Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Forward (+)

25915885 .. 25916831

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g27840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGACCATGGGAGCTTTATAGAACAGCGGATACAGATCCAAAGAGCCTTATTTGCAAGTTTGAGGACACTCATCAATCAATGTCTAAGCCAAGGTTGGAGGGCAAGGTGGCCCTGATAACTGGTGGGGCAGCTGGGATTGGTGAGGACGCAGTCAGATTATTTGCAGCCAATGGAGCCTTTGTTGTTGTTGCTGATATCCAAGACGAATTAGCTCATCAACTTGTTGCCTCAATCGGCTCAGACAGAGTTAGCTACTGCCGCTGCGACGTCAGAGACGAAAACCAAGTCGAAAACACGGTGAACTTCACGTTGGAAAAATACGGCAGCCTCGACATTTTGTTCAGCAATGCAGGTGTCATGGGTCCGATGACTGGCATTTTAGACCTTGACATTCAAGGCTTTGACAACACAATGGCCACGAACGTTCGCGGTGTTGCTGCAACCATCAAGCACGCCGCGCGCGCCATGGTGGCACGTGCCGTGCGTGGTTCAATCATATGTACCACGAGTGTTGCAGCCTCTCTCGGAGGCACGGCTCCGCACGCTTACACAACTTCGAAACATGCTCTGTTGGGTTTGGTCAGAGGAGCTTGTAGTGAGCTCGGAGCTCACGGGATTCGAGTTAACAGCATTTCACCATTCGGAGTCGCAACCTCGCTTGCGTGCAAAGCGTACAATTTGGAGCCAGATGAGGTTGAGGCCAATAGCTCTGCCATAGGAAATTTGAAGGGCATTGCGTTGAAGGCTAGGCATGTGGCGGAGGCGGCTCTGTTTCTTGCCTCCGACGAATCGGCGTATGTCAGTGGACACAACTTGGTTGTCGACGGTGGATTCACGGTGGTTGATCACAGTTTTTCAGCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

290

Amino Acids

30.37

Weight (kDa)

5.7

Isoelectric Point (pI)

