Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

31501362 .. 31513929

Gene Structure 12568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG310600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGTTTGGGATCGAAGGTTTCTAATATTGAAGATGCTACCGATCCAAGAGAAGAAGATTCATTTGGAAGTTTGAGCATAACCATAAAGAATACAAGCATTTCATCATCCTCATCATCAATGTCTAAGCCAAGGTTGGAGGGCAAGGTGGCCCTCATCACTGGTGCAGCTGGTGGCATTGGTGAGGAAGCAGCAAGACTTTTCGCAGCGAATGGAGCTTTCGTTGTCGTAGCTGATATTCAAGACGAATTGGGTCTTCAAGTTGTGGCCTCAATAGCCTCGGAAAGAGTCTCATACTTCCACTGCGACGTCAGAGACGAAAACCAAGTTGAACAAACAGTAAGTTACACATTGGAAAAATACGGCAGCCTAAATATTTTGTTCAGCAATGCAGGCATTATGGGTCCAATGACTGGCATTTTAGACCTCGACATCCAAGGTTTCGACAACACAATGATCACAAATGTCCGCGGAGTTGCAGCAACAATCAAGCACGCCACGCGTGCCATGGTGGCTAGAAAAATCCGCGGTTCAATTATATGCACTACAAGCGTTGCAGGTTCACTTGGAGGTACAGCTCCACATGCTTATACAACATCAAAACATGCCTTAATCGGGTTGGTGAGATCGGCTTGCAGTGAGCTTGGTGCTTATGGGATTCGAGTAAATTGTATTTCCCCATTTGGTGTTGCAACGCCTCTTTCGTGTAAGGCTTATAACTTGGAGCCGAATGAGGTCGAAGCCAACAGCTGTGCCATTGCAAACTTGAAGGGGACTGTGTTGAAGGCTAGGCATGTCGCAGAGGCAGCTCTGTTCCTTGCTTCAGATGAATCGGGTTACGTTAGCGGACACAACTTAGTTGTTGATGGAGGCTTCTCGGTGGTTGATCACAGTTTTTCACCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

302

Amino Acids

31.54

Weight (kDa)

