Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

40219529 .. 40222123

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG330500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCTAAGTCAAGGTTGGAGGGCAAGGTGGCTCTCATCACTGGTGCAGCTGGTGGCATTGGTGAGGAAGCAGCAAGACTTTTTGCAGCGAATGGAGCTTTTGTTGTCGTAGCTGATATTCAAGATGAATTGGGTCTTCAAGTTGTAGCCTCAATAGCCTCGGAAAGAGTCTCTTACTTCCACTGCGACGTCAGAGACGAAAACCAAGTTGAACAAACAGTAGGTTTCGCATTGGAAAAATACGGTAGCCTAGACGTTTTGTTCAGCAATGCAGGAATTATGGGTCCAATGACCGGCATTTTAGACCTCGACATTCAAGGTTTCGACAACACAATGATCACAAATGTCCGTGGAGTTGCAGCGACAATCAAGCATGCCGCGCGTGCCATGGTTGCTAGAAAAATCCGAGGTTCAGTTATATGCACTACAAGCGTTGCAAGTTCACTTGGAGGTACAGCTCCACATGCTTATACAACATCGAAACATGCCTTAATCGGGTTGGTGAGATCGGCTTGCAGTGAGCTTGGTGCTTATGGGATTCGAGTGAACTGCATTTCCCCATTTGGTGTTGCAACCCCTCTTTCGTGCAAGGCTTATAACTTGGAGCCGAAAGAGGTCGAAGCCAATAGTAGTGTCATTGCAAACTTGAAGGGGACTGTGTTGAAGGCTAGGCATATCGCAGAGGCAGCTATGTTTCTTGCTTCAGATGAATCCTGTTACGTTAGCGGACACAACTTGGTTGTTGATGGAGGCTTCTCGGTGGTTGATCACAGTATTCCACCCGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

263

Amino Acids

27.43

Weight (kDa)

