Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

11193389 .. 11195171

Gene Structure 1783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCCAAAACTCTTGGTTATATTTAACATTATATATCCTTTGCAATCCCTCAAGAAGGATACATTCAATTTTTGGTGGTCTTTTCAAAAGTGGAAATACAACAAAACAATGTCGGGACTTAGGCAAGTATTGGATGGCAAGATCGCAATTATAACAGGCGGAGCTAGTGGGATTGGAGCTGAAGCGGTTAGGTTGTTCACGGACCATGGAGCTAAAGTGGTCATCGTGGACATACAAGAAGAGCTTGGCCAAAACCTCGCCGTTTCGATAGGGCTAGACAAAGCAAGTTTTTACCGTTGTAATGTAACCGACGAGACGGATGTCGAGAACGCCGTTAAGTTCACCGTTGAAAAACACGGAAAGCTTGACGTTCTGTTTAGTAACGCCGGGGTCTTGGAAGCGTTTGGAAGCGTTCTTGATTTGGATCTTGAGGCGTTTGATCGAACGATGGCGGTTAACGTTCGCGGTGCGGCTGCGTTTATCAAACACGCGGCACGTTCGATGGTGGCTAGTGGTACTCGTGGCTCCATTGTATGTACGACGAGTATTGCGGCAGAGATAGGTGGTCCGGGACCTCATAGTTACACGGCTTCTAAGCACGCGCTTCTCGGGCTGATCCGATCAGCGTGTGCTGGACTGGGGCAGTACGGTATTAGAGTCAACGGTGTTGCACCGTATGGGGTTGCCACGGGGATGACTAGCGCCTACAATGAGGAAGCGGTGAAGATGCTTGAAGAATATGGTGAAGCCCTAGGGAATCTCAAAGGTGTGGTGCTTAAAGCTCGCCACATCGCAGAAGCAGCTTTGTTTTTGGCTTCTGATGATTCGGTTTATATTAGCGGTCAGAATCTGGTGGTTGATGGTGGTTTTAGCGTCGTTAAGCTCATGACCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0046872 GO:0046914 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

298

Amino Acids

31.8

Weight (kDa)

6.6

Isoelectric Point (pI)

