RLG00000007717

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
20283388 .. 20285631
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007717

Sequence Viewer

Length: 1194 bp
ATGTCAATACGGAGCTTAATCCAGGACATGAGGTTTTCACGGTCGCAGCGGGTGGTTCAGGACCGGTCGGCGGCGGCGGCGGCGGCGCCTGAGGTGGGCGACTCGGTGAAGCAGAGCTGCTGGGCACAGATGCCTCAGGAGCTTCTCAGGGAGGTTTTGATGAGAATTGAGGCTTCTGAGGCCGCCTGGCCGCCGCGGAAGAGCGTCGTCGCCTGCGCCGGAGTTTGCCGGAGCTGGAGGCTGCTGACGAAAGAGATCGTTAAATCGCCTGAGCTCTCCGGAAAGCTCACCTTTCCCATCTCCGTCAAGCAGCCTGGTCCAAGGGATGAACTGCTACGGTGCTTTATAAAAAGGAACCGCTCGACCCAGACATATTATCTTTACCTCGGTTTGACCCTTGCATTAACTGATGAGGGAAAGTTCCTACTTGCTGCTCGCAAGTATAAACGCCCCACCTGCACAGACTATATTATCTCACTAAATGGTGATGAAATGTCAAAGGGCAGCAGCAACTATATTGGAAAACTGAGGTCAAATTTTTTAGGAACCAAGTTCACCATCTTTGATGGGCAGCCAACTGATGTGGGAGCCAAGTTTACAAAAAGTCGATCCACTAGGCTAGTGAATTTGAAACAAGTTTCACCTAGGGTTCCTGCTGGCAACTATCCAGTGGCTCACATTTCATATGAACTAAATATGTTGGGTTCCAGAGTTCGTACAAGCAGGGGTCCAAGGAGAATGCAATGCACCATGGATGGCATTCCTGCCTCTGCGATTCAACCTGGAGGTGTAGCACCCACACAGGCAGAGTTTTCAAGTAGTACTGCCGAGTTCTTTCCGTCCCTTCCATTTTTCCGTTCGAAATCAACTCGCATGGAAAGTTTCCGAGGGCCTTCGGCCAAACCAAAAGATGGGGTGATCGTGTTAAGAAACAAAGCTCCGAGGTGGCATGAACAACTCCAGTGTTGGTGTTTGAACTTTCATGGACGAGTAACAGTTGCTTCAGTGAAAAACTTTCAGTTGGTGGCTTCTCCTGAAAATGGACCGGCTGGGCCAGAGCACGAGAAGATTGTCCTCCAATTTGGGAAAGTGGGCAAGGATTTGTTTACCATGGATTACAGGTACCCAATATCAGCATTCCAGGCATTTTCAATCTGCCTCAGCAGCTTTGACACCAAGATCGCTTGTGAATAA

Protein Analysis

398

Amino Acids

44.29

Weight (kDa)

