Tubby-like F-box protein 3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Tub | PF01167 | 113 - 402 | 4.2e-106 | Tub family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1081 |
| AccB1I | GGYRCC | 1 cut(s) | 996 |
| AccIII | TCCGGA | 1 cut(s) | 169 |
| AciI | CCGC | 1 cut(s) | 391 |
| AclWI | GGATC | 2 cut(s) | 84, 367 |
| AcoI | YGGCCR | 1 cut(s) | 221 |
| AcsI | RAATTY | 1 cut(s) | 684 |
| AcuI | CTGAAG | 1 cut(s) | 859 |
| AfaI | GTAC | 1 cut(s) | 1151 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 876, 1067 |
| AflIII | ACRYGT | 1 cut(s) | 103 |
| AgsI | TTSAA | 7 cut(s) | 10, 142, 371, 441, 648, 667, 1009 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 947 |
| AjnI | CCWGG | 4 cut(s) | 92, 619, 802, 1167 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 351, 383 |
| Alw21I | GWGCWC | 2 cut(s) | 177, 1089 |
| Alw26I | GTCTC | 4 cut(s) | 20, 102, 535, 908 |
| AlwI | GGATC | 2 cut(s) | 84, 367 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 267, 1082 |
| Ama87I | CYCGRG | 3 cut(s) | 419, 534, 679 |
| Aor13HI | TCCGGA | 1 cut(s) | 169 |
| AoxI | GGCC | 3 cut(s) | 221, 485, 1170 |
| ApeKI | GCWGC | 6 cut(s) | 150, 393, 434, 467, 926, 1055 |
| ApoI | RAATTY | 1 cut(s) | 684 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 276, 308 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 643 |
| AspLEI | GCGC | 2 cut(s) | 251, 967 |
| AspS9I | GGNCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| AsuC2I | CCSGG | 1 cut(s) | 348 |
| AsuHPI | GGTGA | 1 cut(s) | 1168 |
| AvaI | CYCGRG | 3 cut(s) | 419, 534, 679 |
| AvaII | GGWCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 108, 141 |
| BanI | GGYRCC | 1 cut(s) | 996 |
| BanII | GRGCYC | 2 cut(s) | 177, 680 |
| BbsI | GAAGAC | 1 cut(s) | 219 |
| Bbv12I | GWGCWC | 2 cut(s) | 177, 1089 |
| BbvCI | CCTCAGC | 1 cut(s) | 1187 |
| BbvI | GCAGC | 6 cut(s) | 137, 405, 446, 454, 913, 1042 |
| BccI | CCATC | 5 cut(s) | 443, 697, 788, 925, 966 |
| BceAI | ACGGC | 1 cut(s) | 208 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 742, 776 |
| BciT130I | CCWGG | 4 cut(s) | 94, 621, 804, 1169 |
| BciVI | GTATCC | 1 cut(s) | 109 |
| BcnI | CCSGG | 1 cut(s) | 348 |
| BcoDI | GTCTC | 4 cut(s) | 20, 102, 535, 908 |
| BfaI | CTAG | 4 cut(s) | 159, 228, 312, 354 |
| BfmI | CTRYAG | 4 cut(s) | 259, 705, 795, 1074 |
| BfoI | RGCGCY | 1 cut(s) | 968 |
| BfuAI | ACCTGC | 1 cut(s) | 1081 |
| BfuI | GTATCC | 1 cut(s) | 109 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 973, 1169 |
| BglII | AGATCT | 1 cut(s) | 566 |
| BisI | GCNGC | 6 cut(s) | 151, 394, 435, 468, 927, 1056 |
| BlpI | GCTNAGC | 1 cut(s) | 606 |
| BlsI | GCNGC | 6 cut(s) | 152, 395, 436, 469, 928, 1057 |
| Bme1390I | CCNGG | 5 cut(s) | 94, 348, 621, 804, 1169 |
| Bme18I | GGWCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 947 |
| BmeT110I | CYCGRG | 3 cut(s) | 419, 534, 679 |
