AT2G47900

Tubby-like F-box protein 3

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
19610923 .. 19613325
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47900.3

Sequence Viewer

Length: 1221 bp
ATGTCCTTCAAGAGTCTCATTCAGGACATGAGAGGAGAGCTTGGGAGTATATCCAGAAAGGGATTCGATGTCAGATTCGGGTATGGTAGATCCAGGTCTCAACGTGTTGTTCAGGATACTTCTGTTCCTGTTGATGCTTTCAAGCAGAGCTGCTGGGCTAGTATGCCTCCGGAGCTCCTGAGAGATGTTCTTATGAGGATTGAGCAATCCGAAGACACTTGGCCGTCTAGGAAAAATGTTGTTTCTTGCGCTGGTGTCTGCAGGAACTGGCGAGAAATCGTCAAAGAGATCGTCAGAGTTCCTGAGCTTTCTAGCAAACTCACTTTTCCTATCTCCCTCAAACAGCCGGGTCCTAGAGGATCACTTGTTCAATGCTATATTATGAGAAACCGCAGCAATCAAACCTACTATCTATACCTCGGGTTAAACCAAGCAGCTTCAAATGATGATGGAAAGTTCCTTCTTGCTGCCAAGAGGTTTCGGAGGCCAACTTGCACTGACTACATCATCTCCTTAAACTGCGATGATGTCTCTCGAGGAAGCAATACCTATATCGGAAAGCTTAGATCTAACTTTCTGGGGACCAAGTTCACTGTCTATGACGCTCAGCCGACGAATCCTGGAACTCAGGTTACCAGAACCCGTTCAAGCAGACTTCTCAGTTTGAAACAAGTGAGCCCGAGAATTCCATCTGGCAACTATCCTGTAGCACATATCTCATATGAGCTTAACGTCTTGGGTTCCAGAGGACCGAGGAGGATGCAGTGTGTCATGGATGCCATCCCTGCATCAGCTGTAGAACCTGGAGGAACAGCTCCAACTCAGACGGAACTTGTCCATAGCAATCTTGATAGTTTCCCCTCATTCTCCTTCTTCAGGTCGAAATCAATTCGTGCAGAGAGTCTCCCTTCTGGTCCATCATCTGCTGCTCAGAAGGAAGGACTGCTTGTCCTGAAAAACAAAGCGCCCAGATGGCACGAACAGCTCCAGTGCTGGTGCCTCAACTTCAATGGGAGAGTCACAGTTGCTTCCGTCAAAAACTTTCAGCTGGTAGCTGCTCCTGAGAATGGACCTGCAGGACCTGAGCACGAAAACGTGATTCTCCAGTTTGGAAAAGTCGGAAAAGATGTGTTCACAATGGATTATCAGTACCCTATCTCTGCCTTCCAGGCCTTCACCATTTGCCTCAGCAGTTTCGACACCAAGATAGCATGTGAATGA

Protein Analysis

406

Amino Acids

45.31

Weight (kDa)

