 cut(s)	352, 409
Kzo9I	GATC	5 cut(s)	108, 153, 333, 444, 501
LmnI	GCTCC	4 cut(s)	47, 416, 562, 619
LpnPI	CCDG	7 cut(s)	27, 107, 286, 435, 501, 722, 749
Lsp1109I	GCAGC	2 cut(s)	364, 673
LweI	GCATC	2 cut(s)	306, 411
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	8 cut(s)	141, 255, 382, 476, 612, 629, 675, 720
MaeIII	GTNAC	5 cut(s)	173, 190, 266, 671, 752
MalI	GATC	5 cut(s)	110, 155, 335, 446, 503
MboI	GATC	5 cut(s)	108, 153, 333, 444, 501
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	33
MlyI	GAGTC	3 cut(s)	77, 111, 719
MnlI	CCTC	3 cut(s)	311, 323, 356
MreI	CGCCGGCG	1 cut(s)	272
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	3 cut(s)	222, 308, 342
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	351, 408
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	737
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	737
MvnI	CGCG	3 cut(s)	351, 408, 437
MwoI	GCNNNNNNNGC	7 cut(s)	51, 383, 408, 429, 446, 455, 686
NaeI	GCCGGC	1 cut(s)	274
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	5 cut(s)	108, 153, 333, 444, 501
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	3 cut(s)	377, 391, 488
NlaIV	GGNNCC	3 cut(s)	412, 459, 606
NmuCI	GTSAC	2 cut(s)	190, 671
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	362
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	643
PkrI	GCNGC	6 cut(s)	353, 361, 379, 410, 439, 688
Ple19I	CGATCG	2 cut(s)	156, 336
PleI	GAGTC	3 cut(s)	76, 110, 718
PmaCI	CACGTG	2 cut(s)	383, 676
PmlI	CACGTG	2 cut(s)	383, 676
PpsI	GAGTC	3 cut(s)	76, 110, 718
Ppu21I	YACGTR	2 cut(s)	383, 676
Psp124BI	GAGCTC	1 cut(s)	132
Psp1406I	AACGTT	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	735
PspCI	CACGTG	2 cut(s)	383, 676
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	3 cut(s)	412, 459, 606
PspXI	VCTCGAGB	1 cut(s)	99
PstNI	CAGNNNCTG	2 cut(s)	686, 736
PvuI	CGATCG	2 cut(s)	156, 336
RsaI	GTAC	2 cut(s)	120, 470
RsaNI	GTAC	2 cut(s)	119, 469
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	132
SacII	CCGCGG	2 cut(s)	352, 409
SaqAI	TTAA	3 cut(s)	222, 308, 342
SatI	GCNGC	6 cut(s)	352, 360, 378, 409, 438, 687
Sau3AI	GATC	5 cut(s)	108, 153, 333, 444, 501
SchI	GAGTC	3 cut(s)	77, 111, 719
ScrFI	CCNGG	1 cut(s)	737
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	306, 411
Sfr274I	CTCGAG	1 cut(s)	99
Sfr303I	CCGCGG	2 cut(s)	352, 409
SgrAI	CRCCGGYG	1 cut(s)	272
SgrBI	CCGCGG	2 cut(s)	352, 409
SlaI	CTCGAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	9 cut(s)	45, 54, 349, 351, 360, 406, 408, 437, 726
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	735
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	232, 579, 749
TaiI	ACGT	8 cut(s)	144, 258, 385, 479, 615, 632, 678, 723
TaqI	TCGA	6 cut(s)	76, 100, 152, 234, 303, 479
TaqII	GACCGA	2 cut(s)	122, 342
TasI	AATT	1 cut(s)	33
TatI	WGTACW	1 cut(s)	118
TauI	GCSGC	4 cut(s)	354, 362, 411, 440
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	3 cut(s)	222, 308, 342
Tru9I	TTAA	3 cut(s)	222, 308, 342
TseFI	GTSAC	2 cut(s)	190, 671
TseI	GCWGC	2 cut(s)	377, 686
Tsp45I	GTSAC	2 cut(s)	190, 671
TspDTI	ATGAA	1 cut(s)	355
TspGWI	ACGGA	2 cut(s)	61, 218
XceI	RCATGY	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	99
XspI	CTAG	1 cut(s)	429
ZraI	GACGTC	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.