Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

37597935 .. 37599190

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1293400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCTAAGCCAAGGTTGGAGGGCAAGGTGGCCCTGATAACTGGTGGGGCAAGGGGGATTGGTGAGGAAGCAGTGAGACTATTTGCAGCAAATGGAGCCTTTGTTGTTATTGCAGATATCCTAGACGAATTAGGTCATCAAGTTGTTGCCTCAATCGGTTCAGACAGAGTTAGCTATTGTCATTGCGACGTCAGAGATGAAAACCAAGTTGAAAATACTGTGAACTTCACGTTGGAAAACTACGGCAGCCTCGATATTTTGTTCAGCAATGCAGGTGTCATGGGTTCAATGACTGGCATTTTAGACCTTGACATTCAAGGCTTTGACAACACAATGGCCATAAACGTTCGCGGTGTTGCTGCAACGTTCAAGCACGCGGCGCGAGCCATGGTGGCACGTGCCGTGCGTGGTTCAATCATATGTACCACAAGCATTGCAGCATCTCTCGGAGGCACAGCTCCGCAGGCTTACACCACTTCGAAACATGCTCTATTGGGTTTGGTCAGAGCAGCTTGCAGTGAGCTCGGAGCTCACGGGATTCGAGTTAACAGCATTTCTCCGTTTGGTGTCGCAACCTTGTTTTCATGCAAAGCGTACAATGTGGACCCAGATGTGGCTGAGGCCAGTATCTCCGCCAAGGGAAATTTGAAGGGCGTTGTGTTGAAGGCTAGGCATGTGGCGGAGGCGGCTCTGTTTCTTGCCACCGATGAATCAGGCTATGTCAGTGGACACAACTTGGTTGTCGATGGCGGATTCACGGTGGTTAATCACAGTTTCTCAGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

263

Amino Acids

27.24

Weight (kDa)

6.23

Isoelectric Point (pI)