9.49

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 113 - 402 4.2e-106 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1081
AccB1I GGYRCC 1 cut(s) 996
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 1 cut(s) 391
AclWI GGATC 2 cut(s) 84, 367
AcoI YGGCCR 1 cut(s) 221
AcsI RAATTY 1 cut(s) 684
AcuI CTGAAG 1 cut(s) 859
AfaI GTAC 1 cut(s) 1151
AfiI CCNNNNNNNGG 2 cut(s) 876, 1067
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 7 cut(s) 10, 142, 371, 441, 648, 667, 1009
AhdI GACNNNNNGTC 1 cut(s) 947
AjnI CCWGG 4 cut(s) 92, 619, 802, 1167
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
Alw21I GWGCWC 2 cut(s) 177, 1089
Alw26I GTCTC 4 cut(s) 20, 102, 535, 908
AlwI GGATC 2 cut(s) 84, 367
AlwNI CAGNNNCTG 2 cut(s) 267, 1082
Ama87I CYCGRG 3 cut(s) 419, 534, 679
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 3 cut(s) 221, 485, 1170
ApeKI GCWGC 6 cut(s) 150, 393, 434, 467, 926, 1055
ApoI RAATTY 1 cut(s) 684
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
Asp700I GAANNNNTTC 1 cut(s) 643
AspLEI GCGC 2 cut(s) 251, 967
AspS9I GGNCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 1168
AvaI CYCGRG 3 cut(s) 419, 534, 679
AvaII GGWCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BanI GGYRCC 1 cut(s) 996
BanII GRGCYC 2 cut(s) 177, 680
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 2 cut(s) 177, 1089
BbvCI CCTCAGC 1 cut(s) 1187
BbvI GCAGC 6 cut(s) 137, 405, 446, 454, 913, 1042
BccI CCATC 5 cut(s) 443, 697, 788, 925, 966
BceAI ACGGC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 742, 776
BciT130I CCWGG 4 cut(s) 94, 621, 804, 1169
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 4 cut(s) 20, 102, 535, 908
BfaI CTAG 4 cut(s) 159, 228, 312, 354
BfmI CTRYAG 4 cut(s) 259, 705, 795, 1074
BfoI RGCGCY 1 cut(s) 968
BfuAI ACCTGC 1 cut(s) 1081
BfuI GTATCC 1 cut(s) 109
BglI GCCNNNNNGGC 2 cut(s) 973, 1169
BglII AGATCT 1 cut(s) 566
BisI GCNGC 6 cut(s) 151, 394, 435, 468, 927, 1056
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 6 cut(s) 152, 395, 436, 469, 928, 1057
Bme1390I CCNGG 5 cut(s) 94, 348, 621, 804, 1169
Bme18I GGWCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
BmeRI GACNNNNNGTC 1 cut(s) 947
BmeT110I CYCGRG 3 cut(s) 419, 534, 679
BmgT120I GGNCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
BmiI GGNNCC 4 cut(s) 351, 583, 742, 998
BmrFI CCNGG 5 cut(s) 94, 348, 621, 804, 1169
BmsI GCATC 4 cut(s) 124, 750, 766, 797
BpiI GAAGAC 1 cut(s) 219
BpmI CTGGAG 3 cut(s) 825, 971, 1088
Bpu10I CCTNAGC 3 cut(s) 303, 1083, 1187
Bpu1102I GCTNAGC 1 cut(s) 606
BpuMI CCSGG 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 418, 752
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 2 cut(s) 876, 1067
Bse1I ACTGG 3 cut(s) 272, 988, 1105
