Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

16374002 .. 16376374

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0192300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGTTCCTGCAACATATCCACACTGACGGCCATGGTGGTTCTGGTGGCCTTGTTGGGCTCGCCAACCAAGGCACAGGAGTCGACCTGCGCTAATGACCTGGTGCCATGTGCAGGGTACCTCAACAACACGGACCAACCATCCACCACCTGCTGCACCGCCATCAAACAGACCGTGGCTACCCAGCTCCGCTGCCTGTGCAATCTCTATTTTACCCCCGGACTTCTCCAGTCCCTGGGCGCTAACACCACCTCGGCTCTCAGAATTGCCAACGCTTGCGGCGCCGACGCTGTCGGTGTTGATCAGTGCAAAGCTATCCTGAGTCCAGCACCAACTGGTTCTCCACCTTCAGCTGTACCGGGAGGTGATGGTAGCAGTGGTTCGGGCAGGATTGCGTGGACCGGACTCCCTGCTCTGCTCTTATTCTGGGCTTCCGTCATGTATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

149

Amino Acids

15.14

Weight (kDa)

5.97

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	12 - 103	6.9e-14	Probable lipid transfer
Tryp_alpha_amyl	PF00234	32 - 97	5.1e-06	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	2 cut(s)	95, 158
Acc65I	GGTACC	1 cut(s)	117
AccB1I	GGYRCC	3 cut(s)	103, 117, 281
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	3 cut(s)	159, 190, 279
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	2 cut(s)	119, 357
AfiI	CCNNNNNNNGG	2 cut(s)	113, 235
AjnI	CCWGG	2 cut(s)	99, 234
AluBI	AGCT	3 cut(s)	187, 314, 353
AluI	AGCT	3 cut(s)	187, 314, 353
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	2 cut(s)	30, 48
ApeKI	GCWGC	2 cut(s)	153, 192
Asp718I	GGTACC	1 cut(s)	117
AspLEI	GCGC	3 cut(s)	92, 242, 284
AspS9I	GGNCC	2 cut(s)	133, 399
AsuC2I	CCSGG	2 cut(s)	219, 360
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	133, 399
BanI	GGYRCC	3 cut(s)	103, 117, 281
BanII	GRGCYC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	140, 179
BccI	CCATC	3 cut(s)	148, 170, 362
BceAI	ACGGC	1 cut(s)	45
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciT130I	CCWGG	2 cut(s)	101, 236
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	219, 360
BfoI	RGCGCY	2 cut(s)	243, 285
BfuAI	ACCTGC	2 cut(s)	95, 158
BisI	GCNGC	3 cut(s)	154, 193, 280
BlsI	GCNGC	3 cut(s)	155, 194, 281
Bme1390I	CCNGG	4 cut(s)	101, 219, 236, 360
Bme18I	GGWCC	2 cut(s)	133, 399
BmgT120I	GGNCC	2 cut(s)	133, 399
BmiI	GGNNCC	4 cut(s)	7, 105, 119, 283
BmrFI	CCNGG	4 cut(s)	101, 219, 236, 360
BpmI	CTGGAG	1 cut(s)	212
BpuMI	CCSGG	2 cut(s)	219, 360
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	7 cut(s)	33, 69, 174, 217, 234, 235, 252
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 235
Bse1I	ACTGG	2 cut(s)	229, 340
BseBI	CCWGG	2 cut(s)	101, 236
BseDI	CCNNGG	7 cut(s)	33, 69, 174, 217, 234, 235, 252
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	113, 235
BseMII	CTCAG	2 cut(s)	274, 311
BseNI	ACTGG	2 cut(s)	229, 340
BseXI	GCAGC	2 cut(s)	140, 179
BseYI	CCCAGC	1 cut(s)	183
BsgI	GTGCAG	2 cut(s)	132, 139
BshFI	GGCC	2 cut(s)	32, 50
BshNI	GGYRCC	3 cut(s)	103, 117, 281
BsiSI	CCGG	3 cut(s)	219, 359, 402
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	113, 235
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	32, 50
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	301
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	3 cut(s)	159, 190, 279
BspANI	GGCC	2 cut(s)	32, 50
BspCNI	CTCAG	2 cut(s)	273, 312
BspLI	GGNNCC	4 cut(s)	7, 105, 119, 283
BspMI	ACCTGC	2 cut(s)	95, 158
BspT107I	GGYRCC	3 cut(s)	103, 117, 281
BsrI	ACTGG	2 cut(s)	229, 340
BssECI	CCNNGG	7 cut(s)	33, 69, 174, 217, 234, 235, 252
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	33, 69
Bst2UI	CCWGG	2 cut(s)	101, 236
Bst4CI	ACNGT	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	62, 277
BstDEI	CTNAG	2 cut(s)	260, 320
BstDSI	CCRYGG	2 cut(s)	33, 174
BstF5I	GGATG	1 cut(s)	140
BstH2I	RGCGCY	2 cut(s)	243, 285
BstHHI	GCGC	3 cut(s)	92, 242, 284
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 281
BstNI	CCWGG	2 cut(s)	101, 236
BstSCI	CCNGG	4 cut(s)	99, 217, 234, 358
BstV1I	GCAGC	2 cut(s)	140, 179
BsuRI	GGCC	2 cut(s)	32, 50
BtgI	CCRYGG	2 cut(s)	33, 174
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	3 cut(s)	23, 311, 382
BveI	ACCTGC	2 cut(s)	95, 158
Cac8I	GCNNGC	2 cut(s)	62, 277
CaiI	CAGNNNCTG	1 cut(s)	235
