Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

19349348 .. 19350650

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCGGGACTCAGATTGGATGGCAAAATCGCAATAATAACAGGCGGAGCTAGCGGGATTGGAGCCGAAGCGGTTAGGCTGTTCACGGACCACGGAGCTAAGGTGGTCATCGTTGACTTTCAAGAAGAACTTGGTCAAAACGTTGCCGTTTCTGTCGGGAAAGACAAAGCAAGTTTTTACCGTTGCGATGTTACAAACGAAAAGGAGGTAGAAAACGCCGTTAAGTTCACCGTCGAAAAGTACGGGAAGCTTGACGTTCTCTTTAGTAACGCCGGCGTTATGGAACAGCCGGGAAGCTTTCTCGACTTGAATCTGGAACAGTTTGACCGAACCATGGCGGTCAACGTTCGTGGTGCGGCTGCGTTTATCAAACACGCTGCACGAGCCATGGTGGAGAAAGGCACGCGTGGGTCAATCGTATGTACGACCAGCGTCGCGTCGGAGATCGGTGGTCCAGGACCTCACGCGTACACGGCGTCTAAGCACGCTCTTCTCGGGCTGGTTAAATCGGCTTGTGGCGGGCTAGGGAAGTACGGGATTAGAGTCAACGGCGTTGCACCATACGCGGTGGCGACGGCGATAAATAGCCGTGACGAGGAAACGGTGAGGATGGTGGAGGAATATAGCGCAGCCACGGGGATTCTCAAAGGTGTGGTGCTTAAGGCTCGCCATGTGGCAGAGGCGGCTTTGTTTCTGGCTTCGGATGATTCGGCTTACGTTAGCGGTCAGAATCTGGCTGTTGACGGGGGTTATAGCGTCGTTAAGCCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0046872 GO:0046914 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

257

Amino Acids

26.9

Weight (kDa)

6.53

Isoelectric Point (pI)

