Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001645

Physical Location & Seq

Genomic Coordinates Reverse (-)

29441561 .. 29442244

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTACGGAAAAGATTTTTGTCATTTTTGCCAATGAAAGAGGCAGTGAGGACAAGTATATTGCTTGGCAAGTGGAGGTACAAATGGGCTATGCTTCCGGATCTTGTGTTTGATGAACTGGGTTTCCCAGGAGTACTTTATAAGCATGACAAATTAGTTAAAATGGTTGGTCATGTGCTCTTCCTTCACATTGGTCCAATAAACAAGGTCAAGCTTTCTCATAAAGGTCTTAATGGCACCGCAGATATTGATAGATGGATTCTTCATCTATCAAGAAATTCTATGAAAGAGTTCATATTTAAGTTTTGGAAAAAGCCTGAATACAAGATGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0008150 GO:0008289 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

111

Amino Acids

13.21

Weight (kDa)

10.19

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47900 AT2G47900 AT2G47900
fragaria_vesca	FvH4_2g24790 FvH4_2g24790 FvH4_4g17170 FvH4_4g17170
malus_domestica	MD03G1277100.v1.1 MD11G1298700.v1.1 MD13G1174100.v1.1 MD16G1175400.v1.1
prunus_persica	Prupe.1G142500_v2.0.a1 Prupe.1G142500_v2.0.a1 Prupe.8G253000_v2.0.a1
pyrus_communis	pycom03g22080 pycom11g26220 pycom16g14710
rosa_chinensis	RchiOBHm_Chr4g0420951 RchiOBHm_Chr5g0065161 RchiOBHm_Chr6g0292621
rosa_laevigata	RLG00000007717 RLG00000012006 RLG00000035763
rosa_multiflora	Rmu_co8302979.1_g000001 Rmu_co8397385.1_g000001 Rmu_sc0000515.1_g000008 Rmu_sc0000956.1_g000003 Rmu_sc0009773.1_g000001 Rmu_sc0009911.1_g000003
rosa_roxburghii	Rroxscaffold_1G00016160 Rroxscaffold_5G00363320 Rroxscaffold_7G00174860
rosa_rugosa	Rorug04G0167300 Rorug04G0167400 Rorug04G0167500 Rorug05G0368900 Rorug06G0228400
rosa_samantha	Rh4AG228500 Rh4BG231700 Rh4CG243400 Rh4DG227100 Rh5DG454900 Rh6AG341700 Rh6BG349000 Rh6CG355900 Rh6DG342000
rosa_wichuraiana	Rw4G019780 Rw5G040100 Rw6G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	2 cut(s)	80, 135
AjnI	CCWGG	1 cut(s)	127
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	129
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	123
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	240
BspEI	TCCGGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	79, 134
CviAII	CATG	2 cut(s)	146, 173
CviJI	RGCY	3 cut(s)	89, 214, 316
CviKI_1	RGCY	3 cut(s)	89, 214, 316
CviQI	GTAC	2 cut(s)	79, 134
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	127
FaeI	CATG	2 cut(s)	149, 176
FaiI	YATR	8 cut(s)	59, 92, 141, 147, 174, 222, 284, 296
FatI	CATG	2 cut(s)	145, 172
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	2 cut(s)	149, 176
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	98
Hpy188III	TCNNGA	2 cut(s)	98, 273
HpyAV	CCTTC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	149, 176
Kpn2I	TCCGGA	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	100
LguI	GCTCTTC	1 cut(s)	185
LpnPI	CCDG	5 cut(s)	104, 111, 114, 141, 330
LweI	GCATC	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	172, 254
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	152, 277
MnlI	CCTC	3 cut(s)	34, 42, 69
MroI	TCCGGA	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	4 cut(s)	159, 231, 300, 334
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	149, 176
NlaIV	GGNNCC	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	2 cut(s)	80, 135
RsaNI	GTAC	2 cut(s)	79, 134
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	4 cut(s)	159, 231, 300, 334
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	80, 210, 216, 229
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	2 cut(s)	152, 277
SsiI	CCGC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	127
TasI	AATT	2 cut(s)	152, 277
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	4 cut(s)	159, 231, 300, 334
Tru9I	TTAA	4 cut(s)	159, 231, 300, 334
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	5 cut(s)	50, 129, 254, 283, 299
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.