22.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	45 - 237	3.8e-49	short chain dehydrogenase
KR	PF08659	48 - 206	5.3e-10	KR domain
adh_short_C2	PF13561	53 - 289	1.5e-61	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccII	CGCG	3 cut(s)	465, 491, 602
AciI	CCGC	9 cut(s)	159, 185, 452, 465, 470, 491, 551, 719, 840
AclI	AACGTT	1 cut(s)	459
AclWI	GGATC	2 cut(s)	432, 610
AcoI	YGGCCR	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	201
AcvI	CACGTG	1 cut(s)	894
AfaI	GTAC	3 cut(s)	517, 538, 647
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	4 cut(s)	67, 86, 350, 734
AluBI	AGCT	8 cut(s)	164, 179, 212, 244, 364, 782, 803, 883
AluI	AGCT	8 cut(s)	164, 179, 212, 244, 364, 782, 803, 883
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	432, 610
AlwNI	CAGNNNCTG	1 cut(s)	850
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	473, 800
AspA2I	CCTAGG	1 cut(s)	751
AspLEI	GCGC	2 cut(s)	604, 704
AspS9I	GGNCC	3 cut(s)	202, 566, 572
AsuC2I	CCSGG	2 cut(s)	388, 570
AsuHPI	GGTGA	3 cut(s)	334, 733, 755
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	3 cut(s)	202, 566, 572
AvrII	CCTAGG	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	249
BauI	CACGAG	1 cut(s)	519
BbrPI	CACGTG	1 cut(s)	894
BbvI	GCAGC	2 cut(s)	460, 812
BccI	CCATC	4 cut(s)	128, 442, 496, 854
BceAI	ACGGC	3 cut(s)	245, 317, 603
BciVI	GTATCC	1 cut(s)	52
BcnI	CCSGG	2 cut(s)	388, 570
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	5 cut(s)	165, 275, 510, 699, 752
BfoI	RGCGCY	1 cut(s)	705
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	5 cut(s)	471, 474, 492, 552, 801
BlnI	CCTAGG	1 cut(s)	751
BlsI	GCNGC	5 cut(s)	472, 475, 493, 553, 802
Bme1390I	CCNGG	2 cut(s)	388, 570
Bme18I	GGWCC	3 cut(s)	202, 566, 572
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	3 cut(s)	202, 566, 572
BmiI	GGNNCC	2 cut(s)	526, 573
BmrFI	CCNGG	2 cut(s)	388, 570
BmrI	ACTGGG	1 cut(s)	647
BmsI	GCATC	1 cut(s)	717
BmuI	ACTGGG	1 cut(s)	647
BoxI	GACNNNNGTC	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	35, 449
BpuMI	CCSGG	2 cut(s)	388, 570
BsaAI	YACGTR	1 cut(s)	894
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	4 cut(s)	205, 387, 687, 751
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	4 cut(s)	205, 387, 687, 751
BseGI	GGATG	3 cut(s)	139, 325, 699
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	642
BseXI	GCAGC	2 cut(s)	460, 812
Bsh1236I	CGCG	3 cut(s)	465, 491, 602
BshFI	GGCC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	2 cut(s)	387, 569
BslFI	GGGAC	2 cut(s)	129, 585
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	308
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	2 cut(s)	129, 585
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	608
Bsp143I	GATC	5 cut(s)	141, 424, 439, 615, 620
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	9 cut(s)	159, 185, 452, 465, 470, 491, 551, 719, 840
BspANI	GGCC	1 cut(s)	249
BspFNI	CGCG	3 cut(s)	465, 491, 602
BspHI	TCATGA	1 cut(s)	885
BspLI	GGNNCC	2 cut(s)	526, 573
BspPI	GGATC	2 cut(s)	432, 610
BspQI	GCTCTTC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	4 cut(s)	205, 387, 687, 751
BssMI	GATC	5 cut(s)	141, 424, 439, 615, 620
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	2 cut(s)	205, 751
Bst2BI	CACGAG	1 cut(s)	519
Bst4CI	ACNGT	5 cut(s)	296, 346, 650, 665, 675
Bst6I	CTCTTC	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	894
BstC8I	GCNNGC	2 cut(s)	600, 784
BstDEI	CTNAG	2 cut(s)	119, 594
BstDSI	CCRYGG	2 cut(s)	205, 687
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	139, 325, 699
BstFNI	CGCG	3 cut(s)	465, 491, 602
BstH2I	RGCGCY	1 cut(s)	705
BstHHI	GCGC	2 cut(s)	604, 704
BstKTI	GATC	5 cut(s)	144, 427, 442, 618, 623
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	5 cut(s)	141, 424, 439, 615, 620
BstMWI	GCNNNNNNNGC	2 cut(s)	610, 800
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	2 cut(s)	386, 568
BstUI	CGCG	3 cut(s)	465, 491, 602
BstV1I	GCAGC	2 cut(s)	460, 812
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	249
BtgI	CCRYGG	2 cut(s)	205, 687
BtgZI	GCGATG	1 cut(s)	775
BtsCI	GGATG	3 cut(s)	139, 325, 699
Cac8I	GCNNGC	2 cut(s)	600, 784
CaiI	CAGNNNCTG	1 cut(s)	850
CciI	TCATGA	1 cut(s)	885
CfoI	GCGC	2 cut(s)	604, 704
Cfr13I	GGNCC	3 cut(s)	202, 566, 572
CseI	GACGC	1 cut(s)	862
Csp6I	GTAC	3 cut(s)	516, 537, 646
CviAII	CATG	2 cut(s)	206, 886
CviQI	GTAC	3 cut(s)	516, 537, 646
DdeI	CTNAG	2 cut(s)	119, 594
DpnI	GATC	5 cut(s)	143, 426, 441, 617, 622
DpnII	GATC	5 cut(s)	141, 424, 439, 615, 620
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	205, 751
Eco47I	GGWCC	3 cut(s)	202, 566, 572
Eco57I	CTGAAG	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	894
Eco88I	CYCGRG	1 cut(s)	608
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	572