15.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
AatII	GACGTC	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	825
AccII	CGCG	4 cut(s)	432, 461, 463, 465
AciI	CCGC	7 cut(s)	29, 262, 432, 459, 542, 761, 767
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	724
AcvI	CACGTG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	505, 677
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	398, 495, 730, 745
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	8 cut(s)	16, 134, 215, 255, 593, 604, 611, 711
AluI	AGCT	8 cut(s)	16, 134, 215, 255, 593, 604, 611, 711
Alw21I	GWGCWC	2 cut(s)	606, 613
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	3 cut(s)	111, 417, 702
ApeKI	GCWGC	6 cut(s)	131, 167, 264, 327, 440, 518
ApoI	RAATTY	1 cut(s)	724
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspLEI	GCGC	3 cut(s)	463, 465, 467
AspS9I	GGNCC	2 cut(s)	112, 365
AsuHPI	GGTGA	3 cut(s)	155, 313, 630
AsuII	TTCGAA	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	606, 613
BauI	CACGAG	1 cut(s)	508
BbrPI	CACGTG	1 cut(s)	479
Bbv12I	GWGCWC	2 cut(s)	606, 613
BbvI	GCAGC	6 cut(s)	143, 179, 251, 339, 427, 530
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	3 cut(s)	340, 467, 552
BciVI	GTATCC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	750
BfuAI	ACCTGC	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	9 cut(s)	132, 168, 262, 265, 328, 441, 459, 519, 768
BlsI	GCNGC	9 cut(s)	133, 169, 263, 266, 329, 442, 460, 520, 769
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	2 cut(s)	112, 365
BmiI	GGNNCC	4 cut(s)	178, 366, 540, 687
Bpu14I	TTCGAA	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	8, 92, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	127, 379
Bse3DI	GCAATG	2 cut(s)	355, 735
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	8, 92, 468
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	2 cut(s)	355, 735
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	127, 379
BsePI	GCGCGC	2 cut(s)	461, 463
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	6 cut(s)	143, 179, 251, 339, 427, 530
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	4 cut(s)	432, 461, 463, 465
BshFI	GGCC	3 cut(s)	113, 419, 704
BsiHKAI	GWGCWC	2 cut(s)	606, 613
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	270
BsmBI	CGTCTC	1 cut(s)	270
BsnI	GGCC	3 cut(s)	113, 419, 704
Bsp119I	TTCGAA	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	606, 613
Bsp143I	GATC	2 cut(s)	37, 847
Bsp19I	CCATGG	2 cut(s)	8, 468
BspACI	CCGC	7 cut(s)	29, 262, 432, 459, 542, 761, 767
BspANI	GGCC	3 cut(s)	113, 419, 704
BspCNI	CTCAG	1 cut(s)	254
BspFNI	CGCG	4 cut(s)	432, 461, 463, 465
BspLI	GGNNCC	4 cut(s)	178, 366, 540, 687
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	560
BsrDI	GCAATG	2 cut(s)	355, 735
BsrI	ACTGG	2 cut(s)	127, 379
BssECI	CCNNGG	3 cut(s)	8, 92, 468
BssHII	GCGCGC	2 cut(s)	461, 463
BssMI	GATC	2 cut(s)	37, 847
BssNI	GRCGYC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	508
BssT1I	CCWWGG	3 cut(s)	8, 92, 468
Bst2BI	CACGAG	1 cut(s)	508
Bst4CI	ACNGT	4 cut(s)	301, 830, 841, 854
BstACI	GRCGYC	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	6 cut(s)	456, 463, 465, 546, 663, 667
BstDEI	CTNAG	2 cut(s)	87, 241
BstDSI	CCRYGG	2 cut(s)	8, 468
BstFNI	CGCG	4 cut(s)	432, 461, 463, 465
BstHHI	GCGC	3 cut(s)	463, 465, 467
BstKTI	GATC	2 cut(s)	40, 850
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	37, 847
BstNSI	RCATGY	2 cut(s)	569, 758
BstUI	CGCG	4 cut(s)	432, 461, 463, 465
BstV1I	GCAGC	6 cut(s)	143, 179, 251, 339, 427, 530
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	113, 419, 704
BtgI	CCRYGG	2 cut(s)	8, 468
BtsIMutI	CAGTG	1 cut(s)	811
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	6 cut(s)	456, 463, 465, 546, 663, 667
CfoI	GCGC	3 cut(s)	463, 465, 467
Cfr13I	GGNCC	2 cut(s)	112, 365
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	504, 676
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	5 cut(s)	9, 361, 469, 566, 755
CviQI	GTAC	2 cut(s)	504, 676
DdeI	CTNAG	2 cut(s)	87, 241
DpnI	GATC	2 cut(s)	39, 849
DpnII	GATC	2 cut(s)	37, 847
EaeI	YGGCCR	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	776
Ecl136II	GAGCTC	2 cut(s)	604, 611
Eco130I	CCWWGG	3 cut(s)	8, 92, 468
Eco24I	GRGCYC	2 cut(s)	606, 613
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	2 cut(s)	604, 611
Eco72I	CACGTG	1 cut(s)	479
EcoICRI	GAGCTC	2 cut(s)	604, 611
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	3 cut(s)	8, 92, 468