5.51

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	49 - 235	2.5e-47	short chain dehydrogenase
KR	PF08659	51 - 211	1.3e-08	KR domain
adh_short_C2	PF13561	55 - 293	5.6e-61	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	717
AatII	GACGTC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	548
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccII	CGCG	3 cut(s)	471, 502, 528
AciI	CCGC	5 cut(s)	469, 471, 526, 528, 846
AclWI	GGATC	2 cut(s)	19, 38
AcuI	CTGAAG	1 cut(s)	807
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	2 cut(s)	413, 615
AflIII	ACRYGT	1 cut(s)	500
AgsI	TTSAA	7 cut(s)	32, 242, 260, 332, 534, 769, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	7 cut(s)	170, 218, 233, 578, 643, 750, 809
AluI	AGCT	7 cut(s)	170, 218, 233, 578, 643, 750, 809
Alw26I	GTCTC	2 cut(s)	295, 309
AlwI	GGATC	2 cut(s)	19, 38
AoxI	GGCC	2 cut(s)	150, 267
ApeKI	GCWGC	6 cut(s)	167, 191, 206, 366, 479, 806
AspS9I	GGNCC	2 cut(s)	151, 404
AsuHPI	GGTGA	3 cut(s)	194, 634, 891
AvaII	GGWCC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	6 cut(s)	179, 203, 218, 378, 491, 818
BccI	CCATC	1 cut(s)	860
BceAI	ACGGC	1 cut(s)	379
BclI	TGATCA	2 cut(s)	456, 886
BcoDI	GTCTC	2 cut(s)	295, 309
BfaI	CTAG	2 cut(s)	516, 789
BfuAI	ACCTGC	1 cut(s)	548
BglI	GCCNNNNNGGC	1 cut(s)	512
BisI	GCNGC	6 cut(s)	168, 192, 207, 367, 480, 807
BlsI	GCNGC	6 cut(s)	169, 193, 208, 368, 481, 808
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	151, 404
BmiI	GGNNCC	2 cut(s)	405, 726
BmsI	GCATC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	6 cut(s)	131, 279, 436, 469, 507, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 615
Bse1I	ACTGG	2 cut(s)	166, 418
Bse3DI	GCAATG	2 cut(s)	394, 756
BseDI	CCNNGG	6 cut(s)	131, 279, 436, 469, 507, 526
BseGI	GGATG	2 cut(s)	107, 432
BseLI	CCNNNNNNNGG	2 cut(s)	413, 615
BseMI	GCAATG	2 cut(s)	394, 756
BseNI	ACTGG	2 cut(s)	166, 418
BseXI	GCAGC	6 cut(s)	179, 203, 218, 378, 491, 818
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	3 cut(s)	471, 502, 528
BshFI	GGCC	2 cut(s)	152, 269
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	2 cut(s)	413, 615
BsmAI	GTCTC	2 cut(s)	295, 309
BsmBI	CGTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	2 cut(s)	152, 269
Bsp143I	GATC	5 cut(s)	11, 43, 456, 626, 886
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	5 cut(s)	469, 471, 526, 528, 846
BspANI	GGCC	2 cut(s)	152, 269
BspFNI	CGCG	3 cut(s)	471, 502, 528
BspLI	GGNNCC	2 cut(s)	405, 726
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	19, 38
BsrDI	GCAATG	2 cut(s)	394, 756
BsrI	ACTGG	2 cut(s)	166, 418
BssECI	CCNNGG	6 cut(s)	131, 279, 436, 469, 507, 526
BssMI	GATC	5 cut(s)	11, 43, 456, 626, 886
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	3 cut(s)	131, 436, 507
Bst4CI	ACNGT	3 cut(s)	340, 778, 893
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	4 cut(s)	394, 495, 504, 634
BstDEI	CTNAG	2 cut(s)	126, 856
BstDSI	CCRYGG	3 cut(s)	469, 507, 526
BstF5I	GGATG	2 cut(s)	107, 432
BstFNI	CGCG	3 cut(s)	471, 502, 528
BstKTI	GATC	5 cut(s)	14, 46, 459, 629, 889
BstMAI	GTCTC	2 cut(s)	295, 309
BstMBI	GATC	5 cut(s)	11, 43, 456, 626, 886
BstMWI	GCNNNNNNNGC	9 cut(s)	215, 275, 393, 499, 503, 512, 549, 584, 806
BstNSI	RCATGY	3 cut(s)	587, 608, 797
BstUI	CGCG	3 cut(s)	471, 502, 528
BstV1I	GCAGC	6 cut(s)	179, 203, 218, 378, 491, 818
BstV2I	GAAGAC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	152, 269
BtgI	CCRYGG	3 cut(s)	469, 507, 526
BtsCI	GGATG	2 cut(s)	107, 432
BtsI	GCAGTG	2 cut(s)	301, 643
BtsIMutI	CAGTG	3 cut(s)	159, 301, 643
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	4 cut(s)	394, 495, 504, 634
Cfr13I	GGNCC	2 cut(s)	151, 404
Cfr42I	CCGCGG	2 cut(s)	472, 529
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	4 cut(s)	508, 584, 605, 794
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	2 cut(s)	126, 856