5.97

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 195	1.2e-47	short chain dehydrogenase
KR	PF08659	11 - 171	7.1e-08	KR domain
adh_short_C2	PF13561	15 - 253	4.9e-61	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AatII	GACGTC	1 cut(s)	192
AccII	CGCG	2 cut(s)	380, 382
AciI	CCGC	3 cut(s)	378, 726, 783
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	293, 495
AgsI	TTSAA	6 cut(s)	122, 140, 212, 317, 649, 664
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
AluBI	AGCT	6 cut(s)	50, 98, 113, 458, 523, 689
AluI	AGCT	6 cut(s)	50, 98, 113, 458, 523, 689
Alw26I	GTCTC	2 cut(s)	175, 189
ApeKI	GCWGC	5 cut(s)	47, 71, 86, 359, 686
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	2 cut(s)	74, 514
AvaII	GGWCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	5 cut(s)	59, 83, 98, 371, 698
BccI	CCATC	1 cut(s)	740
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BclI	TGATCA	2 cut(s)	336, 766
BcoDI	GTCTC	2 cut(s)	175, 189
BfaI	CTAG	3 cut(s)	251, 396, 669
BisI	GCNGC	6 cut(s)	48, 72, 87, 360, 378, 687
BlsI	GCNGC	6 cut(s)	49, 73, 88, 361, 379, 688
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	2 cut(s)	285, 606
BpiI	GAAGAC	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	159, 349, 387, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 495
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	2 cut(s)	274, 636
BseDI	CCNNGG	4 cut(s)	159, 349, 387, 406
BseLI	CCNNNNNNNGG	2 cut(s)	293, 495
BseMI	GCAATG	2 cut(s)	274, 636
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	5 cut(s)	59, 83, 98, 371, 698
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	2 cut(s)	380, 382
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	293, 495
BsmAI	GTCTC	2 cut(s)	175, 189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	667
Bsp143I	GATC	3 cut(s)	336, 506, 766
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	3 cut(s)	378, 726, 783
BspFNI	CGCG	2 cut(s)	380, 382
BspLI	GGNNCC	2 cut(s)	285, 606
BsrDI	GCAATG	2 cut(s)	274, 636
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	4 cut(s)	159, 349, 387, 406
BssMI	GATC	3 cut(s)	336, 506, 766
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	4 cut(s)	220, 245, 658, 773
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	3 cut(s)	375, 384, 514
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	2 cut(s)	349, 387
BstFNI	CGCG	2 cut(s)	380, 382
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	3 cut(s)	339, 509, 769
BstMAI	GTCTC	2 cut(s)	175, 189
BstMBI	GATC	3 cut(s)	336, 506, 766
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 155, 379, 383, 392, 429, 464, 686
BstNSI	RCATGY	3 cut(s)	377, 467, 488
BstUI	CGCG	2 cut(s)	380, 382
BstV1I	GCAGC	5 cut(s)	59, 83, 98, 371, 698
BstV2I	GAAGAC	1 cut(s)	128
BtgI	CCRYGG	2 cut(s)	349, 387
BtsI	GCAGTG	2 cut(s)	181, 523
BtsIMutI	CAGTG	3 cut(s)	39, 181, 523
Cac8I	GCNNGC	3 cut(s)	375, 384, 514
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	4 cut(s)	374, 388, 464, 485
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	3 cut(s)	338, 508, 768
DpnII	GATC	3 cut(s)	336, 506, 766
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	4 cut(s)	377, 391, 467, 488
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	4 cut(s)	373, 387, 463, 484
FauI	CCCGC	1 cut(s)	790
FbaI	TGATCA	2 cut(s)	336, 766
Fnu4HI	GCNGC	6 cut(s)	48, 72, 87, 360, 378, 687
Fsp4HI	GCNGC	6 cut(s)	48, 72, 87, 360, 378, 687
FspBI	CTAG	3 cut(s)	251, 396, 669
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	6 cut(s)	48, 72, 87, 360, 378, 687
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	377, 391, 467, 488
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	3 cut(s)	168, 538, 710
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	74, 514
Hpy166II	GTNNAC	2 cut(s)	443, 547
Hpy188I	TCNGA	4 cut(s)	163, 194, 407, 706
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	443, 547
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	643, 658
HpyCH4III	ACNGT	4 cut(s)	220, 245, 658, 773
HpyCH4IV	ACGT	3 cut(s)	189, 255, 720
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 155, 379, 383, 392, 429, 464, 686
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	3 cut(s)	189, 255, 720
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	377, 391, 467, 488
HspAI	GCGC	1 cut(s)	380
Ksp22I	TGATCA	2 cut(s)	336, 766
Kzo9I	GATC	3 cut(s)	336, 506, 766
LmnI	GCTCC	3 cut(s)	95, 463, 604
LpnPI	CCDG	5 cut(s)	27, 36, 258, 307, 727
Lsp1109I	GCAGC	5 cut(s)	59, 83, 98, 371, 698
MaeI	CTAG	3 cut(s)	251, 396, 669
MaeII	ACGT	3 cut(s)	189, 255, 720
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	3 cut(s)	338, 508, 768
MboI	GATC	3 cut(s)	336, 506, 766
MboII	GAAGA	1 cut(s)	128
MluCI	AATT	2 cut(s)	128, 276
MlyI	GAGTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	294
MvnI	CGCG	2 cut(s)	380, 382
MwoI	GCNNNNNNNGC	8 cut(s)	95, 155, 379, 383, 392, 429, 464, 686
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	3 cut(s)	336, 506, 766
NlaIII	CATG	4 cut(s)	377, 391, 467, 488
NlaIV	GGNNCC	2 cut(s)	285, 606
NspI	RCATGY	3 cut(s)	377, 467, 488
PaeI	GCATGC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	538, 710
PkrI	GCNGC	6 cut(s)	49, 73, 88, 361, 379, 688
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	285, 606
PspPI	GGNCC	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	6 cut(s)	48, 72, 87, 360, 378, 687
Sau3AI	GATC	3 cut(s)	336, 506, 766
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	284
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	2 cut(s)	128, 276
SsiI	CCGC	3 cut(s)	378, 726, 783
SspMI	CTAG	3 cut(s)	251, 396, 669
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	4 cut(s)	220, 245, 658, 773
TaiI	ACGT	3 cut(s)	192, 258, 723
TaqI	TCGA	5 cut(s)	309, 324, 479, 541, 618
TasI	AATT	2 cut(s)	128, 276
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	538, 710
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	3 cut(s)	46, 188, 523
TseI	GCWGC	5 cut(s)	47, 71, 86, 359, 686
TspDTI	ATGAA	2 cut(s)	141, 723
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	46, 188, 523
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	3 cut(s)	377, 467, 488
XspI	CTAG	3 cut(s)	251, 396, 669
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.