Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

31590647 .. 31593308

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G024560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCCCAACTGGGCAAGGTGGCCCTCATCACTGGTGCAGCTGGTGGCATTGGTGAGGAAGCAGCAAGACTTTTCGCAGCGAATGGAGCTTTTGTTGTCGTAGCTGATATTCAAGACGAATTGGGTCTTCAAGTTGTGGCCTCAATAGCCTCGGAAAGAGTCTCATACTTCCACTGCGACGTCAGAGACGAAAACCAAGTTGAACAAACAGTAAGTTACACATTGGAAAAATACGGCAGCCTAAATATTTTGTTCAGCAATGCAGGCATTATGGGTCCAATGACTGGCATTTTAGACCTCGACATCCAAGGTTTCGACAACACAATGATCACAAATGTCCGCGGAGTTGCAGCGACAATCAAGCATGCCGCGCGTGCCATGGTGGCTAGAAAAATCCGCGGCTCAGTTATATGCACTACAAGCGTTGCAGGTTCACTTGGAGGTACAGCTCCACATGCTTATACAACATCAAAACATGCCTTAATCGGGTTGGTGAGATCGGCTTGCAGTGAGCTTGGTGCTTATGGGATTCGAGTAAATTGCATTTCCCCATTTGGTGTTGCAACCCCTCTTTCGTGTAAGGCTTATAACTTGGAGCCAAATGAGGTCGAAGCCAACAGCTGTGCCATTGCAAACTTGAAGGGGACTGTGTTGAAGGCTAGGCATGTCGCAGAGGCAGCTCTGTTCCTTGCTTCAGATGAATCGGGTTACGTTAGCGGACACAACTTAGTTGTTGATGGAGGCTTCTCGGTGGTTGATCACAGTTTTTCACCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

259

Amino Acids

26.97

Weight (kDa)

5.78

Isoelectric Point (pI)