EcoT38I	GRGCYC	2 cut(s)	606, 613
ErhI	CCWWGG	3 cut(s)	8, 92, 468
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	5 cut(s)	12, 364, 472, 569, 758
FatI	CATG	5 cut(s)	8, 360, 468, 565, 754
FauNDI	CATATG	1 cut(s)	500
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	825
Fnu4HI	GCNGC	9 cut(s)	132, 168, 262, 265, 328, 441, 459, 519, 768
FriOI	GRGCYC	2 cut(s)	606, 613
Fsp4HI	GCNGC	9 cut(s)	132, 168, 262, 265, 328, 441, 459, 519, 768
FspBI	CTAG	1 cut(s)	750
GlaI	GCGC	3 cut(s)	462, 464, 466
GluI	GCNGC	9 cut(s)	132, 168, 262, 265, 328, 441, 459, 519, 768
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	113, 419, 704
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	3 cut(s)	463, 465, 467
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	5 cut(s)	12, 364, 472, 569, 758
Hin6I	GCGC	3 cut(s)	461, 463, 465
HinP1I	GCGC	3 cut(s)	461, 463, 465
HincII	GTYRAC	2 cut(s)	628, 826
HindII	GTYRAC	2 cut(s)	628, 826
HinfI	GANTC	4 cut(s)	619, 648, 791, 834
HpaI	GTTAAC	1 cut(s)	628
HphI	GGTGA	3 cut(s)	155, 313, 630
Hpy166II	GTNNAC	4 cut(s)	304, 628, 809, 826
Hpy188I	TCNGA	9 cut(s)	158, 244, 275, 369, 530, 587, 608, 647, 787
Hpy8I	GTNNAC	4 cut(s)	304, 628, 809, 826
Hpy99I	CGWCG	3 cut(s)	272, 791, 830
HpyAV	CCTTC	2 cut(s)	724, 739
HpyCH4III	ACNGT	4 cut(s)	301, 830, 841, 854
HpyCH4IV	ACGT	4 cut(s)	270, 311, 426, 478
HpyCH4V	TGCA	6 cut(s)	57, 167, 353, 443, 518, 669
HpyF3I	CTNAG	2 cut(s)	87, 241
HpySE526I	ACGT	4 cut(s)	270, 311, 426, 478
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	5 cut(s)	12, 364, 472, 569, 758
HspAI	GCGC	3 cut(s)	461, 463, 465
Ksp22I	TGATCA	1 cut(s)	847
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	37, 847
LmnI	GCTCC	6 cut(s)	13, 176, 544, 590, 608, 685
LpnPI	CCDG	6 cut(s)	108, 120, 128, 339, 360, 702
Lsp1109I	GCAGC	6 cut(s)	143, 179, 251, 339, 427, 530
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	4 cut(s)	270, 311, 426, 478
MalI	GATC	2 cut(s)	39, 849
MauBI	CGCGCGCG	1 cut(s)	461
MboI	GATC	2 cut(s)	37, 847
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	606, 613
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	3 cut(s)	209, 679, 724
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	3 cut(s)	78, 294, 810
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	3 cut(s)	29, 134, 264
MvnI	CGCG	4 cut(s)	432, 461, 463, 465
NcoI	CCATGG	2 cut(s)	8, 468
NdeI	CATATG	1 cut(s)	500
NdeII	GATC	2 cut(s)	37, 847
NlaIII	CATG	5 cut(s)	12, 364, 472, 569, 758
NlaIV	GGNNCC	4 cut(s)	178, 366, 540, 687
NspI	RCATGY	2 cut(s)	569, 758
NspV	TTCGAA	1 cut(s)	560
PaqCI	CACCTGC	1 cut(s)	344
PauI	GCGCGC	2 cut(s)	461, 463
PcsI	WCGNNNNNNNCGW	3 cut(s)	276, 330, 484
PfeI	GAWTC	3 cut(s)	619, 791, 834
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	9 cut(s)	133, 169, 263, 266, 329, 442, 460, 520, 769
PleI	GAGTC	1 cut(s)	656
PmaCI	CACGTG	1 cut(s)	479
PmlI	CACGTG	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	656
Ppu21I	YACGTR	1 cut(s)	479
Psp124BI	GAGCTC	2 cut(s)	606, 613
Psp1406I	AACGTT	1 cut(s)	426
PspCI	CACGTG	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	4 cut(s)	178, 366, 540, 687
PspPI	GGNCC	2 cut(s)	112, 365
PsrI	GAACNNNNNNTAC	2 cut(s)	16, 48
PsuI	RGATCY	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	152
PteI	GCGCGC	2 cut(s)	461, 463
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	505, 677
RsaNI	GTAC	2 cut(s)	504, 676
SacI	GAGCTC	2 cut(s)	606, 613
SalI	GTCGAC	1 cut(s)	824
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	9 cut(s)	132, 168, 262, 265, 328, 441, 459, 519, 768
Sau3AI	GATC	2 cut(s)	37, 847
Sau96I	GGNCC	2 cut(s)	112, 365
SchI	GAGTC	1 cut(s)	657
SduI	GDGCHC	2 cut(s)	606, 613
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	1 cut(s)	365
Sse9I	AATT	3 cut(s)	209, 679, 724
SsiI	CCGC	7 cut(s)	29, 262, 432, 459, 542, 761, 767
SspMI	CTAG	1 cut(s)	750
SstI	GAGCTC	2 cut(s)	606, 613
StyI	CCWWGG	3 cut(s)	8, 92, 468
TaaI	ACNGT	4 cut(s)	301, 830, 841, 854
TaiI	ACGT	4 cut(s)	273, 314, 429, 481
TaqI	TCGA	5 cut(s)	291, 333, 560, 622, 825
TasI	AATT	3 cut(s)	209, 679, 724
TauI	GCSGC	3 cut(s)	264, 461, 770
TfiI	GAWTC	3 cut(s)	619, 791, 834
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	811
TseI	GCWGC	6 cut(s)	131, 167, 264, 327, 440, 518
TspRI	CASTG	1 cut(s)	811
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	724
XceI	RCATGY	2 cut(s)	569, 758
XmiI	GTMKAC	1 cut(s)	825
XspI	CTAG	1 cut(s)	750
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.