Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

31724332 .. 31725161

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG275600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAAAAATACGGCAGCCTAAATATTTTGTTCAGCAATGCAGGCATTATGGGTCCAATGACTGGCATTTTAGACCTCGACATCCAAGGTTTCGACAGCACAATGATCACAAATGTCCGCGGAGTTGCAGCGACAATCAAGCATGCCGCGCGTGCCATGGTGGCTAGAAAAATTCGCGGCTCAGTTATATGCACTACAAGCGTTGCAGGTTCACTTGGAGGTACAGCTCCACATGCTTATACAACATCAAAACATGCCTTAATCGGGTTGGTGAGATCGGCTTGCAGTGAGCTTGGTGCTTATGGGATTCGAGTAAATTGCATTTCCCCATTTGGTGTTGCAACCCCTCTTTCGTGTAAGGCTTATAACTTGGAGCCAAATGAGGTCGAAGCCAACAGCTGTGCCATTGCAAACTTGAAGGGGACTGTGTTGAAGGCTAGGCATGTCGCAGAGGCAGCTCTGTTCCTTGCTTCAGATGAATCGGGTTACGTTAGCGGACACAACTTAGTTGTTGATGGAGGCTTCTCGGTGGTTGATCACACAATGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

183

Amino Acids

18.99

Weight (kDa)