26.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	6 - 192	4.1e-47	short chain dehydrogenase
KR	PF08659	8 - 168	1.8e-08	KR domain
adh_short_C2	PF13561	12 - 250	7.1e-61	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	419
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccII	CGCG	4 cut(s)	342, 371, 373, 399
AciI	CCGC	6 cut(s)	340, 342, 369, 397, 399, 717
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	2 cut(s)	284, 486
AgsI	TTSAA	5 cut(s)	113, 131, 203, 640, 655
AluBI	AGCT	7 cut(s)	41, 89, 104, 449, 514, 621, 680
AluI	AGCT	7 cut(s)	41, 89, 104, 449, 514, 621, 680
Alw26I	GTCTC	2 cut(s)	166, 180
AoxI	GGCC	2 cut(s)	21, 138
ApeKI	GCWGC	6 cut(s)	38, 62, 77, 237, 350, 677
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	2 cut(s)	22, 275
AsuHPI	GGTGA	3 cut(s)	65, 505, 762
AvaII	GGWCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	6 cut(s)	50, 74, 89, 249, 362, 689
BccI	CCATC	1 cut(s)	731
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	522, 556
BclI	TGATCA	2 cut(s)	327, 757
BcoDI	GTCTC	2 cut(s)	166, 180
BfaI	CTAG	2 cut(s)	387, 660
BfuAI	ACCTGC	1 cut(s)	419
BglI	GCCNNNNNGGC	1 cut(s)	383
BisI	GCNGC	8 cut(s)	39, 63, 78, 238, 351, 369, 400, 678
BlsI	GCNGC	8 cut(s)	40, 64, 79, 239, 352, 370, 401, 679
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	22, 275
BmiI	GGNNCC	2 cut(s)	276, 597
BmrI	ACTGGG	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	5 cut(s)	150, 307, 340, 378, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 486
Bse1I	ACTGG	3 cut(s)	15, 37, 289
Bse3DI	GCAATG	2 cut(s)	265, 627
BseDI	CCNNGG	5 cut(s)	150, 307, 340, 378, 397
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	284, 486
BseMI	GCAATG	2 cut(s)	265, 627
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	3 cut(s)	15, 37, 289
BseXI	GCAGC	6 cut(s)	50, 74, 89, 249, 362, 689
BsgI	GTGCAG	1 cut(s)	57
Bsh1236I	CGCG	4 cut(s)	342, 371, 373, 399
BshFI	GGCC	2 cut(s)	23, 140
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	2 cut(s)	284, 486
BsmAI	GTCTC	2 cut(s)	166, 180
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	658
BsnI	GGCC	2 cut(s)	23, 140
Bsp143I	GATC	3 cut(s)	327, 497, 757
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	6 cut(s)	340, 342, 369, 397, 399, 717
BspANI	GGCC	2 cut(s)	23, 140
BspCNI	CTCAG	1 cut(s)	416
BspFNI	CGCG	4 cut(s)	342, 371, 373, 399
BspLI	GGNNCC	2 cut(s)	276, 597
BspMI	ACCTGC	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	265, 627
BsrI	ACTGG	3 cut(s)	15, 37, 289
BssECI	CCNNGG	5 cut(s)	150, 307, 340, 378, 397
BssMI	GATC	3 cut(s)	327, 497, 757
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	307, 378
Bst4CI	ACNGT	3 cut(s)	211, 649, 764
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	4 cut(s)	265, 366, 375, 505
BstDEI	CTNAG	2 cut(s)	403, 727
BstDSI	CCRYGG	3 cut(s)	340, 378, 397
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	4 cut(s)	342, 371, 373, 399
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	3 cut(s)	330, 500, 760
BstMAI	GTCTC	2 cut(s)	166, 180
BstMBI	GATC	3 cut(s)	327, 497, 757
BstMWI	GCNNNNNNNGC	9 cut(s)	86, 146, 264, 370, 374, 383, 420, 455, 677
BstNSI	RCATGY	4 cut(s)	368, 458, 479, 668
BstUI	CGCG	4 cut(s)	342, 371, 373, 399
BstV1I	GCAGC	6 cut(s)	50, 74, 89, 249, 362, 689
BstV2I	GAAGAC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	23, 140
BtgI	CCRYGG	3 cut(s)	340, 378, 397
BtsCI	GGATG	1 cut(s)	303
BtsI	GCAGTG	2 cut(s)	172, 514
BtsIMutI	CAGTG	3 cut(s)	30, 172, 514
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	4 cut(s)	265, 366, 375, 505
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	22, 275
Cfr42I	CCGCGG	2 cut(s)	343, 400
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	5 cut(s)	365, 379, 455, 476, 665
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	2 cut(s)	403, 727
DpnI	GATC	3 cut(s)	329, 499, 759
