Rorug07G0192200

Short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003831
Physical Location & Seq
Forward (+)
16361928 .. 16362189
262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0192200.1

Sequence Viewer

Length: 222 bp
ATGAGGAGATACTATCCAAAACCATCCAACCGCCATTGTGTGGCAATTGCCTCCCAAAACTCTTCTGCTAGGGGTTTTATCATTCGAGACCTCAATGGTAACCCTCTTGTTGCAGCTAGTAAAAGATTGGGGAATACAATTGTACCAGTGGCAGAAGCAATAGCTCTTCGTGATGGCCTTATCAGTGCTCAGCAAAAACGCTATCTCAATGTCCAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

73

Amino Acids

8.05

Weight (kDa)

10.94

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 18 - 72 8.6e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AciI CCGC 1 cut(s) 31
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 40
AluBI AGCT 2 cut(s) 116, 164
AluI AGCT 2 cut(s) 116, 164
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 81
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 126, 159
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 125
BccI CCATC 2 cut(s) 31, 167
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 69, 117
BisI GCNGC 1 cut(s) 114
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 115
Bpu1102I GCTNAGC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 190
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 1 cut(s) 31
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 146
Bst6I CTCTTC 2 cut(s) 67, 171
BstDEI CTNAG 1 cut(s) 189
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 2 cut(s) 153, 190
Csp6I GTAC 1 cut(s) 143
CviJI RGCY 3 cut(s) 116, 164, 177
CviKI_1 RGCY 3 cut(s) 116, 164, 177
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 67, 171
EarI CTCTTC 2 cut(s) 67, 171
Eco31I GGTCTC 1 cut(s) 81
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
FaiI YATR 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 69, 117
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 86, 170
HpyCH4V TGCA 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 189
LguI GCTCTTC 1 cut(s) 171
LpnPI CCDG 1 cut(s) 159
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 2 cut(s) 69, 117
MaeIII GTNAC 1 cut(s) 98
MboII GAAGA 2 cut(s) 54, 158
MfeI CAATTG 2 cut(s) 45, 138
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 45, 138
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 3 cut(s) 61, 101, 114
MunI CAATTG 2 cut(s) 45, 138
PciSI GCTCTTC 1 cut(s) 171
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 1 cut(s) 115
PspEI GGTNACC 1 cut(s) 98
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 171
SatI GCNGC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 190
SetI ASST 3 cut(s) 93, 118, 166
SgeI CNNG 6 cut(s) 81, 98, 119, 129, 158, 182
Sse9I AATT 2 cut(s) 45, 138
SsiI CCGC 1 cut(s) 31
SspMI CTAG 2 cut(s) 69, 117
TaqI TCGA 1 cut(s) 85
TasI AATT 2 cut(s) 45, 138
TscAI CASTG 2 cut(s) 153, 190
TseI GCWGC 1 cut(s) 113
TspRI CASTG 2 cut(s) 153, 190
Van91I CCANNNNNTGG 1 cut(s) 40
XspI CTAG 2 cut(s) 69, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.