Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

19352324 .. 19353114

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGATGGCAAAATCGTGATTATAACAGGGGGAGCCAGTGGGACAGGAGCCGAATCCGCTAGGTTGTTCACTGACCACGGAGCTCAAGTGGTTGTAGTTGACTTACAAGAAGAGCAAGGCAAAACGTCGCCGTTTCAATCGGCAAAGACAGAGCAAGTTTTTACCGTTGTGATGTTACAAACGAGACGGAACCAACCCGGCGTCTTGGAAACACCGGGAAGCATCCTTGATTTGAATCTTGAACGGTTTCACCGAACAATGGCTGTCAACGTTCGTGGAGCGGCTGTGTCTATCAAACACGCCGCACGAGCCATGGTGGAGAAAGGCACACGTGGCTCCATCGTTTGTACGACCAGTGTTACGTCGGAGATCGTGGTCAGGGACCTCATGAATACACGGCGTCGAAGCATGGGCTCTCACGACGAGGAGACGGCGAAGCAGACGGAGGAGTATTGCGAAGCCAGAGGGATTTTTAAAGGTGTTGTGTTAAAGGCTCGACACGTGGCAGAAGCTGCTCTGTTTCTCGCTTCGGATGATTCGGTTTATATCAGTGGTCAGAATTTAGCAGTGGACGGTGGTTTTTGCGTCGTTAAGCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0046872 GO:0046914 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

200

Amino Acids

21.54

Weight (kDa)