DpnI	GATC	5 cut(s)	13, 45, 458, 628, 888
DpnII	GATC	5 cut(s)	11, 43, 456, 626, 886
Eco130I	CCWWGG	3 cut(s)	131, 436, 507
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	807
EcoT14I	CCWWGG	3 cut(s)	131, 436, 507
ErhI	CCWWGG	3 cut(s)	131, 436, 507
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	4 cut(s)	511, 587, 608, 797
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	4 cut(s)	507, 583, 604, 793
FbaI	TGATCA	2 cut(s)	456, 886
Fnu4HI	GCNGC	6 cut(s)	168, 192, 207, 367, 480, 807
FokI	GGATG	2 cut(s)	94, 419
Fsp4HI	GCNGC	6 cut(s)	168, 192, 207, 367, 480, 807
FspBI	CTAG	2 cut(s)	516, 789
GluI	GCNGC	6 cut(s)	168, 192, 207, 367, 480, 807
HaeIII	GGCC	2 cut(s)	152, 269
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	4 cut(s)	511, 587, 608, 797
HinfI	GANTC	4 cut(s)	59, 288, 658, 830
HphI	GGTGA	3 cut(s)	194, 634, 891
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	3 cut(s)	283, 314, 826
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	563
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	10, 763, 778
HpyCH4III	ACNGT	3 cut(s)	340, 778, 893
HpyCH4IV	ACGT	2 cut(s)	309, 840
HpyCH4V	TGCA	8 cut(s)	167, 392, 479, 543, 557, 636, 692, 761
HpyF10VI	GCNNNNNNNGC	9 cut(s)	215, 275, 393, 499, 503, 512, 549, 584, 806
HpyF3I	CTNAG	2 cut(s)	126, 856
HpySE526I	ACGT	2 cut(s)	309, 840
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	511, 587, 608, 797
Ksp22I	TGATCA	2 cut(s)	456, 886
KspI	CCGCGG	2 cut(s)	472, 529
Kzo9I	GATC	5 cut(s)	11, 43, 456, 626, 886
LmnI	GCTCC	3 cut(s)	215, 583, 724
LpnPI	CCDG	5 cut(s)	147, 156, 378, 399, 543
Lsp1109I	GCAGC	6 cut(s)	179, 203, 218, 378, 491, 818
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	516, 789
MaeII	ACGT	2 cut(s)	309, 840
MaeIII	GTNAC	2 cut(s)	344, 836
MalI	GATC	5 cut(s)	13, 45, 458, 628, 888
MboI	GATC	5 cut(s)	11, 43, 456, 626, 886
MboII	GAAGA	4 cut(s)	44, 65, 68, 248
MluCI	AATT	3 cut(s)	248, 534, 667
MluI	ACGCGT	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	117
MseI	TTAA	1 cut(s)	611
MspA1I	CMGCKG	4 cut(s)	170, 471, 528, 750
MvnI	CGCG	3 cut(s)	471, 502, 528
MwoI	GCNNNNNNNGC	9 cut(s)	215, 275, 393, 499, 503, 512, 549, 584, 806
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	5 cut(s)	11, 43, 456, 626, 886
NlaIII	CATG	4 cut(s)	511, 587, 608, 797
NlaIV	GGNNCC	2 cut(s)	405, 726
NspI	RCATGY	3 cut(s)	587, 608, 797
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 701
PfeI	GAWTC	3 cut(s)	59, 658, 830
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	6 cut(s)	169, 193, 208, 368, 481, 808
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	717
PspN4I	GGNNCC	2 cut(s)	405, 726
PspPI	GGNCC	2 cut(s)	151, 404
PvuII	CAGCTG	2 cut(s)	170, 750
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SacII	CCGCGG	2 cut(s)	472, 529
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	6 cut(s)	168, 192, 207, 367, 480, 807
Sau3AI	GATC	5 cut(s)	11, 43, 456, 626, 886
Sau96I	GGNCC	2 cut(s)	151, 404
SchI	GAGTC	1 cut(s)	297
SfaNI	GCATC	1 cut(s)	25
Sfr303I	CCGCGG	2 cut(s)	472, 529
SgrBI	CCGCGG	2 cut(s)	472, 529
SinI	GGWCC	1 cut(s)	404
Sse9I	AATT	3 cut(s)	248, 534, 667
SsiI	CCGC	5 cut(s)	469, 471, 526, 528, 846
SspI	AATATT	2 cut(s)	28, 376
SspMI	CTAG	2 cut(s)	516, 789
StyI	CCWWGG	3 cut(s)	131, 436, 507
TaaI	ACNGT	3 cut(s)	340, 778, 893
TaiI	ACGT	2 cut(s)	312, 843
TaqI	TCGA	5 cut(s)	14, 429, 444, 661, 738
TasI	AATT	3 cut(s)	248, 534, 667
TfiI	GAWTC	3 cut(s)	59, 658, 830
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	3 cut(s)	166, 308, 643
TseI	GCWGC	6 cut(s)	167, 191, 206, 366, 479, 806
TspDTI	ATGAA	3 cut(s)	51, 93, 843
TspRI	CASTG	3 cut(s)	166, 308, 643
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	404
XceI	RCATGY	3 cut(s)	587, 608, 797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XspI	CTAG	2 cut(s)	516, 789
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.