Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Forward (+)

17730853 .. 17731730

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCTAAGCCAAGCTTGGAGGGCAAGGTGGCCCTCATCACCGGTGCAGCTGGTGGCATTGGTGAGGAAGCAGCAAGACTTTTCGCAGCGAATGGAGCTTTCGTTGTCGTAGCTGATATTCAAGACGAATTGGGTCTTCAAGTTGTGGCCTCAATAGCCTCGGAAAGAGTCTCATACTTCCACTGCGACGTCAGAGACGAAAACCAAGTTGAACAAACAGTAAGTTACACATTGGAAAAATACGGCAGCCTAGATATTTTGTTCAGCAATGCAGGCATTATGGGTCCAATGACTGGCATTTTAGACCTCGACATCCAAGGTTTCGACAACACAATGATCACAAATGTCCGCGGAGTTGCAGCGACAATCAAGCACGCCACGCGTGCCATGGTGGCTAGAAAAATCCGCGGTTCAATTATATGCACTACAAGCGTTGCAGGTTCACTTGGAGGTACAGCTCCACATGCTTATACAACATCAAAACATGCCTTAATCGGGTTGGTGAGATCGGCTTGCAGTGAGCTTGGTGCTTATGGGATTCGAGTAAATTGCATTTCCCCATTTGGTGTAGCAACCCCTCTTTCGTGTAAGGCTTATAACTTGGAGCCGAATGAGGTCGAAGCCAACAGCTGTGCCATTGCAAACTTGAAGGGGACTGTGTTGAAGGCTAGGCATGTCGCAGAGGCAGCTATGTTCCTTGCTTCAGATGAATCGGGTTACGTTAGCGGACACAACTTAGTCGTTGATGGAGGCTTCTCGGTGGTTGATCACAGTTTTTCACCGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

263

Amino Acids

27.34

Weight (kDa)

5.62

Isoelectric Point (pI)