EcoT14I	CCWWGG	2 cut(s)	205, 751
ErhI	CCWWGG	2 cut(s)	205, 751
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	2 cut(s)	209, 889
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	2 cut(s)	129, 585
FatI	CATG	2 cut(s)	205, 885
Fnu4HI	GCNGC	5 cut(s)	471, 474, 492, 552, 801
FokI	GGATG	3 cut(s)	146, 332, 706
Fsp4HI	GCNGC	5 cut(s)	471, 474, 492, 552, 801
FspBI	CTAG	5 cut(s)	165, 275, 510, 699, 752
GlaI	GCGC	2 cut(s)	603, 703
GluI	GCNGC	5 cut(s)	471, 474, 492, 552, 801
HaeII	RGCGCY	1 cut(s)	705
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	2 cut(s)	387, 569
HgaI	GACGC	1 cut(s)	862
HhaI	GCGC	2 cut(s)	604, 704
Hin1II	CATG	2 cut(s)	209, 889
Hin6I	GCGC	2 cut(s)	602, 702
HinP1I	GCGC	2 cut(s)	602, 702
HincII	GTYRAC	2 cut(s)	457, 661
HindII	GTYRAC	2 cut(s)	457, 661
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	657, 757, 824, 847
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	387, 569
HphI	GGTGA	3 cut(s)	334, 733, 755
Hpy166II	GTNNAC	5 cut(s)	198, 229, 342, 457, 661
Hpy188I	TCNGA	3 cut(s)	620, 820, 846
Hpy188III	TCNNGA	6 cut(s)	52, 114, 325, 416, 428, 886
Hpy8I	GTNNAC	5 cut(s)	198, 229, 342, 457, 661
Hpy99I	CGWCG	3 cut(s)	314, 544, 878
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	5 cut(s)	296, 346, 650, 665, 675
HpyCH4IV	ACGT	4 cut(s)	369, 459, 496, 893
HpyCH4V	TGCA	2 cut(s)	43, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	610, 800
HpyF3I	CTNAG	2 cut(s)	119, 594
HpySE526I	ACGT	4 cut(s)	369, 459, 496, 893
Hsp92II	CATG	2 cut(s)	209, 889
HspAI	GCGC	2 cut(s)	602, 702
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	5 cut(s)	141, 424, 439, 615, 620
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	4 cut(s)	161, 176, 209, 530
LpnPI	CCDG	6 cut(s)	141, 400, 582, 618, 623, 836
Lsp1109I	GCAGC	2 cut(s)	460, 812
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	5 cut(s)	165, 275, 510, 699, 752
MaeII	ACGT	4 cut(s)	369, 459, 496, 893
MaeIII	GTNAC	3 cut(s)	304, 380, 581
MalI	GATC	5 cut(s)	143, 426, 441, 617, 622
MboI	GATC	5 cut(s)	141, 424, 439, 615, 620
MboII	GAAGA	3 cut(s)	251, 736, 746
MflI	RGATCY	1 cut(s)	424
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	2 cut(s)	67, 147
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	666
MnlI	CCTC	5 cut(s)	59, 266, 424, 585, 706
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	5 cut(s)	24, 336, 456, 777, 879
MslI	CAYNNNNRTG	1 cut(s)	692
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	2 cut(s)	387, 569
MspR9I	CCNGG	2 cut(s)	388, 570
MvnI	CGCG	3 cut(s)	465, 491, 602
MwoI	GCNNNNNNNGC	2 cut(s)	610, 800
NciI	CCSGG	2 cut(s)	388, 570
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	5 cut(s)	141, 424, 439, 615, 620
NlaIII	CATG	2 cut(s)	209, 889
NlaIV	GGNNCC	2 cut(s)	526, 573
PagI	TCATGA	1 cut(s)	885
PciSI	GCTCTTC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	757, 824, 847
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	5 cut(s)	472, 475, 493, 553, 802
PleI	GAGTC	1 cut(s)	665
PmaCI	CACGTG	1 cut(s)	894
PmlI	CACGTG	1 cut(s)	894
PpsI	GAGTC	1 cut(s)	665
Ppu21I	YACGTR	1 cut(s)	894
PpuMI	RGGWCCY	1 cut(s)	572
PshAI	GACNNNNGTC	1 cut(s)	320
PsiI	TTATAA	1 cut(s)	152
Psp1406I	AACGTT	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	572
PspCI	CACGTG	1 cut(s)	894
PspN4I	GGNNCC	2 cut(s)	526, 573
PspPI	GGNCC	3 cut(s)	202, 566, 572
PspPPI	RGGWCCY	1 cut(s)	572
PstNI	CAGNNNCTG	1 cut(s)	850
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	3 cut(s)	517, 538, 647
RsaNI	GTAC	3 cut(s)	516, 537, 646
RseI	CAYNNNNRTG	1 cut(s)	692
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	5 cut(s)	24, 336, 456, 777, 879
SatI	GCNGC	5 cut(s)	471, 474, 492, 552, 801
Sau3AI	GATC	5 cut(s)	141, 424, 439, 615, 620
Sau96I	GGNCC	3 cut(s)	202, 566, 572
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	2 cut(s)	388, 570
SfaNI	GCATC	1 cut(s)	717
SinI	GGWCC	3 cut(s)	202, 566, 572
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	2 cut(s)	50, 428
SmoI	CTYRAG	2 cut(s)	50, 428
Sse9I	AATT	2 cut(s)	67, 147
SsiI	CCGC	9 cut(s)	159, 185, 452, 465, 470, 491, 551, 719, 840
SspMI	CTAG	5 cut(s)	165, 275, 510, 699, 752
StyD4I	CCNGG	2 cut(s)	386, 568
StyI	CCWWGG	2 cut(s)	205, 751
TaaI	ACNGT	5 cut(s)	296, 346, 650, 665, 675
TaiI	ACGT	4 cut(s)	372, 462, 499, 896
TaqI	TCGA	4 cut(s)	266, 324, 442, 500
TasI	AATT	2 cut(s)	67, 147
TauI	GCSGC	3 cut(s)	473, 494, 554
TfiI	GAWTC	3 cut(s)	757, 824, 847
Tru1I	TTAA	5 cut(s)	24, 336, 456, 777, 879
Tru9I	TTAA	5 cut(s)	24, 336, 456, 777, 879
TseI	GCWGC	2 cut(s)	473, 800
TspGWI	ACGGA	3 cut(s)	215, 332, 372
VpaK11BI	GGWCC	3 cut(s)	202, 566, 572
XagI	CCTNNNNNAGG	1 cut(s)	53
XmaJI	CCTAGG	1 cut(s)	751
XspI	CTAG	5 cut(s)	165, 275, 510, 699, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.