Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

258210 .. 260041

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001136.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgggtgacgagcacggtgatgaacacaggctacagaacttgatccaagatctccctcttatcatcagagataatcacaggttggagggcaaggtggctctcatcactggtgcagctggtggcattggtgaggaagcagcaagactttttgcagcgaatggagcttttgttgtcgtagctgatattcaagatgaattgggtcttcaagttgtagcctcaatagcctcggaaagagtctcttacttccactgcgacgtcagagacgaaaaccaagttgaacaaacagtaggtttcgcattggaaaaatacggtagcctagacgttttgttcagcaatgcaggcattatgggtccaatgaccggcattttagacctcgacattcaaggtttcgacaacacaatgatcataaatgtccgtggagttgcagcgacaatcaagcacgccgcgcgtgccatggttgctagaaaaatccgaggttcagttatatgcactacaagcgttgcaagttcacttggaggtacagctccacatgcttatacaacatcgaaacatgccttaatcgggttggtgagatcggcttgcagtgagcttggtgcttatgggattcgagtgaactccatttccccatttggtgttgcaacccctctttcgtgcaaggcttataacttggagccgaaagaggtcgaagccaatagtagtgtcattgcaaacttgaaggggactgtgttgaaggctaggcatatcgcagaggcagctatgtttcttgcttcagatgaatcctgttacgttagcggacacaacttggttgttgatggaggcttctcggtggttgatcacagtattccacccgccaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

285

Amino Acids

30.05

Weight (kDa)