23.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 195	2e-48	short chain dehydrogenase
KR	PF08659	11 - 172	1.4e-08	KR domain
adh_short_C2	PF13561	15 - 253	7.3e-62	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccII	CGCG	3 cut(s)	351, 382, 408
AciI	CCGC	5 cut(s)	349, 351, 406, 408, 726
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	293, 495
AflIII	ACRYGT	1 cut(s)	380
AgeI	ACCGGT	1 cut(s)	41
AgsI	TTSAA	6 cut(s)	122, 140, 212, 414, 649, 664
AluBI	AGCT	8 cut(s)	15, 50, 98, 113, 458, 523, 630, 689
AluI	AGCT	8 cut(s)	15, 50, 98, 113, 458, 523, 630, 689
Alw26I	GTCTC	2 cut(s)	175, 189
AoxI	GGCC	2 cut(s)	30, 147
ApeKI	GCWGC	6 cut(s)	47, 71, 86, 246, 359, 686
AsiGI	ACCGGT	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	31, 284
AsuHPI	GGTGA	4 cut(s)	31, 74, 514, 771
AvaII	GGWCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	6 cut(s)	59, 83, 98, 258, 371, 698
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BclI	TGATCA	2 cut(s)	336, 766
BcoDI	GTCTC	2 cut(s)	175, 189
BfaI	CTAG	3 cut(s)	251, 396, 669
BfuAI	ACCTGC	1 cut(s)	428
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
BlsI	GCNGC	6 cut(s)	49, 73, 88, 248, 361, 688
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	31, 284
BmiI	GGNNCC	2 cut(s)	285, 606
BpiI	GAAGAC	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	5 cut(s)	159, 316, 349, 387, 406
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 495
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	2 cut(s)	274, 636
BseDI	CCNNGG	5 cut(s)	159, 316, 349, 387, 406
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	293, 495
BseMI	GCAATG	2 cut(s)	274, 636
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	6 cut(s)	59, 83, 98, 258, 371, 698
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	3 cut(s)	351, 382, 408
BshFI	GGCC	2 cut(s)	32, 149
BshTI	ACCGGT	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	293, 495
BsmAI	GTCTC	2 cut(s)	175, 189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	667
BsnI	GGCC	2 cut(s)	32, 149
Bsp143I	GATC	3 cut(s)	336, 506, 766
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	5 cut(s)	349, 351, 406, 408, 726
BspANI	GGCC	2 cut(s)	32, 149
BspFNI	CGCG	3 cut(s)	351, 382, 408
BspLI	GGNNCC	2 cut(s)	285, 606
BspMI	ACCTGC	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	274, 636
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	5 cut(s)	159, 316, 349, 387, 406
BssMI	GATC	3 cut(s)	336, 506, 766
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	316, 387
Bst4CI	ACNGT	3 cut(s)	220, 658, 773
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	4 cut(s)	274, 375, 384, 514
BstDEI	CTNAG	2 cut(s)	6, 736
BstDSI	CCRYGG	3 cut(s)	349, 387, 406
BstF5I	GGATG	1 cut(s)	312
BstFNI	CGCG	3 cut(s)	351, 382, 408
BstKTI	GATC	3 cut(s)	339, 509, 769
BstMAI	GTCTC	2 cut(s)	175, 189
BstMBI	GATC	3 cut(s)	336, 506, 766
BstNSI	RCATGY	3 cut(s)	467, 488, 677
BstUI	CGCG	3 cut(s)	351, 382, 408
BstV1I	GCAGC	6 cut(s)	59, 83, 98, 258, 371, 698
BstV2I	GAAGAC	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	32, 149
BtgI	CCRYGG	3 cut(s)	349, 387, 406
BtsCI	GGATG	1 cut(s)	312
BtsI	GCAGTG	2 cut(s)	181, 523
BtsIMutI	CAGTG	2 cut(s)	181, 523
BveI	ACCTGC	1 cut(s)	428
Cac8I	GCNNGC	4 cut(s)	274, 375, 384, 514
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	31, 284
Cfr42I	CCGCGG	2 cut(s)	352, 409
Csp6I	GTAC	1 cut(s)	453
CspAI	ACCGGT	1 cut(s)	41
CviAII	CATG	4 cut(s)	388, 464, 485, 674
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	2 cut(s)	6, 736
DpnI	GATC	3 cut(s)	338, 508, 768
DpnII	GATC	3 cut(s)	336, 506, 766
Eco130I	CCWWGG	2 cut(s)	316, 387
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	687
EcoT14I	CCWWGG	2 cut(s)	316, 387
ErhI	CCWWGG	2 cut(s)	316, 387
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	4 cut(s)	391, 467, 488, 677
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	4 cut(s)	387, 463, 484, 673
FbaI	TGATCA	2 cut(s)	336, 766
Fnu4HI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
FspBI	CTAG	3 cut(s)	251, 396, 669
GluI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
HaeIII	GGCC	2 cut(s)	32, 149
HapII	CCGG	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	391, 467, 488, 677
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	3 cut(s)	168, 538, 710
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	4 cut(s)	31, 74, 514, 771
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	3 cut(s)	163, 194, 706
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	643, 658
HpyCH4III	ACNGT	3 cut(s)	220, 658, 773
HpyCH4IV	ACGT	2 cut(s)	189, 720
HpyCH4V	TGCA	8 cut(s)	47, 272, 359, 423, 437, 516, 552, 641
HpyF3I	CTNAG	2 cut(s)	6, 736
HpySE526I	ACGT	2 cut(s)	189, 720
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	391, 467, 488, 677
Ksp22I	TGATCA	2 cut(s)	336, 766
KspI	CCGCGG	2 cut(s)	352, 409
Kzo9I	GATC	3 cut(s)	336, 506, 766
LmnI	GCTCC	3 cut(s)	95, 463, 604
LpnPI	CCDG	5 cut(s)	36, 55, 258, 279, 423
Lsp1109I	GCAGC	6 cut(s)	59, 83, 98, 258, 371, 698
MaeI	CTAG	3 cut(s)	251, 396, 669
MaeII	ACGT	2 cut(s)	189, 720
MaeIII	GTNAC	2 cut(s)	224, 716
MalI	GATC	3 cut(s)	338, 508, 768
MboI	GATC	3 cut(s)	336, 506, 766
MboII	GAAGA	1 cut(s)	128
MluCI	AATT	3 cut(s)	128, 414, 547
MluI	ACGCGT	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	491
MspA1I	CMGCKG	4 cut(s)	50, 351, 408, 630
MspI	CCGG	1 cut(s)	42
MvnI	CGCG	3 cut(s)	351, 382, 408
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	3 cut(s)	336, 506, 766
NlaIII	CATG	4 cut(s)	391, 467, 488, 677
NlaIV	GGNNCC	2 cut(s)	285, 606
NspI	RCATGY	3 cut(s)	467, 488, 677
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	538, 710
PflMI	CCANNNNNTGG	1 cut(s)	293
PinAI	ACCGGT	1 cut(s)	41
PkrI	GCNGC	6 cut(s)	49, 73, 88, 248, 361, 688
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	285, 606
PspPI	GGNCC	2 cut(s)	31, 284
PvuII	CAGCTG	2 cut(s)	50, 630
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SacII	CCGCGG	2 cut(s)	352, 409
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	6 cut(s)	48, 72, 87, 247, 360, 687
Sau3AI	GATC	3 cut(s)	336, 506, 766
Sau96I	GGNCC	2 cut(s)	31, 284
SchI	GAGTC	1 cut(s)	177
Sfr303I	CCGCGG	2 cut(s)	352, 409
SgrAI	CRCCGGYG	1 cut(s)	41
SgrBI	CCGCGG	2 cut(s)	352, 409
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	3 cut(s)	128, 414, 547
SsiI	CCGC	5 cut(s)	349, 351, 406, 408, 726
SspMI	CTAG	3 cut(s)	251, 396, 669
StyI	CCWWGG	2 cut(s)	316, 387
TaaI	ACNGT	3 cut(s)	220, 658, 773
TaiI	ACGT	2 cut(s)	192, 723
TaqI	TCGA	4 cut(s)	309, 324, 541, 618
TasI	AATT	3 cut(s)	128, 414, 547
TfiI	GAWTC	2 cut(s)	538, 710
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	2 cut(s)	188, 523
TseI	GCWGC	6 cut(s)	47, 71, 86, 246, 359, 686
TspDTI	ATGAA	1 cut(s)	723
TspRI	CASTG	2 cut(s)	188, 523
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	3 cut(s)	467, 488, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	3 cut(s)	251, 396, 669
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.