| BmgT120I | GGNCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| BmiI | GGNNCC | 4 cut(s) | 351, 583, 742, 998 |
| BmrFI | CCNGG | 5 cut(s) | 94, 348, 621, 804, 1169 |
| BmsI | GCATC | 4 cut(s) | 124, 750, 766, 797 |
| BpiI | GAAGAC | 1 cut(s) | 219 |
| BpmI | CTGGAG | 3 cut(s) | 825, 971, 1088 |
| Bpu10I | CCTNAGC | 3 cut(s) | 303, 1083, 1187 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 606 |
| BpuMI | CCSGG | 1 cut(s) | 348 |
| BsaI | GGTCTC | 1 cut(s) | 102 |
| BsaJI | CCNNGG | 2 cut(s) | 418, 752 |
| BsaWI | WCCGGW | 1 cut(s) | 169 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 494, 524 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 876, 1067 |
| Bse1I | ACTGG | 3 cut(s) | 272, 988, 1105 |
| BseAI | TCCGGA | 1 cut(s) | 169 |
| BseBI | CCWGG | 4 cut(s) | 94, 621, 804, 1169 |
| BseDI | CCNNGG | 2 cut(s) | 418, 752 |
| BseGI | GGATG | 3 cut(s) | 765, 780, 781 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 876, 1067 |
| BseNI | ACTGG | 3 cut(s) | 272, 988, 1105 |
| BseRI | GAGGAG | 2 cut(s) | 48, 769 |
| BseXI | GCAGC | 6 cut(s) | 137, 405, 446, 454, 913, 1042 |
| BseYI | CCCAGC | 1 cut(s) | 153 |
| BsgI | GTGCAG | 1 cut(s) | 915 |
| BshFI | GGCC | 3 cut(s) | 223, 487, 1172 |
| BshNI | GGYRCC | 1 cut(s) | 996 |
| BsiHKAI | GWGCWC | 2 cut(s) | 177, 1089 |
| BsiHKCI | CYCGRG | 3 cut(s) | 419, 534, 679 |
| BsiSI | CCGG | 2 cut(s) | 170, 347 |
| BslFI | GGGAC | 1 cut(s) | 595 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 876, 1067 |
| BsmAI | GTCTC | 4 cut(s) | 20, 102, 535, 908 |
| BsmFI | GGGAC | 1 cut(s) | 595 |
| BsnI | GGCC | 3 cut(s) | 223, 487, 1172 |
| Bso31I | GGTCTC | 1 cut(s) | 102 |
| BsoBI | CYCGRG | 3 cut(s) | 419, 534, 679 |
| Bsp1286I | GDGCHC | 3 cut(s) | 177, 680, 1089 |
| Bsp13I | TCCGGA | 1 cut(s) | 169 |
| Bsp143I | GATC | 4 cut(s) | 89, 288, 359, 566 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 606 |
| BspACI | CCGC | 1 cut(s) | 391 |
| BspANI | GGCC | 3 cut(s) | 223, 487, 1172 |
| BspEI | TCCGGA | 1 cut(s) | 169 |
| BspLI | GGNNCC | 4 cut(s) | 351, 583, 742, 998 |
| BspMAI | CTGCAG | 2 cut(s) | 263, 1078 |
| BspMI | ACCTGC | 1 cut(s) | 1081 |
| BspPI | GGATC | 2 cut(s) | 84, 367 |
| BspT107I | GGYRCC | 1 cut(s) | 996 |
| BspTNI | GGTCTC | 1 cut(s) | 102 |
| BsrI | ACTGG | 3 cut(s) | 272, 988, 1105 |
| BssECI | CCNNGG | 2 cut(s) | 418, 752 |
| BssMI | GATC | 4 cut(s) | 89, 288, 359, 566 |
| Bst2UI | CCWGG | 4 cut(s) | 94, 621, 804, 1169 |
| Bst4CI | ACNGT | 2 cut(s) | 595, 1024 |
| BstEII | GGTNACC | 1 cut(s) | 631 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 874 |
| BstF5I | GGATG | 3 cut(s) | 765, 780, 781 |
| BstH2I | RGCGCY | 1 cut(s) | 968 |
| BstHHI | GCGC | 2 cut(s) | 251, 967 |
| BstKTI | GATC | 4 cut(s) | 92, 291, 362, 569 |
| BstMAI | GTCTC | 4 cut(s) | 20, 102, 535, 908 |