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 4 cut(s) 94, 621, 804, 1169
BseDI CCNNGG 2 cut(s) 418, 752
BseGI GGATG 3 cut(s) 765, 780, 781
BseLI CCNNNNNNNGG 2 cut(s) 876, 1067
BseNI ACTGG 3 cut(s) 272, 988, 1105
BseRI GAGGAG 2 cut(s) 48, 769
BseXI GCAGC 6 cut(s) 137, 405, 446, 454, 913, 1042
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 3 cut(s) 223, 487, 1172
BshNI GGYRCC 1 cut(s) 996
BsiHKAI GWGCWC 2 cut(s) 177, 1089
BsiHKCI CYCGRG 3 cut(s) 419, 534, 679
BsiSI CCGG 2 cut(s) 170, 347
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 2 cut(s) 876, 1067
BsmAI GTCTC 4 cut(s) 20, 102, 535, 908
BsmFI GGGAC 1 cut(s) 595
BsnI GGCC 3 cut(s) 223, 487, 1172
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 3 cut(s) 419, 534, 679
Bsp1286I GDGCHC 3 cut(s) 177, 680, 1089
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 4 cut(s) 89, 288, 359, 566
Bsp1720I GCTNAGC 1 cut(s) 606
BspACI CCGC 1 cut(s) 391
BspANI GGCC 3 cut(s) 223, 487, 1172
BspEI TCCGGA 1 cut(s) 169
BspLI GGNNCC 4 cut(s) 351, 583, 742, 998
BspMAI CTGCAG 2 cut(s) 263, 1078
BspMI ACCTGC 1 cut(s) 1081
BspPI GGATC 2 cut(s) 84, 367
BspT107I GGYRCC 1 cut(s) 996
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 3 cut(s) 272, 988, 1105
BssECI CCNNGG 2 cut(s) 418, 752
BssMI GATC 4 cut(s) 89, 288, 359, 566
Bst2UI CCWGG 4 cut(s) 94, 621, 804, 1169
Bst4CI ACNGT 2 cut(s) 595, 1024
BstEII GGTNACC 1 cut(s) 631
BstENI CCTNNNNNAGG 1 cut(s) 874
BstF5I GGATG 3 cut(s) 765, 780, 781
BstH2I RGCGCY 1 cut(s) 968
BstHHI GCGC 2 cut(s) 251, 967
BstKTI GATC 4 cut(s) 92, 291, 362, 569
BstMAI GTCTC 4 cut(s) 20, 102, 535, 908
BstMBI GATC 4 cut(s) 89, 288, 359, 566
BstMWI GCNNNNNNNGC 5 cut(s) 172, 785, 973, 982, 1169
BstNI CCWGG 4 cut(s) 94, 621, 804, 1169
BstNSI RCATGY 1 cut(s) 1215
BstPI GGTNACC 1 cut(s) 631
BstSCI CCNGG 5 cut(s) 92, 346, 619, 802, 1167
BstSFI CTRYAG 4 cut(s) 259, 705, 795, 1074
BstV1I GCAGC 6 cut(s) 137, 405, 446, 454, 913, 1042
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 2 cut(s) 89, 566
BstYI RGATCY 2 cut(s) 89, 566
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 3 cut(s) 223, 487, 1172
BtgZI GCGATG 1 cut(s) 537
BtsCI GGATG 3 cut(s) 765, 780, 781
BtsI GCAGTG 1 cut(s) 770
BtsIMutI CAGTG 4 cut(s) 495, 591, 770, 995
BveI ACCTGC 1 cut(s) 1081
CaiI CAGNNNCTG 2 cut(s) 267, 1082
CfoI GCGC 2 cut(s) 251, 967
Cfr13I GGNCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
CseI GACGC 1 cut(s) 611
Csp6I GTAC 1 cut(s) 1150
CviAII CATG 3 cut(s) 28, 772, 1212
CviQI GTAC 1 cut(s) 1150
DpnI GATC 4 cut(s) 91, 290, 361, 568
DpnII GATC 4 cut(s) 89, 288, 359, 566
DriI GACNNNNNGTC 1 cut(s) 947
EaeI YGGCCR 1 cut(s) 221
Eam1105I GACNNNNNGTC 1 cut(s) 947
Ecl136II GAGCTC 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 1172
Eco24I GRGCYC 2 cut(s) 177, 680