17.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 200	5.8e-51	short chain dehydrogenase
KR	PF08659	12 - 169	3.5e-12	KR domain
adh_short_C2	PF13561	17 - 252	2e-64	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	406, 437, 467, 566
AciI	CCGC	9 cut(s)	45, 54, 71, 338, 356, 519, 566, 683, 723
AclI	AACGTT	2 cut(s)	141, 345
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	4 cut(s)	242, 424, 470, 533
AfiI	CCNNNNNNNGG	2 cut(s)	334, 595
AflII	CTTAAG	1 cut(s)	659
AflIII	ACRYGT	2 cut(s)	404, 465
AgsI	TTSAA	2 cut(s)	122, 310
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	4 cut(s)	50, 98, 250, 297
AluI	AGCT	4 cut(s)	50, 98, 250, 297
AlwNI	CAGNNNCTG	1 cut(s)	733
Ama87I	CYCGRG	1 cut(s)	494
ApeKI	GCWGC	3 cut(s)	359, 377, 629
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	3 cut(s)	88, 452, 458
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	220, 616
AsuNHI	GCTAGC	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	3 cut(s)	88, 452, 458
BauI	CACGAG	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	346, 364, 641
BccI	CCATC	2 cut(s)	14, 604
BceAI	ACGGC	6 cut(s)	131, 203, 489, 565, 573, 591
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	51, 524
BfrI	CTTAAG	1 cut(s)	659
BisI	GCNGC	5 cut(s)	357, 360, 378, 630, 684
BlsI	GCNGC	5 cut(s)	358, 361, 379, 631, 685
Bme1390I	CCNGG	2 cut(s)	291, 456
Bme18I	GGWCC	3 cut(s)	88, 452, 458
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	88, 452, 458
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	291, 456
BmtI	GCTAGC	1 cut(s)	54
BoxI	GACNNNNGTC	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	4 cut(s)	91, 333, 387, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 595
Bse118I	RCCGGY	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	91, 333, 387, 633
BseGI	GGATG	3 cut(s)	25, 615, 709
BseLI	CCNNNNNNNGG	2 cut(s)	334, 595
BseMII	CTCAG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	346, 364, 641
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	4 cut(s)	406, 437, 467, 566
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	273, 290
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	334, 595
BsmFI	GGGAC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	494
Bsp143I	GATC	1 cut(s)	444
Bsp19I	CCATGG	2 cut(s)	333, 387
BspACI	CCGC	9 cut(s)	45, 54, 71, 338, 356, 519, 566, 683, 723
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	4 cut(s)	406, 437, 467, 566
BspLI	GGNNCC	1 cut(s)	64
BspOI	GCTAGC	1 cut(s)	54
BspQI	GCTCTTC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	91, 333, 387, 633
BssMI	GATC	1 cut(s)	444
BssNI	GRCGYC	1 cut(s)	476
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	333, 387
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	4 cut(s)	182, 232, 321, 604
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	659
BstC8I	GCNNGC	6 cut(s)	52, 274, 404, 486, 521, 667
BstDEI	CTNAG	3 cut(s)	11, 99, 480
BstDSI	CCRYGG	4 cut(s)	91, 333, 387, 633
BstF5I	GGATG	3 cut(s)	25, 615, 709
BstFNI	CGCG	4 cut(s)	406, 437, 467, 566
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	1 cut(s)	447
BstMBI	GATC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 383, 473, 563, 683
BstNI	CCWGG	1 cut(s)	456
BstPAI	GACNNNNGTC	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	289, 454
BstUI	CGCG	4 cut(s)	406, 437, 467, 566
BstV1I	GCAGC	3 cut(s)	346, 364, 641
BtgI	CCRYGG	4 cut(s)	91, 333, 387, 633
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	25, 615, 709
Cac8I	GCNNGC	6 cut(s)	52, 274, 404, 486, 521, 667
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	1 cut(s)	629
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	3 cut(s)	88, 452, 458
CseI	GACGC	4 cut(s)	421, 426, 465, 745
Csp6I	GTAC	4 cut(s)	241, 423, 469, 532
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	3 cut(s)	334, 388, 671
CviQI	GTAC	4 cut(s)	241, 423, 469, 532
DdeI	CTNAG	3 cut(s)	11, 99, 480
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	333, 387
Eco47I	GGWCC	3 cut(s)	88, 452, 458
Eco88I	CYCGRG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	333, 387
ErhI	CCWWGG	2 cut(s)	333, 387
FaeI	CATG	3 cut(s)	337, 391, 674
FaiI	YATR	8 cut(s)	281, 335, 389, 421, 562, 624, 672, 753