| BstMBI | GATC | 4 cut(s) | 89, 288, 359, 566 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 172, 785, 973, 982, 1169 |
| BstNI | CCWGG | 4 cut(s) | 94, 621, 804, 1169 |
| BstNSI | RCATGY | 1 cut(s) | 1215 |
| BstPI | GGTNACC | 1 cut(s) | 631 |
| BstSCI | CCNGG | 5 cut(s) | 92, 346, 619, 802, 1167 |
| BstSFI | CTRYAG | 4 cut(s) | 259, 705, 795, 1074 |
| BstV1I | GCAGC | 6 cut(s) | 137, 405, 446, 454, 913, 1042 |
| BstV2I | GAAGAC | 1 cut(s) | 219 |
| BstX2I | RGATCY | 2 cut(s) | 89, 566 |
| BstYI | RGATCY | 2 cut(s) | 89, 566 |
| BsuI | GTATCC | 1 cut(s) | 109 |
| BsuRI | GGCC | 3 cut(s) | 223, 487, 1172 |
| BtgZI | GCGATG | 1 cut(s) | 537 |
| BtsCI | GGATG | 3 cut(s) | 765, 780, 781 |
| BtsI | GCAGTG | 1 cut(s) | 770 |
| BtsIMutI | CAGTG | 4 cut(s) | 495, 591, 770, 995 |
| BveI | ACCTGC | 1 cut(s) | 1081 |
| CaiI | CAGNNNCTG | 2 cut(s) | 267, 1082 |
| CfoI | GCGC | 2 cut(s) | 251, 967 |
| Cfr13I | GGNCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| CseI | GACGC | 1 cut(s) | 611 |
| Csp6I | GTAC | 1 cut(s) | 1150 |
| CviAII | CATG | 3 cut(s) | 28, 772, 1212 |
| CviQI | GTAC | 1 cut(s) | 1150 |
| DpnI | GATC | 4 cut(s) | 91, 290, 361, 568 |
| DpnII | GATC | 4 cut(s) | 89, 288, 359, 566 |
| DriI | GACNNNNNGTC | 1 cut(s) | 947 |
| EaeI | YGGCCR | 1 cut(s) | 221 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 947 |
| Ecl136II | GAGCTC | 1 cut(s) | 175 |
| Eco147I | AGGCCT | 1 cut(s) | 1172 |
| Eco24I | GRGCYC | 2 cut(s) | 177, 680 |
| Eco31I | GGTCTC | 1 cut(s) | 102 |
| Eco47I | GGWCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| Eco53kI | GAGCTC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 859 |
| Eco88I | CYCGRG | 3 cut(s) | 419, 534, 679 |
| Eco91I | GGTNACC | 1 cut(s) | 631 |
| EcoICRI | GAGCTC | 1 cut(s) | 175 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 874 |
| EcoO109I | RGGNCCY | 2 cut(s) | 350, 1079 |
| EcoO65I | GGTNACC | 1 cut(s) | 631 |
| EcoRI | GAATTC | 1 cut(s) | 684 |
| EcoRII | CCWGG | 4 cut(s) | 92, 619, 802, 1167 |
| EcoT38I | GRGCYC | 2 cut(s) | 177, 680 |
| FaeI | CATG | 3 cut(s) | 31, 775, 1215 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 930, 962 |
| FaqI | GGGAC | 1 cut(s) | 595 |
| FatI | CATG | 3 cut(s) | 27, 771, 1211 |
| FauNDI | CATATG | 1 cut(s) | 721 |
| Fnu4HI | GCNGC | 6 cut(s) | 151, 394, 435, 468, 927, 1056 |
| FokI | GGATG | 3 cut(s) | 767, 772, 788 |
| FriOI | GRGCYC | 2 cut(s) | 177, 680 |
| Fsp4HI | GCNGC | 6 cut(s) | 151, 394, 435, 468, 927, 1056 |
| FspBI | CTAG | 4 cut(s) | 159, 228, 312, 354 |
| GlaI | GCGC | 2 cut(s) | 250, 966 |
| GluI | GCNGC | 6 cut(s) | 151, 394, 435, 468, 927, 1056 |
| GsaI | CCCAGC | 1 cut(s) | 157 |
| GsuI | CTGGAG | 3 cut(s) | 825, 971, 1088 |
| HaeII | RGCGCY | 1 cut(s) | 968 |
| HaeIII | GGCC | 3 cut(s) | 223, 487, 1172 |
| HapII | CCGG | 2 cut(s) | 170, 347 |
| HgaI | GACGC | 1 cut(s) | 611 |