CfoI	GCGC	3 cut(s)	92, 242, 284
Cfr13I	GGNCC	2 cut(s)	133, 399
CseI	GACGC	1 cut(s)	296
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	118, 356
CviAII	CATG	3 cut(s)	34, 108, 439
CviJI	RGCY	9 cut(s)	32, 50, 60, 179, 187, 257, 314, 353, 431
CviKI_1	RGCY	9 cut(s)	32, 50, 60, 179, 187, 257, 314, 353, 431
CviQI	GTAC	2 cut(s)	118, 356
DdeI	CTNAG	2 cut(s)	260, 320
DinI	GGCGCC	1 cut(s)	283
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	33, 69
Eco24I	GRGCYC	1 cut(s)	62
Eco47I	GGWCC	2 cut(s)	133, 399
Eco57I	CTGAAG	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	99, 234
EcoT14I	CCWWGG	2 cut(s)	33, 69
EcoT38I	GRGCYC	1 cut(s)	62
EgeI	GGCGCC	1 cut(s)	283
EheI	GGCGCC	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	33, 69
FaeI	CATG	3 cut(s)	37, 111, 442
FaiI	YATR	4 cut(s)	17, 35, 109, 440
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	3 cut(s)	33, 107, 438
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	3 cut(s)	154, 193, 280
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	154, 193, 280
GlaI	GCGC	3 cut(s)	91, 241, 283
GluI	GCNGC	3 cut(s)	154, 193, 280
GsaI	CCCAGC	1 cut(s)	187
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	2 cut(s)	243, 285
HaeIII	GGCC	2 cut(s)	32, 50
HapII	CCGG	3 cut(s)	219, 359, 402
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	3 cut(s)	92, 242, 284
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	37, 111, 442
Hin6I	GCGC	3 cut(s)	90, 240, 282
HinP1I	GCGC	3 cut(s)	90, 240, 282
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	3 cut(s)	80, 322, 405
HpaII	CCGG	3 cut(s)	219, 359, 402
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	84, 399
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	2 cut(s)	84, 399
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	5 cut(s)	12, 113, 156, 201, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 281
HpyF3I	CTNAG	2 cut(s)	260, 320
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	3 cut(s)	37, 111, 442
HspAI	GCGC	3 cut(s)	90, 240, 282
KasI	GGCGCC	1 cut(s)	281
KpnI	GGTACC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	2 cut(s)	140, 179
MabI	ACCWGGT	1 cut(s)	99
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	1 cut(s)	264
Mly113I	GGCGCC	1 cut(s)	282
MlyI	GAGTC	3 cut(s)	89, 331, 399
MnlI	CCTC	3 cut(s)	131, 262, 356
MspA1I	CMGCKG	2 cut(s)	192, 353
MspI	CCGG	3 cut(s)	219, 359, 402
MspR9I	CCNGG	4 cut(s)	101, 219, 236, 360
MvaI	CCWGG	2 cut(s)	101, 236
MwoI	GCNNNNNNNGC	2 cut(s)	198, 281
NarI	GGCGCC	1 cut(s)	282
NciI	CCSGG	2 cut(s)	219, 360
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	37, 111, 442
NlaIV	GGNNCC	4 cut(s)	7, 105, 119, 283
NmeAIII	GCCGAG	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	158
PasI	CCCWGGG	1 cut(s)	235
PflFI	GACNNNGTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	155, 194, 281
PleI	GAGTC	3 cut(s)	88, 330, 399
PluTI	GGCGCC	1 cut(s)	285
PpsI	GAGTC	3 cut(s)	88, 330, 399
Psp6I	CCWGG	2 cut(s)	99, 234
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	2 cut(s)	99, 234
PspN4I	GGNNCC	4 cut(s)	7, 105, 119, 283
PspPI	GGNCC	2 cut(s)	133, 399
PsrI	GAACNNNNNNTAC	2 cut(s)	364, 396
PstNI	CAGNNNCTG	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	119, 357
RsaNI	GTAC	2 cut(s)	118, 356
SalI	GTCGAC	1 cut(s)	82
SatI	GCNGC	3 cut(s)	154, 193, 280
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	2 cut(s)	133, 399
SchI	GAGTC	3 cut(s)	89, 331, 399
ScrFI	CCNGG	4 cut(s)	101, 219, 236, 360
SduI	GDGCHC	1 cut(s)	62
SexAI	ACCWGGT	1 cut(s)	99
SfoI	GGCGCC	1 cut(s)	283
SinI	GGWCC	2 cut(s)	133, 399
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	3 cut(s)	159, 190, 279
SspDI	GGCGCC	1 cut(s)	281
StyD4I	CCNGG	4 cut(s)	99, 217, 234, 358
StyI	CCWWGG	2 cut(s)	33, 69
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	83
TasI	AATT	1 cut(s)	264
TauI	GCSGC	1 cut(s)	282
TscAI	CASTG	3 cut(s)	30, 311, 382
TseI	GCWGC	2 cut(s)	153, 192
TspGWI	ACGGA	2 cut(s)	146, 424
TspRI	CASTG	3 cut(s)	30, 311, 382
Tth111I	GACNNNGTC	1 cut(s)	290
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	133, 399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.