16.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 193	1e-45	short chain dehydrogenase
KR	PF08659	11 - 172	1.6e-06	KR domain
adh_short_C2	PF13561	16 - 253	8.3e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	263
AccII	CGCG	3 cut(s)	351, 377, 382
AciI	CCGC	7 cut(s)	351, 377, 461, 633, 680, 686, 750
AclI	AACGTT	2 cut(s)	345, 365
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	643
AcvI	CACGTG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	424, 596
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	7 cut(s)	212, 288, 317, 370, 414, 649, 664
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	5 cut(s)	174, 458, 512, 523, 530
AluI	AGCT	5 cut(s)	174, 458, 512, 523, 530
Alw21I	GWGCWC	2 cut(s)	525, 532
Alw26I	GTCTC	1 cut(s)	70
AoxI	GGCC	3 cut(s)	30, 336, 621
ApeKI	GCWGC	5 cut(s)	86, 246, 359, 437, 509
ApoI	RAATTY	1 cut(s)	643
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	31, 604
AsuHPI	GGTGA	1 cut(s)	74
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	604
BalI	TGGCCA	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	525, 532
BbrPI	CACGTG	1 cut(s)	398
Bbv12I	GWGCWC	2 cut(s)	525, 532
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	5 cut(s)	98, 258, 346, 449, 521
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	2 cut(s)	259, 386
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	122, 669
BfuAI	ACCTGC	1 cut(s)	263
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	7 cut(s)	87, 247, 360, 378, 438, 510, 687
BlsI	GCNGC	7 cut(s)	88, 248, 361, 379, 439, 511, 688
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	2 cut(s)	31, 604
BmiI	GGNNCC	2 cut(s)	97, 606
BmsI	GCATC	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	11, 387, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse1I	ACTGG	3 cut(s)	46, 298, 624
Bse3DI	GCAATG	3 cut(s)	181, 274, 432
BseDI	CCNNGG	3 cut(s)	11, 387, 636
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMI	GCAATG	3 cut(s)	181, 274, 432
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	3 cut(s)	46, 298, 624
BseXI	GCAGC	5 cut(s)	98, 258, 346, 449, 521
Bsh1236I	CGCG	3 cut(s)	351, 377, 382
BshFI	GGCC	3 cut(s)	32, 338, 623
BsiHKAI	GWGCWC	2 cut(s)	525, 532
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	32, 338, 623
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	525, 532
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	7 cut(s)	351, 377, 461, 633, 680, 686, 750
BspANI	GGCC	3 cut(s)	32, 338, 623
BspCNI	CTCAG	1 cut(s)	610
BspFNI	CGCG	3 cut(s)	351, 377, 382
BspLI	GGNNCC	2 cut(s)	97, 606
BspMI	ACCTGC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	479
BsrDI	GCAATG	3 cut(s)	181, 274, 432
BsrI	ACTGG	3 cut(s)	46, 298, 624
BssECI	CCNNGG	3 cut(s)	11, 387, 636
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	3 cut(s)	11, 387, 636
Bst4CI	ACNGT	3 cut(s)	220, 760, 773
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	4 cut(s)	375, 384, 465, 514
BstDEI	CTNAG	3 cut(s)	6, 618, 778
BstDSI	CCRYGG	1 cut(s)	387
BstFNI	CGCG	3 cut(s)	351, 377, 382
BstHHI	GCGC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 379, 383, 392, 464, 686
BstNSI	RCATGY	2 cut(s)	488, 677
BstUI	CGCG	3 cut(s)	351, 377, 382
BstV1I	GCAGC	5 cut(s)	98, 258, 346, 449, 521
BsuRI	GGCC	3 cut(s)	32, 338, 623
BtgI	CCRYGG	1 cut(s)	387
BtsI	GCAGTG	2 cut(s)	78, 523
BtsIMutI	CAGTG	3 cut(s)	78, 523, 730
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	4 cut(s)	375, 384, 465, 514
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	31, 604
Csp6I	GTAC	2 cut(s)	423, 595
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	5 cut(s)	280, 388, 485, 585, 674
CviQI	GTAC	2 cut(s)	423, 595
DdeI	CTNAG	3 cut(s)	6, 618, 778
EaeI	YGGCCR	1 cut(s)	336
EciI	GGCGGA	3 cut(s)	622, 695, 765
Ecl136II	GAGCTC	2 cut(s)	523, 530
Eco130I	CCWWGG	3 cut(s)	11, 387, 636
Eco24I	GRGCYC	2 cut(s)	525, 532
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	604
Eco53kI	GAGCTC	2 cut(s)	523, 530
Eco72I	CACGTG	1 cut(s)	398