| HhaI | GCGC | 2 cut(s) | 251, 967 |
| Hin1II | CATG | 3 cut(s) | 31, 775, 1215 |
| Hin6I | GCGC | 2 cut(s) | 249, 965 |
| HinP1I | GCGC | 2 cut(s) | 249, 965 |
| HindIII | AAGCTT | 1 cut(s) | 560 |
| HinfI | GANTC | 7 cut(s) | 13, 63, 75, 616, 901, 1017, 1099 |
| HpaII | CCGG | 2 cut(s) | 170, 347 |
| HphI | GGTGA | 1 cut(s) | 1168 |
| Hpy166II | GTNNAC | 2 cut(s) | 591, 1134 |
| Hpy188I | TCNGA | 8 cut(s) | 74, 211, 296, 483, 557, 825, 933, 1121 |
| Hpy8I | GTNNAC | 2 cut(s) | 591, 1134 |
| Hpy99I | CGWCG | 1 cut(s) | 616 |
| HpyAV | CCTTC | 8 cut(s) | 16, 470, 880, 918, 928, 932, 1174, 1183 |
| HpyCH4III | ACNGT | 2 cut(s) | 595, 1024 |
| HpyCH4IV | ACGT | 3 cut(s) | 103, 732, 1095 |
| HpyCH4V | TGCA | 6 cut(s) | 261, 495, 763, 788, 896, 1076 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 172, 785, 973, 982, 1169 |
| HpySE526I | ACGT | 3 cut(s) | 103, 732, 1095 |
| Hsp92II | CATG | 3 cut(s) | 31, 775, 1215 |
| HspAI | GCGC | 2 cut(s) | 249, 965 |
| Kpn2I | TCCGGA | 1 cut(s) | 169 |
| Kzo9I | GATC | 4 cut(s) | 89, 288, 359, 566 |
| LmnI | GCTCC | 5 cut(s) | 172, 180, 820, 990, 1063 |
| Lsp1109I | GCAGC | 6 cut(s) | 137, 405, 446, 454, 913, 1042 |
| LweI | GCATC | 4 cut(s) | 124, 750, 766, 797 |
| MaeI | CTAG | 4 cut(s) | 159, 228, 312, 354 |
| MaeII | ACGT | 3 cut(s) | 103, 732, 1095 |
| MaeIII | GTNAC | 2 cut(s) | 631, 1018 |
| MalI | GATC | 4 cut(s) | 91, 290, 361, 568 |
| MboI | GATC | 4 cut(s) | 89, 288, 359, 566 |
| MboII | GAAGA | 2 cut(s) | 224, 865 |
| MflI | RGATCY | 2 cut(s) | 89, 566 |
| MhlI | GDGCHC | 3 cut(s) | 177, 680, 1089 |
| MluCI | AATT | 2 cut(s) | 684, 888 |
| MlyI | GAGTC | 3 cut(s) | 22, 910, 1026 |
| MmeI | TCCRAC | 2 cut(s) | 842, 1099 |
| MroI | TCCGGA | 1 cut(s) | 169 |
| MroXI | GAANNNNTTC | 1 cut(s) | 643 |
| MseI | TTAA | 3 cut(s) | 425, 515, 729 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1216 |
| MspA1I | CMGCKG | 2 cut(s) | 794, 1048 |
| MspI | CCGG | 2 cut(s) | 170, 347 |
| MspR9I | CCNGG | 5 cut(s) | 94, 348, 621, 804, 1169 |
| MvaI | CCWGG | 4 cut(s) | 94, 621, 804, 1169 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 172, 785, 973, 982, 1169 |
| NciI | CCSGG | 1 cut(s) | 348 |
| NdeI | CATATG | 1 cut(s) | 721 |
| NdeII | GATC | 4 cut(s) | 89, 288, 359, 566 |
| NlaIII | CATG | 3 cut(s) | 31, 775, 1215 |
| NlaIV | GGNNCC | 4 cut(s) | 351, 583, 742, 998 |
| NmuCI | GTSAC | 1 cut(s) | 1018 |
| NspI | RCATGY | 1 cut(s) | 1215 |
| PaeR7I | CTCGAG | 1 cut(s) | 534 |
| PceI | AGGCCT | 1 cut(s) | 1172 |
| PdmI | GAANNNNTTC | 1 cut(s) | 643 |
| PfeI | GAWTC | 4 cut(s) | 63, 75, 616, 1099 |
| PfoI | TCCNGGA | 1 cut(s) | 619 |
| PkrI | GCNGC | 6 cut(s) | 152, 395, 436, 469, 928, 1057 |
| PleI | GAGTC | 3 cut(s) | 21, 909, 1025 |
| PpsI | GAGTC | 3 cut(s) | 21, 909, 1025 |
| PpuMI | RGGWCCY | 2 cut(s) | 350, 1079 |
| Psp124BI | GAGCTC | 1 cut(s) | 177 |