DpnII	GATC	3 cut(s)	327, 497, 757
Eco130I	CCWWGG	2 cut(s)	307, 378
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	678
EcoT14I	CCWWGG	2 cut(s)	307, 378
ErhI	CCWWGG	2 cut(s)	307, 378
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	5 cut(s)	368, 382, 458, 479, 668
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	5 cut(s)	364, 378, 454, 475, 664
FbaI	TGATCA	2 cut(s)	327, 757
Fnu4HI	GCNGC	8 cut(s)	39, 63, 78, 238, 351, 369, 400, 678
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	8 cut(s)	39, 63, 78, 238, 351, 369, 400, 678
FspBI	CTAG	2 cut(s)	387, 660
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	8 cut(s)	39, 63, 78, 238, 351, 369, 400, 678
HaeIII	GGCC	2 cut(s)	23, 140
HhaI	GCGC	1 cut(s)	373
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	368, 382, 458, 479, 668
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	3 cut(s)	159, 529, 701
HphI	GGTGA	3 cut(s)	65, 505, 762
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	3 cut(s)	154, 185, 697
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	434
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	634, 649
HpyCH4III	ACNGT	3 cut(s)	211, 649, 764
HpyCH4IV	ACGT	2 cut(s)	180, 711
HpyCH4V	TGCA	9 cut(s)	38, 263, 350, 414, 428, 507, 543, 563, 632
HpyF10VI	GCNNNNNNNGC	9 cut(s)	86, 146, 264, 370, 374, 383, 420, 455, 677
HpyF3I	CTNAG	2 cut(s)	403, 727
HpySE526I	ACGT	2 cut(s)	180, 711
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	368, 382, 458, 479, 668
HspAI	GCGC	1 cut(s)	371
Ksp22I	TGATCA	2 cut(s)	327, 757
KspI	CCGCGG	2 cut(s)	343, 400
Kzo9I	GATC	3 cut(s)	327, 497, 757
LmnI	GCTCC	3 cut(s)	86, 454, 595
LpnPI	CCDG	5 cut(s)	18, 27, 249, 270, 414
Lsp1109I	GCAGC	6 cut(s)	50, 74, 89, 249, 362, 689
MaeI	CTAG	2 cut(s)	387, 660
MaeII	ACGT	2 cut(s)	180, 711
MaeIII	GTNAC	2 cut(s)	215, 707
MalI	GATC	3 cut(s)	329, 499, 759
MboI	GATC	3 cut(s)	327, 497, 757
MboII	GAAGA	1 cut(s)	119
MluCI	AATT	2 cut(s)	119, 538
MlyI	GAGTC	1 cut(s)	168
MseI	TTAA	1 cut(s)	482
MspA1I	CMGCKG	4 cut(s)	41, 342, 399, 621
MvnI	CGCG	4 cut(s)	342, 371, 373, 399
MwoI	GCNNNNNNNGC	9 cut(s)	86, 146, 264, 370, 374, 383, 420, 455, 677
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	3 cut(s)	327, 497, 757
NlaIII	CATG	5 cut(s)	368, 382, 458, 479, 668
NlaIV	GGNNCC	2 cut(s)	276, 597
NspI	RCATGY	4 cut(s)	368, 458, 479, 668
PaeI	GCATGC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	529, 701
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	8 cut(s)	40, 64, 79, 239, 352, 370, 401, 679
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	588
PspN4I	GGNNCC	2 cut(s)	276, 597
PspPI	GGNCC	2 cut(s)	22, 275
PvuII	CAGCTG	2 cut(s)	41, 621
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SacII	CCGCGG	2 cut(s)	343, 400
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	8 cut(s)	39, 63, 78, 238, 351, 369, 400, 678
Sau3AI	GATC	3 cut(s)	327, 497, 757
Sau96I	GGNCC	2 cut(s)	22, 275
SchI	GAGTC	1 cut(s)	168
Sfr303I	CCGCGG	2 cut(s)	343, 400
SgrBI	CCGCGG	2 cut(s)	343, 400
SinI	GGWCC	1 cut(s)	275
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	2 cut(s)	119, 538
SsiI	CCGC	6 cut(s)	340, 342, 369, 397, 399, 717
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	2 cut(s)	387, 660
StyI	CCWWGG	2 cut(s)	307, 378
TaaI	ACNGT	3 cut(s)	211, 649, 764
TaiI	ACGT	2 cut(s)	183, 714
TaqI	TCGA	4 cut(s)	300, 315, 532, 609
TasI	AATT	2 cut(s)	119, 538
TauI	GCSGC	2 cut(s)	371, 402
TfiI	GAWTC	2 cut(s)	529, 701
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	3 cut(s)	37, 179, 514
TseI	GCWGC	6 cut(s)	38, 62, 77, 237, 350, 677
TspDTI	ATGAA	1 cut(s)	714
TspRI	CASTG	3 cut(s)	37, 179, 514
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	275
XceI	RCATGY	4 cut(s)	368, 458, 479, 668
XspI	CTAG	2 cut(s)	387, 660
ZraI	GACGTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.