EcoICRI	GAGCTC	2 cut(s)	523, 530
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	3 cut(s)	11, 387, 636
EcoT38I	GRGCYC	2 cut(s)	525, 532
ErhI	CCWWGG	3 cut(s)	11, 387, 636
FaeI	CATG	5 cut(s)	283, 391, 488, 588, 677
FaiI	YATR	9 cut(s)	281, 341, 389, 419, 421, 486, 586, 675, 720
FatI	CATG	5 cut(s)	279, 387, 484, 584, 673
FauNDI	CATATG	1 cut(s)	419
Fnu4HI	GCNGC	7 cut(s)	87, 247, 360, 378, 438, 510, 687
FriOI	GRGCYC	2 cut(s)	525, 532
Fsp4HI	GCNGC	7 cut(s)	87, 247, 360, 378, 438, 510, 687
FspBI	CTAG	2 cut(s)	122, 669
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	7 cut(s)	87, 247, 360, 378, 438, 510, 687
HaeIII	GGCC	3 cut(s)	32, 338, 623
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	5 cut(s)	283, 391, 488, 588, 677
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	3 cut(s)	538, 710, 753
HpaI	GTTAAC	1 cut(s)	547
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	4 cut(s)	223, 547, 604, 728
Hpy188I	TCNGA	5 cut(s)	163, 194, 449, 506, 527
Hpy8I	GTNNAC	4 cut(s)	223, 547, 604, 728
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	643, 658
HpyCH4III	ACNGT	3 cut(s)	220, 760, 773
HpyCH4IV	ACGT	5 cut(s)	189, 230, 345, 365, 397
HpyCH4V	TGCA	7 cut(s)	86, 113, 272, 362, 437, 516, 588
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 379, 383, 392, 464, 686
HpyF3I	CTNAG	3 cut(s)	6, 618, 778
HpySE526I	ACGT	5 cut(s)	189, 230, 345, 365, 397
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	5 cut(s)	283, 391, 488, 588, 677
HspAI	GCGC	1 cut(s)	380
KspAI	GTTAAC	1 cut(s)	547
LmnI	GCTCC	3 cut(s)	95, 463, 527
LpnPI	CCDG	8 cut(s)	27, 47, 258, 279, 449, 621, 637, 699
Lsp1109I	GCAGC	5 cut(s)	98, 258, 346, 449, 521
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	2 cut(s)	122, 669
MaeII	ACGT	5 cut(s)	189, 230, 345, 365, 397
MhlI	GDGCHC	2 cut(s)	525, 532
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	2 cut(s)	128, 643
MluNI	TGGCCA	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	7 cut(s)	13, 58, 160, 260, 443, 613, 676
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	546, 765
Msp20I	TGGCCA	1 cut(s)	338
MvnI	CGCG	3 cut(s)	351, 377, 382
MwoI	GCNNNNNNNGC	6 cut(s)	95, 379, 383, 392, 464, 686
NcoI	CCATGG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	419
NlaIII	CATG	5 cut(s)	283, 391, 488, 588, 677
NlaIV	GGNNCC	2 cut(s)	97, 606
NspI	RCATGY	2 cut(s)	488, 677
NspV	TTCGAA	1 cut(s)	479
PaqCI	CACCTGC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 403
PfeI	GAWTC	3 cut(s)	538, 710, 753
PkrI	GCNGC	7 cut(s)	88, 248, 361, 379, 439, 511, 688
PmaCI	CACGTG	1 cut(s)	398
PmlI	CACGTG	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	398
Psp124BI	GAGCTC	2 cut(s)	525, 532
Psp1406I	AACGTT	2 cut(s)	345, 365
PspCI	CACGTG	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	97, 606
PspPI	GGNCC	2 cut(s)	31, 604
RsaI	GTAC	2 cut(s)	424, 596
RsaNI	GTAC	2 cut(s)	423, 595
SacI	GAGCTC	2 cut(s)	525, 532
SaqAI	TTAA	2 cut(s)	546, 765
SatI	GCNGC	7 cut(s)	87, 247, 360, 378, 438, 510, 687
Sau96I	GGNCC	2 cut(s)	31, 604
SduI	GDGCHC	2 cut(s)	525, 532
SfaNI	GCATC	1 cut(s)	449
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	1 cut(s)	604
Sse9I	AATT	2 cut(s)	128, 643
SsiI	CCGC	7 cut(s)	351, 377, 461, 633, 680, 686, 750
SspMI	CTAG	2 cut(s)	122, 669
SstI	GAGCTC	2 cut(s)	525, 532
StyI	CCWWGG	3 cut(s)	11, 387, 636
TaaI	ACNGT	3 cut(s)	220, 760, 773
TaiI	ACGT	5 cut(s)	192, 233, 348, 368, 400
TaqI	TCGA	4 cut(s)	252, 479, 541, 744
TasI	AATT	2 cut(s)	128, 643
TauI	GCSGC	2 cut(s)	380, 689
TfiI	GAWTC	3 cut(s)	538, 710, 753
Tru1I	TTAA	2 cut(s)	546, 765
Tru9I	TTAA	2 cut(s)	546, 765
TscAI	CASTG	3 cut(s)	78, 523, 730
TseI	GCWGC	5 cut(s)	86, 246, 359, 437, 509
TspDTI	ATGAA	3 cut(s)	213, 573, 723
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	3 cut(s)	78, 523, 730
VpaK11BI	GGWCC	1 cut(s)	604
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	2 cut(s)	488, 677
XspI	CTAG	2 cut(s)	122, 669
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.