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	333, 387, 670
FauI	CCCGC	2 cut(s)	47, 512
Fnu4HI	GCNGC	5 cut(s)	357, 360, 378, 630, 684
FokI	GGATG	3 cut(s)	32, 622, 716
Fsp4HI	GCNGC	5 cut(s)	357, 360, 378, 630, 684
FspBI	CTAG	2 cut(s)	51, 524
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	5 cut(s)	357, 360, 378, 630, 684
HapII	CCGG	2 cut(s)	273, 290
HgaI	GACGC	4 cut(s)	421, 426, 465, 745
HhaI	GCGC	1 cut(s)	629
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	3 cut(s)	337, 391, 674
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HincII	GTYRAC	4 cut(s)	115, 343, 547, 742
HindII	GTYRAC	4 cut(s)	115, 343, 547, 742
HindIII	AAGCTT	2 cut(s)	248, 295
HinfI	GANTC	6 cut(s)	9, 310, 543, 640, 707, 730
HpaII	CCGG	2 cut(s)	273, 290
HphI	GGTGA	2 cut(s)	220, 616
Hpy166II	GTNNAC	7 cut(s)	84, 115, 228, 343, 471, 547, 742
Hpy188I	TCNGA	4 cut(s)	14, 442, 703, 729
Hpy188III	TCNNGA	5 cut(s)	6, 122, 157, 302, 314
Hpy8I	GTNNAC	7 cut(s)	84, 115, 228, 343, 471, 547, 742
Hpy99I	CGWCG	5 cut(s)	236, 437, 442, 577, 761
HpyCH4III	ACNGT	4 cut(s)	182, 232, 321, 604
HpyCH4IV	ACGT	4 cut(s)	141, 255, 345, 717
HpyCH4V	TGCA	2 cut(s)	380, 557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 383, 473, 563, 683
HpyF3I	CTNAG	3 cut(s)	11, 99, 480
HpySE526I	ACGT	4 cut(s)	141, 255, 345, 717
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	3 cut(s)	337, 391, 674
HspAI	GCGC	1 cut(s)	627
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	444
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	3 cut(s)	47, 62, 95
Lsp1109I	GCAGC	3 cut(s)	346, 364, 641
MaeI	CTAG	2 cut(s)	51, 524
MaeII	ACGT	4 cut(s)	141, 255, 345, 717
MaeIII	GTNAC	3 cut(s)	190, 266, 590
MalI	GATC	1 cut(s)	446
MboI	GATC	1 cut(s)	444
MboII	GAAGA	2 cut(s)	137, 482
MluI	ACGCGT	2 cut(s)	404, 465
MlyI	GAGTC	2 cut(s)	3, 552
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	6 cut(s)	199, 471, 589, 600, 610, 673
MreI	CGCCGGCG	1 cut(s)	272
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	4 cut(s)	222, 504, 660, 762
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	2 cut(s)	273, 290
MspR9I	CCNGG	2 cut(s)	291, 456
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	4 cut(s)	406, 437, 467, 566
MwoI	GCNNNNNNNGC	5 cut(s)	51, 383, 473, 563, 683
NaeI	GCCGGC	1 cut(s)	274
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	2 cut(s)	333, 387
NdeII	GATC	1 cut(s)	444
NgoMIV	GCCGGC	1 cut(s)	272
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	3 cut(s)	337, 391, 674
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	590
PciSI	GCTCTTC	1 cut(s)	495
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	310, 640, 707, 730
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	358, 361, 379, 631, 685
PleI	GAGTC	2 cut(s)	3, 551
PpsI	GAGTC	2 cut(s)	3, 551
PpuMI	RGGWCCY	1 cut(s)	458
PshAI	GACNNNNGTC	1 cut(s)	431
Psp1406I	AACGTT	2 cut(s)	141, 345
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	3 cut(s)	88, 452, 458
PspPPI	RGGWCCY	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	733
RsaI	GTAC	4 cut(s)	242, 424, 470, 533
RsaNI	GTAC	4 cut(s)	241, 423, 469, 532
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	222, 504, 660, 762
SatI	GCNGC	5 cut(s)	357, 360, 378, 630, 684
Sau3AI	GATC	1 cut(s)	444
Sau96I	GGNCC	3 cut(s)	88, 452, 458
SchI	GAGTC	2 cut(s)	3, 552
ScrFI	CCNGG	2 cut(s)	291, 456
SgrAI	CRCCGGYG	1 cut(s)	272
SinI	GGWCC	3 cut(s)	88, 452, 458
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SsiI	CCGC	9 cut(s)	45, 54, 71, 338, 356, 519, 566, 683, 723
SspMI	CTAG	2 cut(s)	51, 524
StyD4I	CCNGG	2 cut(s)	289, 454
StyI	CCWWGG	2 cut(s)	333, 387
TaaI	ACNGT	4 cut(s)	182, 232, 321, 604
TaiI	ACGT	4 cut(s)	144, 258, 348, 720
TaqI	TCGA	2 cut(s)	234, 303
TaqII	GACCGA	1 cut(s)	342
TauI	GCSGC	2 cut(s)	359, 686
TfiI	GAWTC	4 cut(s)	310, 640, 707, 730
Tru1I	TTAA	4 cut(s)	222, 504, 660, 762
Tru9I	TTAA	4 cut(s)	222, 504, 660, 762
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	3 cut(s)	359, 377, 629
Tsp45I	GTSAC	1 cut(s)	590
TspGWI	ACGGA	2 cut(s)	101, 108
Vha464I	CTTAAG	1 cut(s)	659
VpaK11BI	GGWCC	3 cut(s)	88, 452, 458
XspI	CTAG	2 cut(s)	51, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.