7.69

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	2 - 176	3e-43	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	2 - 118	1.5e-26	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
Acc36I	ACCTGC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccII	CGCG	4 cut(s)	120, 149, 151, 177
AciI	CCGC	5 cut(s)	118, 120, 147, 177, 495
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	62, 264
AgsI	TTSAA	2 cut(s)	418, 433
AluBI	AGCT	4 cut(s)	227, 292, 399, 458
AluI	AGCT	4 cut(s)	227, 292, 399, 458
ApeKI	GCWGC	3 cut(s)	15, 128, 455
ApoI	RAATTY	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	27, 140, 467
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BclI	TGATCA	2 cut(s)	105, 535
BfaI	CTAG	2 cut(s)	165, 438
BfuAI	ACCTGC	1 cut(s)	197
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	5 cut(s)	16, 129, 147, 178, 456
BlsI	GCNGC	5 cut(s)	17, 130, 148, 179, 457
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	54, 375
BsaJI	CCNNGG	3 cut(s)	85, 118, 156
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 264
Bse1I	ACTGG	1 cut(s)	67
Bse3DI	GCAATG	2 cut(s)	43, 405
BseDI	CCNNGG	3 cut(s)	85, 118, 156
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	62, 264
BseMI	GCAATG	2 cut(s)	43, 405
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	3 cut(s)	27, 140, 467
Bsh1236I	CGCG	4 cut(s)	120, 149, 151, 177
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	62, 264
BsmFI	GGGAC	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	105, 275, 535
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	5 cut(s)	118, 120, 147, 177, 495
BspCNI	CTCAG	1 cut(s)	194
BspFNI	CGCG	4 cut(s)	120, 149, 151, 177
BspLI	GGNNCC	2 cut(s)	54, 375
BspMI	ACCTGC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	43, 405
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	3 cut(s)	85, 118, 156
BssMI	GATC	3 cut(s)	105, 275, 535
BssT1I	CCWWGG	2 cut(s)	85, 156
Bst4CI	ACNGT	1 cut(s)	427
BstC8I	GCNNGC	4 cut(s)	43, 144, 153, 283
BstDEI	CTNAG	2 cut(s)	181, 505
BstDSI	CCRYGG	2 cut(s)	118, 156
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	4 cut(s)	120, 149, 151, 177
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	108, 278, 538
BstMBI	GATC	3 cut(s)	105, 275, 535
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 148, 152, 161, 198, 233, 455
BstNSI	RCATGY	4 cut(s)	146, 236, 257, 446
BstUI	CGCG	4 cut(s)	120, 149, 151, 177
BstV1I	GCAGC	3 cut(s)	27, 140, 467
BtgI	CCRYGG	2 cut(s)	118, 156
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	4 cut(s)	43, 144, 153, 283
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	53
Cfr42I	CCGCGG	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	5 cut(s)	143, 157, 233, 254, 443
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	181, 505
DpnI	GATC	3 cut(s)	107, 277, 537
DpnII	GATC	3 cut(s)	105, 275, 535
Eco130I	CCWWGG	2 cut(s)	85, 156
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	456
EcoT14I	CCWWGG	2 cut(s)	85, 156
ErhI	CCWWGG	2 cut(s)	85, 156
FaeI	CATG	5 cut(s)	146, 160, 236, 257, 446
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	5 cut(s)	142, 156, 232, 253, 442
FbaI	TGATCA	2 cut(s)	105, 535
Fnu4HI	GCNGC	5 cut(s)	16, 129, 147, 178, 456
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	5 cut(s)	16, 129, 147, 178, 456
FspBI	CTAG	2 cut(s)	165, 438
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	5 cut(s)	16, 129, 147, 178, 456
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	5 cut(s)	146, 160, 236, 257, 446
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	2 cut(s)	307, 479
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	475
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	412, 427
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	8 cut(s)	41, 128, 192, 206, 285, 321, 341, 410
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 148, 152, 161, 198, 233, 455
HpyF3I	CTNAG	2 cut(s)	181, 505
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	5 cut(s)	146, 160, 236, 257, 446
HspAI	GCGC	1 cut(s)	149
Ksp22I	TGATCA	2 cut(s)	105, 535
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	105, 275, 535
LmnI	GCTCC	2 cut(s)	232, 373
LpnPI	CCDG	3 cut(s)	27, 48, 192
Lsp1109I	GCAGC	3 cut(s)	27, 140, 467
MaeI	CTAG	2 cut(s)	165, 438
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	3 cut(s)	107, 277, 537
MboI	GATC	3 cut(s)	105, 275, 535
MluCI	AATT	2 cut(s)	171, 316
MnlI	CCTC	6 cut(s)	86, 212, 357, 376, 445, 512
MseI	TTAA	1 cut(s)	260
MspA1I	CMGCKG	2 cut(s)	120, 399
MvnI	CGCG	4 cut(s)	120, 149, 151, 177
MwoI	GCNNNNNNNGC	7 cut(s)	42, 148, 152, 161, 198, 233, 455
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	105, 275, 535
NlaIII	CATG	5 cut(s)	146, 160, 236, 257, 446
NlaIV	GGNNCC	2 cut(s)	54, 375
NspI	RCATGY	4 cut(s)	146, 236, 257, 446
PaeI	GCATGC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	307, 479
PflMI	CCANNNNNTGG	1 cut(s)	62
PkrI	GCNGC	5 cut(s)	17, 130, 148, 179, 457
PsiI	TTATAA	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	54, 375
PspPI	GGNCC	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	399
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SacII	CCGCGG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	5 cut(s)	16, 129, 147, 178, 456
Sau3AI	GATC	3 cut(s)	105, 275, 535
Sau96I	GGNCC	1 cut(s)	53
Sfr303I	CCGCGG	1 cut(s)	121
SgrBI	CCGCGG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	53
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	2 cut(s)	171, 316
SsiI	CCGC	5 cut(s)	118, 120, 147, 177, 495
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	2 cut(s)	165, 438
StyI	CCWWGG	2 cut(s)	85, 156
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	4 cut(s)	78, 93, 310, 387
TasI	AATT	2 cut(s)	171, 316
TauI	GCSGC	2 cut(s)	149, 180
TfiI	GAWTC	2 cut(s)	307, 479
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	3 cut(s)	15, 128, 455
TspDTI	ATGAA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	292
Van91I	CCANNNNNTGG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	4 cut(s)	146, 236, 257, 446
XspI	CTAG	2 cut(s)	165, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.