Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Forward (+)

16898586 .. 16899463

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCTAAGCCAAGGTTGGAGGGCAAGGTGGCCCTCATCACTGGTGCAGCTAGTGGCATTGGTGAGGAAGCAGCAAGACTTTTCGCAGCGAATGGAGCTTTCGTTGTCGTAGCTGATATTCAAGACGAATTGGGTCTTCAAGTTGTGGCCTCAATAGCCTCGGAAAGAGTCTCATACTTCCACTGCGACGTTAGAGACGAAAACCAAGTTGAACAAACAGTAAGTTACACATTGGAAAAATACGGCAGCCTAAATATTTTGTTCAGCAATGCAGGCATTATGGGTCCAATGACTGGCATTTTAGACCTCGACATCCAAAGTTTCGACAACACAATGATCACAAATGTCGGCGGAGTTGCAGCGACAATCAAGCACGCCACGCGTGCCATGGTGGCTAGAAAAATCCGCGGTTCAGTTATATGCACTGCAAGCGTTGCAGGTTCACTTGGGGGTACAGCTCCACATGCTTACACAACATCAAAACATGCCTTAATCGGGTTGGTGAGATCGGCTTGCAGTGAGCTTGGTGCTTATGGGATTCGAGTAAATTGCATTTCCCCATTTGGTGTTGCAACCCCTCTTTCGTGTAAGGCTTATAACTTGGAGCCGAATGAGGTCGAAGCCAACAGCTGTGCCATTGCAAACTTGAAGGGGACTGTGTTGAAGGCTAGGCATGTCGCAGAGGCAGCTCTGTTCCTTGCTTCAGATGAATCGGGTTACGTTAGCGGACACAACTTAGTTGTTGATGGAGGCTTCTCAGTGGTTGATCACAGTTTTTCACCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

262

Amino Acids

27.31

Weight (kDa)

5.79

Isoelectric Point (pI)