| Psp5II | RGGWCCY | 2 cut(s) | 350, 1079 |
| Psp6I | CCWGG | 4 cut(s) | 92, 619, 802, 1167 |
| PspEI | GGTNACC | 1 cut(s) | 631 |
| PspFI | CCCAGC | 1 cut(s) | 153 |
| PspGI | CCWGG | 4 cut(s) | 92, 619, 802, 1167 |
| PspN4I | GGNNCC | 4 cut(s) | 351, 583, 742, 998 |
| PspPI | GGNCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| PspPPI | RGGWCCY | 2 cut(s) | 350, 1079 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 616, 648 |
| PstI | CTGCAG | 2 cut(s) | 263, 1078 |
| PstNI | CAGNNNCTG | 2 cut(s) | 267, 1082 |
| PsuI | RGATCY | 2 cut(s) | 89, 566 |
| PvuII | CAGCTG | 2 cut(s) | 794, 1048 |
| RsaI | GTAC | 1 cut(s) | 1151 |
| RsaNI | GTAC | 1 cut(s) | 1150 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1216 |
| SacI | GAGCTC | 1 cut(s) | 177 |
| SaqAI | TTAA | 3 cut(s) | 425, 515, 729 |
| SatI | GCNGC | 6 cut(s) | 151, 394, 435, 468, 927, 1056 |
| Sau3AI | GATC | 4 cut(s) | 89, 288, 359, 566 |
| Sau96I | GGNCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| SbfI | CCTGCAGG | 1 cut(s) | 1078 |
| SchI | GAGTC | 3 cut(s) | 22, 910, 1026 |
| ScrFI | CCNGG | 5 cut(s) | 94, 348, 621, 804, 1169 |
| SdaI | CCTGCAGG | 1 cut(s) | 1078 |
| SduI | GDGCHC | 3 cut(s) | 177, 680, 1089 |
| SfaNI | GCATC | 4 cut(s) | 124, 750, 766, 797 |
| SfcI | CTRYAG | 4 cut(s) | 259, 705, 795, 1074 |
| Sfr274I | CTCGAG | 1 cut(s) | 534 |
| SinI | GGWCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| SlaI | CTCGAG | 1 cut(s) | 534 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1216 |
| SmlI | CTYRAG | 1 cut(s) | 534 |
| SmoI | CTYRAG | 1 cut(s) | 534 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1078 |
| Sse9I | AATT | 2 cut(s) | 684, 888 |
| SseBI | AGGCCT | 1 cut(s) | 1172 |
| SsiI | CCGC | 1 cut(s) | 391 |
| SspMI | CTAG | 4 cut(s) | 159, 228, 312, 354 |
| SstI | GAGCTC | 1 cut(s) | 177 |
| StuI | AGGCCT | 1 cut(s) | 1172 |
| StyD4I | CCNGG | 5 cut(s) | 92, 346, 619, 802, 1167 |
| TaaI | ACNGT | 2 cut(s) | 595, 1024 |
| TaiI | ACGT | 3 cut(s) | 106, 735, 1098 |
| TaqI | TCGA | 4 cut(s) | 66, 535, 881, 1197 |
| TaqII | GACCGA | 1 cut(s) | 766 |
| TasI | AATT | 2 cut(s) | 684, 888 |
| TfiI | GAWTC | 4 cut(s) | 63, 75, 616, 1099 |
| Tru1I | TTAA | 3 cut(s) | 425, 515, 729 |
| Tru9I | TTAA | 3 cut(s) | 425, 515, 729 |
| TscAI | CASTG | 4 cut(s) | 502, 598, 770, 995 |
| TseFI | GTSAC | 1 cut(s) | 1018 |
| TseI | GCWGC | 6 cut(s) | 150, 393, 434, 467, 926, 1055 |
| Tsp45I | GTSAC | 1 cut(s) | 1018 |
| TspGWI | ACGGA | 2 cut(s) | 842, 1021 |
| TspRI | CASTG | 4 cut(s) | 502, 598, 770, 995 |
| VpaK11BI | GGWCC | 6 cut(s) | 350, 582, 749, 914, 1070, 1079 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 874 |
| XapI | RAATTY | 1 cut(s) | 684 |
| XceI | RCATGY | 1 cut(s) | 1215 |
| XhoI | CTCGAG | 1 cut(s) | 534 |
| XmnI | GAANNNNTTC | 1 cut(s) | 643 |
| XspI | CTAG | 4 cut(s) | 159, 228, 312, 354 |