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 859
Eco88I CYCGRG 3 cut(s) 419, 534, 679
Eco91I GGTNACC 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 874
EcoO109I RGGNCCY 2 cut(s) 350, 1079
EcoO65I GGTNACC 1 cut(s) 631
EcoRI GAATTC 1 cut(s) 684
EcoRII CCWGG 4 cut(s) 92, 619, 802, 1167
EcoT38I GRGCYC 2 cut(s) 177, 680
FaeI CATG 3 cut(s) 31, 775, 1215
FalI AAGNNNNNCTT 2 cut(s) 930, 962
FaqI GGGAC 1 cut(s) 595
FatI CATG 3 cut(s) 27, 771, 1211
FauNDI CATATG 1 cut(s) 721
Fnu4HI GCNGC 6 cut(s) 151, 394, 435, 468, 927, 1056
FokI GGATG 3 cut(s) 767, 772, 788
FriOI GRGCYC 2 cut(s) 177, 680
Fsp4HI GCNGC 6 cut(s) 151, 394, 435, 468, 927, 1056
FspBI CTAG 4 cut(s) 159, 228, 312, 354
GlaI GCGC 2 cut(s) 250, 966
GluI GCNGC 6 cut(s) 151, 394, 435, 468, 927, 1056
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 3 cut(s) 825, 971, 1088
HaeII RGCGCY 1 cut(s) 968
HaeIII GGCC 3 cut(s) 223, 487, 1172
HapII CCGG 2 cut(s) 170, 347
HgaI GACGC 1 cut(s) 611
HhaI GCGC 2 cut(s) 251, 967
Hin1II CATG 3 cut(s) 31, 775, 1215
Hin6I GCGC 2 cut(s) 249, 965
HinP1I GCGC 2 cut(s) 249, 965
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 7 cut(s) 13, 63, 75, 616, 901, 1017, 1099
HpaII CCGG 2 cut(s) 170, 347
HphI GGTGA 1 cut(s) 1168
Hpy166II GTNNAC 2 cut(s) 591, 1134
Hpy188I TCNGA 8 cut(s) 74, 211, 296, 483, 557, 825, 933, 1121
Hpy8I GTNNAC 2 cut(s) 591, 1134
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 8 cut(s) 16, 470, 880, 918, 928, 932, 1174, 1183
HpyCH4III ACNGT 2 cut(s) 595, 1024
HpyCH4IV ACGT 3 cut(s) 103, 732, 1095
HpyCH4V TGCA 6 cut(s) 261, 495, 763, 788, 896, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 785, 973, 982, 1169
HpySE526I ACGT 3 cut(s) 103, 732, 1095
Hsp92II CATG 3 cut(s) 31, 775, 1215
HspAI GCGC 2 cut(s) 249, 965
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 89, 288, 359, 566
LmnI GCTCC 5 cut(s) 172, 180, 820, 990, 1063
Lsp1109I GCAGC 6 cut(s) 137, 405, 446, 454, 913, 1042
LweI GCATC 4 cut(s) 124, 750, 766, 797
MaeI CTAG 4 cut(s) 159, 228, 312, 354
MaeII ACGT 3 cut(s) 103, 732, 1095
MaeIII GTNAC 2 cut(s) 631, 1018
MalI GATC 4 cut(s) 91, 290, 361, 568
MboI GATC 4 cut(s) 89, 288, 359, 566
MboII GAAGA 2 cut(s) 224, 865
MflI RGATCY 2 cut(s) 89, 566
MhlI GDGCHC 3 cut(s) 177, 680, 1089
MluCI AATT 2 cut(s) 684, 888
MlyI GAGTC 3 cut(s) 22, 910, 1026
MmeI TCCRAC 2 cut(s) 842, 1099
MroI TCCGGA 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 643
MseI TTAA 3 cut(s) 425, 515, 729
MslI CAYNNNNRTG 1 cut(s) 1216
MspA1I CMGCKG 2 cut(s) 794, 1048
MspI CCGG 2 cut(s) 170, 347
MspR9I CCNGG 5 cut(s) 94, 348, 621, 804, 1169
MvaI CCWGG 4 cut(s) 94, 621, 804, 1169
MwoI GCNNNNNNNGC 5 cut(s) 172, 785, 973, 982, 1169
NciI CCSGG 1 cut(s) 348
NdeI CATATG 1 cut(s) 721
NdeII GATC 4 cut(s) 89, 288, 359, 566