26.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 195	3.8e-47	short chain dehydrogenase
KR	PF08659	11 - 171	1.4e-07	KR domain
adh_short_C2	PF13561	15 - 253	2.9e-60	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccII	CGCG	2 cut(s)	382, 408
AciI	CCGC	4 cut(s)	351, 406, 408, 726
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	293, 495
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	5 cut(s)	122, 140, 212, 649, 664
AluBI	AGCT	7 cut(s)	50, 98, 113, 458, 523, 630, 689
AluI	AGCT	7 cut(s)	50, 98, 113, 458, 523, 630, 689
Alw26I	GTCTC	2 cut(s)	175, 189
AoxI	GGCC	2 cut(s)	30, 147
ApeKI	GCWGC	6 cut(s)	47, 71, 86, 246, 359, 686
AspS9I	GGNCC	2 cut(s)	31, 284
AsuHPI	GGTGA	3 cut(s)	74, 514, 771
AvaII	GGWCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	6 cut(s)	59, 83, 98, 258, 371, 698
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BclI	TGATCA	2 cut(s)	336, 766
BcoDI	GTCTC	2 cut(s)	175, 189
BfaI	CTAG	3 cut(s)	51, 396, 669
BfuAI	ACCTGC	1 cut(s)	428
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
BlsI	GCNGC	6 cut(s)	49, 73, 88, 248, 361, 688
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	31, 284
BmiI	GGNNCC	2 cut(s)	285, 606
BpiI	GAAGAC	1 cut(s)	128
BsaJI	CCNNGG	4 cut(s)	11, 159, 387, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 495
Bse1I	ACTGG	2 cut(s)	46, 298
Bse3DI	GCAATG	2 cut(s)	274, 636
BseDI	CCNNGG	4 cut(s)	11, 159, 387, 406
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	293, 495
BseMI	GCAATG	2 cut(s)	274, 636
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	2 cut(s)	46, 298
BseXI	GCAGC	6 cut(s)	59, 83, 98, 258, 371, 698
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	2 cut(s)	382, 408
BshFI	GGCC	2 cut(s)	32, 149
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	293, 495
BsmAI	GTCTC	2 cut(s)	175, 189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	667
BsnI	GGCC	2 cut(s)	32, 149
Bsp143I	GATC	3 cut(s)	336, 506, 766
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	4 cut(s)	351, 406, 408, 726
BspANI	GGCC	2 cut(s)	32, 149
BspCNI	CTCAG	1 cut(s)	770
BspFNI	CGCG	2 cut(s)	382, 408
BspLI	GGNNCC	2 cut(s)	285, 606
BspMI	ACCTGC	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	274, 636
BsrI	ACTGG	2 cut(s)	46, 298
BssECI	CCNNGG	4 cut(s)	11, 159, 387, 406
BssMI	GATC	3 cut(s)	336, 506, 766
BssT1I	CCWWGG	2 cut(s)	11, 387
Bst4CI	ACNGT	3 cut(s)	220, 658, 773
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	5 cut(s)	274, 375, 384, 430, 514
BstDEI	CTNAG	3 cut(s)	6, 736, 757
BstDSI	CCRYGG	2 cut(s)	387, 406
BstF5I	GGATG	1 cut(s)	312
BstFNI	CGCG	2 cut(s)	382, 408
BstKTI	GATC	3 cut(s)	339, 509, 769
BstMAI	GTCTC	2 cut(s)	175, 189
BstMBI	GATC	3 cut(s)	336, 506, 766
BstNSI	RCATGY	3 cut(s)	467, 488, 677
BstUI	CGCG	2 cut(s)	382, 408
BstV1I	GCAGC	6 cut(s)	59, 83, 98, 258, 371, 698
BstV2I	GAAGAC	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	32, 149
BtgI	CCRYGG	2 cut(s)	387, 406
BtsCI	GGATG	1 cut(s)	312
BtsI	GCAGTG	3 cut(s)	181, 423, 523
BtsIMutI	CAGTG	5 cut(s)	39, 181, 423, 523, 765
BveI	ACCTGC	1 cut(s)	428
Cac8I	GCNNGC	5 cut(s)	274, 375, 384, 430, 514
Cfr13I	GGNCC	2 cut(s)	31, 284
Cfr42I	CCGCGG	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	4 cut(s)	388, 464, 485, 674
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	3 cut(s)	6, 736, 757
DpnI	GATC	3 cut(s)	338, 508, 768
DpnII	GATC	3 cut(s)	336, 506, 766
EciI	GGCGGA	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	11, 387
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	687
EcoT14I	CCWWGG	2 cut(s)	11, 387
ErhI	CCWWGG	2 cut(s)	11, 387
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	4 cut(s)	391, 467, 488, 677
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	4 cut(s)	387, 463, 484, 673
FbaI	TGATCA	2 cut(s)	336, 766
Fnu4HI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
FspBI	CTAG	3 cut(s)	51, 396, 669
GluI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
HaeIII	GGCC	2 cut(s)	32, 149
Hin1II	CATG	4 cut(s)	391, 467, 488, 677
HinfI	GANTC	3 cut(s)	168, 538, 710
HphI	GGTGA	3 cut(s)	74, 514, 771
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	163, 706
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	643, 658
HpyCH4III	ACNGT	3 cut(s)	220, 658, 773
HpyCH4IV	ACGT	2 cut(s)	189, 720
HpyF3I	CTNAG	3 cut(s)	6, 736, 757
HpySE526I	ACGT	2 cut(s)	189, 720
Hsp92II	CATG	4 cut(s)	391, 467, 488, 677
Ksp22I	TGATCA	2 cut(s)	336, 766
KspI	CCGCGG	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	336, 506, 766
LmnI	GCTCC	3 cut(s)	95, 463, 604
LpnPI	CCDG	4 cut(s)	27, 258, 279, 423
Lsp1109I	GCAGC	6 cut(s)	59, 83, 98, 258, 371, 698
MaeI	CTAG	3 cut(s)	51, 396, 669
MaeII	ACGT	2 cut(s)	189, 720
MaeIII	GTNAC	2 cut(s)	224, 716
MalI	GATC	3 cut(s)	338, 508, 768
MboI	GATC	3 cut(s)	336, 506, 766
MboII	GAAGA	1 cut(s)	128
MluCI	AATT	2 cut(s)	128, 547
MluI	ACGCGT	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	491
MspA1I	CMGCKG	2 cut(s)	408, 630
MvnI	CGCG	2 cut(s)	382, 408
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	3 cut(s)	336, 506, 766
NlaIII	CATG	4 cut(s)	391, 467, 488, 677
NlaIV	GGNNCC	2 cut(s)	285, 606
NspI	RCATGY	3 cut(s)	467, 488, 677
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	538, 710
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	6 cut(s)	49, 73, 88, 248, 361, 688
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	285, 606
PspPI	GGNCC	2 cut(s)	31, 284
PvuII	CAGCTG	1 cut(s)	630
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SacII	CCGCGG	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
Sau3AI	GATC	3 cut(s)	336, 506, 766
Sau96I	GGNCC	2 cut(s)	31, 284
SchI	GAGTC	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	409
SgrBI	CCGCGG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	128, 547
SsiI	CCGC	4 cut(s)	351, 406, 408, 726
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	3 cut(s)	51, 396, 669
StyI	CCWWGG	2 cut(s)	11, 387
TaaI	ACNGT	3 cut(s)	220, 658, 773
TaiI	ACGT	2 cut(s)	192, 723
TaqI	TCGA	4 cut(s)	309, 324, 541, 618
TasI	AATT	2 cut(s)	128, 547
TfiI	GAWTC	2 cut(s)	538, 710
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	5 cut(s)	46, 188, 430, 523, 765
TseI	GCWGC	6 cut(s)	47, 71, 86, 246, 359, 686
TspDTI	ATGAA	1 cut(s)	723
TspRI	CASTG	5 cut(s)	46, 188, 430, 523, 765
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	3 cut(s)	467, 488, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	3 cut(s)	51, 396, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.