5.54

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AatII	GACGTC	1 cut(s)	258
AccII	CGCG	2 cut(s)	446, 448
AciI	CCGC	3 cut(s)	444, 792, 849
AclWI	GGATC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	753
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	2 cut(s)	359, 561
AgsI	TTSAA	6 cut(s)	188, 206, 278, 383, 715, 730
AloI	GAACNNNNNNTCC	2 cut(s)	605, 637
AluBI	AGCT	6 cut(s)	116, 164, 179, 524, 589, 755
AluI	AGCT	6 cut(s)	116, 164, 179, 524, 589, 755
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	241, 255
AlwI	GGATC	1 cut(s)	37
ApeKI	GCWGC	5 cut(s)	113, 137, 152, 425, 752
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	4 cut(s)	17, 29, 140, 580
AvaII	GGWCC	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	5 cut(s)	125, 149, 164, 437, 764
BccI	CCATC	1 cut(s)	806
BclI	TGATCA	2 cut(s)	402, 832
BcoDI	GTCTC	2 cut(s)	241, 255
BfaI	CTAG	3 cut(s)	317, 462, 735
BfmI	CTRYAG	1 cut(s)	32
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	6 cut(s)	114, 138, 153, 426, 444, 753
BlsI	GCNGC	6 cut(s)	115, 139, 154, 427, 445, 754
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	351, 672
BpiI	GAAGAC	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	225, 415, 453, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 561
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	2 cut(s)	340, 702
BseDI	CCNNGG	4 cut(s)	225, 415, 453, 472
BseLI	CCNNNNNNNGG	2 cut(s)	359, 561
BseMI	GCAATG	2 cut(s)	340, 702
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	5 cut(s)	125, 149, 164, 437, 764
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	2 cut(s)	446, 448
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	2 cut(s)	359, 561
BsmAI	GTCTC	2 cut(s)	241, 255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	733
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	5 cut(s)	42, 49, 402, 572, 832
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	3 cut(s)	444, 792, 849
BspFNI	CGCG	2 cut(s)	446, 448
BspLI	GGNNCC	2 cut(s)	351, 672
BspPI	GGATC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	340, 702
BsrFI	RCCGGY	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	4 cut(s)	225, 415, 453, 472
BssMI	GATC	5 cut(s)	42, 49, 402, 572, 832
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	5 cut(s)	17, 286, 311, 724, 839
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	340, 441, 450, 580
BstDSI	CCRYGG	2 cut(s)	415, 453
BstFNI	CGCG	2 cut(s)	446, 448
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	5 cut(s)	45, 52, 405, 575, 835
BstMAI	GTCTC	2 cut(s)	241, 255
BstMBI	GATC	5 cut(s)	42, 49, 402, 572, 832
BstMWI	GCNNNNNNNGC	9 cut(s)	161, 221, 339, 445, 449, 458, 495, 530, 752
BstNSI	RCATGY	2 cut(s)	533, 554
BstSFI	CTRYAG	1 cut(s)	32
BstUI	CGCG	2 cut(s)	446, 448
BstV1I	GCAGC	5 cut(s)	125, 149, 164, 437, 764
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BtgI	CCRYGG	2 cut(s)	415, 453
BtsI	GCAGTG	2 cut(s)	247, 589
BtsIMutI	CAGTG	3 cut(s)	105, 247, 589
Cac8I	GCNNGC	4 cut(s)	340, 441, 450, 580
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	519
CviAII	CATG	3 cut(s)	454, 530, 551
CviQI	GTAC	1 cut(s)	519
DpnI	GATC	5 cut(s)	44, 51, 404, 574, 834
DpnII	GATC	5 cut(s)	42, 49, 402, 572, 832
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	3 cut(s)	457, 533, 554
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	3 cut(s)	453, 529, 550
FauI	CCCGC	1 cut(s)	856
FbaI	TGATCA	2 cut(s)	402, 832
Fnu4HI	GCNGC	6 cut(s)	114, 138, 153, 426, 444, 753
Fsp4HI	GCNGC	6 cut(s)	114, 138, 153, 426, 444, 753
FspBI	CTAG	3 cut(s)	317, 462, 735
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	6 cut(s)	114, 138, 153, 426, 444, 753
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	457, 533, 554
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	3 cut(s)	234, 604, 776
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	4 cut(s)	17, 29, 140, 580
Hpy166II	GTNNAC	2 cut(s)	509, 613
Hpy188I	TCNGA	5 cut(s)	68, 229, 260, 473, 772
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	509, 613
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	709, 724
HpyCH4III	ACNGT	5 cut(s)	17, 286, 311, 724, 839
HpyCH4IV	ACGT	3 cut(s)	255, 321, 786
HpyF10VI	GCNNNNNNNGC	9 cut(s)	161, 221, 339, 445, 449, 458, 495, 530, 752
HpySE526I	ACGT	3 cut(s)	255, 321, 786
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	457, 533, 554
HspAI	GCGC	1 cut(s)	446
Ksp22I	TGATCA	2 cut(s)	402, 832
Kzo9I	GATC	5 cut(s)	42, 49, 402, 572, 832
LmnI	GCTCC	3 cut(s)	161, 529, 670
LpnPI	CCDG	7 cut(s)	13, 64, 93, 102, 324, 373, 793
Lsp1109I	GCAGC	5 cut(s)	125, 149, 164, 437, 764
MaeI	CTAG	3 cut(s)	317, 462, 735
MaeII	ACGT	3 cut(s)	255, 321, 786
MaeIII	GTNAC	2 cut(s)	5, 782
MalI	GATC	5 cut(s)	44, 51, 404, 574, 834
MboI	GATC	5 cut(s)	42, 49, 402, 572, 832
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	360
MvnI	CGCG	2 cut(s)	446, 448
MwoI	GCNNNNNNNGC	9 cut(s)	161, 221, 339, 445, 449, 458, 495, 530, 752
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	5 cut(s)	42, 49, 402, 572, 832
NlaIII	CATG	3 cut(s)	457, 533, 554
NlaIV	GGNNCC	2 cut(s)	351, 672
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	2 cut(s)	533, 554
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	604, 776
PkrI	GCNGC	6 cut(s)	115, 139, 154, 427, 445, 754
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	351, 672
PspPI	GGNCC	1 cut(s)	350
PsrI	GAACNNNNNNTAC	2 cut(s)	15, 47
PsuI	RGATCY	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	6 cut(s)	114, 138, 153, 426, 444, 753
Sau3AI	GATC	5 cut(s)	42, 49, 402, 572, 832
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	15
SfcI	CTRYAG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	3 cut(s)	444, 792, 849
SspMI	CTAG	3 cut(s)	317, 462, 735
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	5 cut(s)	17, 286, 311, 724, 839
TaiI	ACGT	3 cut(s)	258, 324, 789
TaqI	TCGA	5 cut(s)	375, 390, 545, 607, 684
TasI	AATT	1 cut(s)	194
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	604, 776
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	3 cut(s)	112, 254, 589
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	5 cut(s)	113, 137, 152, 425, 752
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	36, 207, 789
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	3 cut(s)	112, 254, 589
VpaK11BI	GGWCC	1 cut(s)	350
XceI	RCATGY	2 cut(s)	533, 554
XspI	CTAG	3 cut(s)	317, 462, 735
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.