6.97

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	4 - 56	6.3e-06	short chain dehydrogenase
adh_short	PF00106	70 - 123	3.8e-06	short chain dehydrogenase
adh_short_C2	PF13561	71 - 128	2.5e-08	Enoyl-(Acyl carrier protein) reductase
adh_short_C2	PF13561	145 - 194	9.2e-09	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	281
AciI	CCGC	3 cut(s)	57, 281, 303
AclI	AACGTT	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	559
AcvI	CACGTG	2 cut(s)	332, 502
AcyI	GRCGYC	2 cut(s)	201, 400
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	2 cut(s)	329, 499
AgsI	TTSAA	3 cut(s)	137, 235, 242
AluBI	AGCT	2 cut(s)	83, 512
AluI	AGCT	2 cut(s)	83, 512
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	178, 422
AlwNI	CAGNNNCTG	1 cut(s)	512
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	2 cut(s)	198, 216
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	382
BanII	GRGCYC	2 cut(s)	85, 416
BauI	CACGAG	1 cut(s)	306
BbrPI	CACGTG	2 cut(s)	332, 502
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	347
BceAI	ACGGC	3 cut(s)	115, 413, 447
BcnI	CCSGG	2 cut(s)	198, 216
BcoDI	GTCTC	2 cut(s)	178, 422
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	3 cut(s)	282, 303, 513
BlsI	GCNGC	3 cut(s)	283, 304, 514
Bme1390I	CCNGG	2 cut(s)	198, 216
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	5 cut(s)	34, 49, 191, 337, 383
BmrFI	CCNGG	2 cut(s)	198, 216
BmsI	GCATC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	198, 216
BsaAI	YACGTR	2 cut(s)	332, 502
BsaBI	GATNNNNATC	1 cut(s)	234
BsaHI	GRCGYC	2 cut(s)	201, 400
BsaJI	CCNNGG	2 cut(s)	76, 312
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	36, 354
Bse8I	GATNNNNATC	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	76, 312
BseGI	GGATG	3 cut(s)	10, 222, 538
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	36, 354
BseRI	GAGGAG	2 cut(s)	440, 461
BseXI	GCAGC	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	198, 215
BslFI	GGGAC	2 cut(s)	55, 395
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	178, 422
BsmBI	CGTCTC	2 cut(s)	178, 422
BsmFI	GGGAC	2 cut(s)	55, 395
Bsp1286I	GDGCHC	2 cut(s)	85, 416
Bsp143I	GATC	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	3 cut(s)	57, 281, 303
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	5 cut(s)	34, 49, 191, 337, 383
BspQI	GCTCTTC	1 cut(s)	105
BsrBI	CCGCTC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	36, 354
BssECI	CCNNGG	2 cut(s)	76, 312
BssMI	GATC	1 cut(s)	369
BssNI	GRCGYC	2 cut(s)	201, 400
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	306
Bst4CI	ACNGT	3 cut(s)	166, 246, 575
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	2 cut(s)	201, 400
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBAI	YACGTR	2 cut(s)	332, 502
BstDSI	CCRYGG	2 cut(s)	76, 312
BstF5I	GGATG	3 cut(s)	10, 222, 538
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	2 cut(s)	178, 422
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 308, 333, 512
BstSCI	CCNGG	2 cut(s)	196, 214
BstV1I	GCAGC	1 cut(s)	499
BtgI	CCRYGG	2 cut(s)	76, 312
BtsCI	GGATG	3 cut(s)	10, 222, 538
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	5 cut(s)	43, 69, 361, 556, 573
CaiI	CAGNNNCTG	1 cut(s)	512
CciI	TCATGA	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	382
CseI	GACGC	3 cut(s)	190, 389, 574
Csp6I	GTAC	1 cut(s)	348
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	3 cut(s)	313, 388, 409
CviQI	GTAC	1 cut(s)	348
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
DraI	TTTAAA	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	2 cut(s)	85, 416
Eco47I	GGWCC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	83
Eco72I	CACGTG	2 cut(s)	332, 502
EcoICRI	GAGCTC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	2 cut(s)	85, 416
ErhI	CCWWGG	1 cut(s)	312
Esp3I	CGTCTC	2 cut(s)	178, 422
FaeI	CATG	3 cut(s)	316, 391, 412
FaiI	YATR	5 cut(s)	23, 314, 389, 410, 546
FaqI	GGGAC	2 cut(s)	55, 395
FatI	CATG	3 cut(s)	312, 387, 408
Fnu4HI	GCNGC	3 cut(s)	282, 303, 513
FokI	GGATG	3 cut(s)	17, 209, 545
FriOI	GRGCYC	2 cut(s)	85, 416
Fsp4HI	GCNGC	3 cut(s)	282, 303, 513
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	3 cut(s)	282, 303, 513
HapII	CCGG	2 cut(s)	198, 215
HgaI	GACGC	3 cut(s)	190, 389, 574
Hin1I	GRCGYC	2 cut(s)	201, 400
Hin1II	CATG	3 cut(s)	316, 391, 412
HincII	GTYRAC	2 cut(s)	100, 268
HindII	GTYRAC	2 cut(s)	100, 268
HinfI	GANTC	3 cut(s)	53, 235, 536
HpaII	CCGG	2 cut(s)	198, 215
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	4 cut(s)	69, 100, 268, 571
Hpy188I	TCNGA	3 cut(s)	367, 532, 558
Hpy188III	TCNNGA	4 cut(s)	16, 239, 388, 419
Hpy8I	GTNNAC	4 cut(s)	69, 100, 268, 571
Hpy99I	CGWCG	5 cut(s)	130, 367, 405, 425, 590
HpyCH4III	ACNGT	3 cut(s)	166, 246, 575
HpyCH4IV	ACGT	5 cut(s)	125, 270, 331, 362, 501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 308, 333, 512
HpySE526I	ACGT	5 cut(s)	125, 270, 331, 362, 501
Hsp92I	GRCGYC	2 cut(s)	201, 400
Hsp92II	CATG	3 cut(s)	316, 391, 412
Kzo9I	GATC	1 cut(s)	369
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	5 cut(s)	32, 47, 80, 278, 341
LpnPI	CCDG	8 cut(s)	12, 30, 49, 211, 228, 364, 367, 475
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	5 cut(s)	125, 270, 331, 362, 501
MaeIII	GTNAC	2 cut(s)	174, 358
MalI	GATC	1 cut(s)	371
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	1 cut(s)	369
MboII	GAAGA	1 cut(s)	122
MhlI	GDGCHC	2 cut(s)	85, 416
MluCI	AATT	1 cut(s)	559
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	4 cut(s)	395, 418, 439, 458
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	3 cut(s)	474, 488, 591
MspI	CCGG	2 cut(s)	198, 215
MspR9I	CCNGG	2 cut(s)	198, 216
MwoI	GCNNNNNNNGC	4 cut(s)	56, 308, 333, 512
NciI	CCSGG	2 cut(s)	198, 216
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	3 cut(s)	316, 391, 412
NlaIV	GGNNCC	5 cut(s)	34, 49, 191, 337, 383
PagI	TCATGA	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	53, 235, 536
PkrI	GCNGC	3 cut(s)	283, 304, 514
PmaCI	CACGTG	2 cut(s)	332, 502
PmlI	CACGTG	2 cut(s)	332, 502
Ppu21I	YACGTR	2 cut(s)	332, 502
PpuMI	RGGWCCY	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	85
Psp1406I	AACGTT	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	382
PspCI	CACGTG	2 cut(s)	332, 502
PspN4I	GGNNCC	5 cut(s)	34, 49, 191, 337, 383
PspPI	GGNCC	1 cut(s)	382
PspPPI	RGGWCCY	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	474, 488, 591
SatI	GCNGC	3 cut(s)	282, 303, 513
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	2 cut(s)	198, 216
SduI	GDGCHC	2 cut(s)	85, 416
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	559
SsiI	CCGC	3 cut(s)	57, 281, 303
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	196, 214
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	166, 246, 575
TaiI	ACGT	5 cut(s)	128, 273, 334, 365, 504
TaqI	TCGA	2 cut(s)	403, 496
TasI	AATT	1 cut(s)	559
TauI	GCSGC	2 cut(s)	284, 305
TfiI	GAWTC	3 cut(s)	53, 235, 536
Tru1I	TTAA	3 cut(s)	474, 488, 591
Tru9I	TTAA	3 cut(s)	474, 488, 591
TscAI	CASTG	5 cut(s)	43, 76, 361, 556, 573
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	1 cut(s)	404
TspGWI	ACGGA	3 cut(s)	93, 202, 458
TspRI	CASTG	5 cut(s)	43, 76, 361, 556, 573
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.