NlaIII CATG 3 cut(s) 31, 775, 1215
NlaIV GGNNCC 4 cut(s) 351, 583, 742, 998
NmuCI GTSAC 1 cut(s) 1018
NspI RCATGY 1 cut(s) 1215
PaeR7I CTCGAG 1 cut(s) 534
PceI AGGCCT 1 cut(s) 1172
PdmI GAANNNNTTC 1 cut(s) 643
PfeI GAWTC 4 cut(s) 63, 75, 616, 1099
PfoI TCCNGGA 1 cut(s) 619
PkrI GCNGC 6 cut(s) 152, 395, 436, 469, 928, 1057
PleI GAGTC 3 cut(s) 21, 909, 1025
PpsI GAGTC 3 cut(s) 21, 909, 1025
PpuMI RGGWCCY 2 cut(s) 350, 1079
Psp124BI GAGCTC 1 cut(s) 177
Psp5II RGGWCCY 2 cut(s) 350, 1079
Psp6I CCWGG 4 cut(s) 92, 619, 802, 1167
PspEI GGTNACC 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 4 cut(s) 92, 619, 802, 1167
PspN4I GGNNCC 4 cut(s) 351, 583, 742, 998
PspPI GGNCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
PspPPI RGGWCCY 2 cut(s) 350, 1079
PsrI GAACNNNNNNTAC 2 cut(s) 616, 648
PstI CTGCAG 2 cut(s) 263, 1078
PstNI CAGNNNCTG 2 cut(s) 267, 1082
PsuI RGATCY 2 cut(s) 89, 566
PvuII CAGCTG 2 cut(s) 794, 1048
RsaI GTAC 1 cut(s) 1151
RsaNI GTAC 1 cut(s) 1150
RseI CAYNNNNRTG 1 cut(s) 1216
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 425, 515, 729
SatI GCNGC 6 cut(s) 151, 394, 435, 468, 927, 1056
Sau3AI GATC 4 cut(s) 89, 288, 359, 566
Sau96I GGNCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
SbfI CCTGCAGG 1 cut(s) 1078
SchI GAGTC 3 cut(s) 22, 910, 1026
ScrFI CCNGG 5 cut(s) 94, 348, 621, 804, 1169
SdaI CCTGCAGG 1 cut(s) 1078
SduI GDGCHC 3 cut(s) 177, 680, 1089
SfaNI GCATC 4 cut(s) 124, 750, 766, 797
SfcI CTRYAG 4 cut(s) 259, 705, 795, 1074
Sfr274I CTCGAG 1 cut(s) 534
SinI GGWCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
SlaI CTCGAG 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 1216
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
Sse8387I CCTGCAGG 1 cut(s) 1078
Sse9I AATT 2 cut(s) 684, 888
SseBI AGGCCT 1 cut(s) 1172
SsiI CCGC 1 cut(s) 391
SspMI CTAG 4 cut(s) 159, 228, 312, 354
SstI GAGCTC 1 cut(s) 177
StuI AGGCCT 1 cut(s) 1172
StyD4I CCNGG 5 cut(s) 92, 346, 619, 802, 1167
TaaI ACNGT 2 cut(s) 595, 1024
TaiI ACGT 3 cut(s) 106, 735, 1098
TaqI TCGA 4 cut(s) 66, 535, 881, 1197
TaqII GACCGA 1 cut(s) 766
TasI AATT 2 cut(s) 684, 888
TfiI GAWTC 4 cut(s) 63, 75, 616, 1099
Tru1I TTAA 3 cut(s) 425, 515, 729
Tru9I TTAA 3 cut(s) 425, 515, 729
TscAI CASTG 4 cut(s) 502, 598, 770, 995
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 6 cut(s) 150, 393, 434, 467, 926, 1055
Tsp45I GTSAC 1 cut(s) 1018
TspGWI ACGGA 2 cut(s) 842, 1021
TspRI CASTG 4 cut(s) 502, 598, 770, 995
VpaK11BI GGWCC 6 cut(s) 350, 582, 749, 914, 1070, 1079
XagI CCTNNNNNAGG 1 cut(s) 874
XapI RAATTY 1 cut(s) 684
XceI RCATGY 1 cut(s) 1215
XhoI CTCGAG 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 643
XspI CTAG 4 cut(s) 159, 228, 312, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.