9.83

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 102 - 392 2.1e-103 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AarI CACCTGC 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 464
Acc65I GGTACC 1 cut(s) 1122
AccB1I GGYRCC 2 cut(s) 85, 1122
AccB7I CCANNNNNTGG 1 cut(s) 911
AccBSI CCGCTC 1 cut(s) 360
AccII CGCG 1 cut(s) 196
AccIII TCCGGA 1 cut(s) 278
AclWI GGATC 1 cut(s) 603
AcoI YGGCCR 2 cut(s) 188, 897
AcsI RAATTY 2 cut(s) 535, 625
AcuI CTGAAG 1 cut(s) 987
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 3 cut(s) 718, 823, 1124
AfiI CCNNNNNNNGG 4 cut(s) 70, 95, 911, 1040
AgeI ACCGGT 1 cut(s) 63
AgsI TTSAA 5 cut(s) 631, 779, 816, 976, 1152
AjnI CCWGG 5 cut(s) 21, 185, 313, 781, 1140
AluBI AGCT 8 cut(s) 15, 117, 142, 234, 274, 286, 938, 1167
AluI AGCT 8 cut(s) 15, 117, 142, 234, 274, 286, 938, 1167
Alw21I GWGCWC 2 cut(s) 276, 1062
AlwI GGATC 1 cut(s) 603
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 5 cut(s) 180, 188, 890, 897, 1052
ApeKI GCWGC 9 cut(s) 46, 117, 241, 310, 431, 504, 507, 571, 1164
ApoI RAATTY 2 cut(s) 535, 625
AsiGI ACCGGT 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 1122
AspA2I CCTAGG 1 cut(s) 644
AspLEI GCGC 2 cut(s) 88, 218
AspS9I GGNCC 6 cut(s) 61, 317, 728, 890, 1043, 1052
AsuHPI GGTGA 6 cut(s) 118, 280, 497, 547, 633, 928
AsuII TTCGAA 1 cut(s) 860
AvaII GGWCC 4 cut(s) 61, 317, 728, 1043
AvrII CCTAGG 1 cut(s) 644
AxyI CCTNAGG 2 cut(s) 90, 135
BaeGI GKGCMC 1 cut(s) 127
BanI GGYRCC 2 cut(s) 85, 1122
BanII GRGCYC 1 cut(s) 276
BauI CACGAG 1 cut(s) 1061
Bbv12I GWGCWC 2 cut(s) 276, 1062
BbvCI CCTCAGC 1 cut(s) 1160
BbvI GCAGC 9 cut(s) 58, 104, 228, 322, 418, 516, 519, 583, 1176
BccI CCATC 5 cut(s) 305, 560, 566, 749, 905
BciT130I CCWGG 5 cut(s) 23, 187, 315, 783, 1142
BfaI CTAG 3 cut(s) 615, 620, 645
BfoI RGCGCY 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 464
BlnI CCTAGG 1 cut(s) 644
BmcAI AGTACT 1 cut(s) 823
Bme1390I CCNGG 5 cut(s) 23, 187, 315, 783, 1142
Bme18I GGWCC 4 cut(s) 61, 317, 728, 1043
BmgT120I GGNCC 6 cut(s) 61, 317, 728, 890, 1043, 1052
BmiI GGNNCC 8 cut(s) 87, 356, 547, 589, 651, 706, 729, 1124
BmrFI CCNGG 5 cut(s) 23, 187, 315, 783, 1142
BmsI GCATC 1 cut(s) 120
BpmI CTGGAG 3 cut(s) 256, 804, 944
Bpu10I CCTNAGC 2 cut(s) 270, 1160
Bpu14I TTCGAA 1 cut(s) 860
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 9 cut(s) 194, 320, 385, 644, 731, 750, 886, 941, 1110
BsaWI WCCGGW 2 cut(s) 63, 278
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 95, 911, 1040
Bse118I RCCGGY 2 cut(s) 63, 1045
Bse1I ACTGG 2 cut(s) 668, 961
Bse21I CCTNAGG 2 cut(s) 90, 135
Bse3DI GCAATG 1 cut(s) 749
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 5 cut(s) 23, 187, 315, 783, 1142
BseDI CCNNGG 9 cut(s) 194, 320, 385, 644, 731, 750, 886, 941, 1110
BseGI GGATG 2 cut(s) 331, 760
BseLI CCNNNNNNNGG 4 cut(s) 70, 95, 911, 1040
BseMI GCAATG 1 cut(s) 749
BseMII CTCAG 7 cut(s) 81, 149, 160, 168, 261, 518, 1174
BseNI ACTGG 2 cut(s) 668, 961
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 9 cut(s) 58, 104, 228, 322, 418, 516, 519, 583, 1176
BseYI CCCAGC 2 cut(s) 120, 1049
BsgI GTGCAG 1 cut(s) 442
Bsh1236I CGCG 1 cut(s) 196
Bsh1285I CGRYCG 2 cut(s) 44, 68
BshFI GGCC 5 cut(s) 182, 190, 892, 899, 1054
BshNI GGYRCC 2 cut(s) 85, 1122
BshTI ACCGGT 1 cut(s) 63
BsiEI CGRYCG 2 cut(s) 44, 68
BsiHKAI GWGCWC 2 cut(s) 276, 1062
BsiSI CCGG 5 cut(s) 64, 219, 229, 279, 1046
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 4 cut(s) 70, 95, 911, 1040
BsmFI GGGAC 1 cut(s) 826
BsmI GAATGC 3 cut(s) 744, 759, 1136
BsnI GGCC 5 cut(s) 182, 190, 892, 899, 1054
Bsp119I TTCGAA 1 cut(s) 860
Bsp1286I GDGCHC 3 cut(s) 127, 276, 1062
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 4 cut(s) 255, 608, 918, 1179
Bsp19I CCATGG 2 cut(s) 750, 1110
BspANI GGCC 5 cut(s) 182, 190, 892, 899, 1054
BspCNI CTCAG 7 cut(s) 82, 148, 159, 169, 262, 519, 1173
BspEI TCCGGA 1 cut(s) 278
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 8 cut(s) 87, 356, 547, 589, 651, 706, 729, 1124
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 1 cut(s) 603
BspQI GCTCTTC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 860
BspT107I GGYRCC 2 cut(s) 85, 1122
BsrBI CCGCTC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 749
BsrFI RCCGGY 2 cut(s) 63, 1045
BsrI ACTGG 2 cut(s) 668, 961
BssAI RCCGGY 2 cut(s) 63, 1045
BssECI CCNNGG 9 cut(s) 194, 320, 385, 644, 731, 750, 886, 941, 1110
BssMI GATC 4 cut(s) 255, 608, 918, 1179
BssNI GRCGYC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 1061
BssT1I CCWWGG 5 cut(s) 320, 644, 731, 750, 1110
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 5 cut(s) 23, 187, 315, 783, 1142
Bst4CI ACNGT 3 cut(s) 42, 339, 997
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 860
BstC8I GCNNGC 3 cut(s) 214, 436, 658
BstDEI CTNAG 7 cut(s) 90, 135, 146, 177, 270, 527, 1160
BstDSI CCRYGG 3 cut(s) 194, 750, 1110
BstF5I GGATG 2 cut(s) 331, 760
BstFNI CGCG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 2 cut(s) 88, 218
BstKTI GATC 4 cut(s) 258, 611, 921, 1182
BstMBI GATC 4 cut(s) 255, 608, 918, 1179
BstMCI CGRYCG 2 cut(s) 44, 68
BstMWI GCNNNNNNNGC 8 cut(s) 77, 80, 83, 139, 179, 456, 1142, 1164
BstNI CCWGG 5 cut(s) 23, 187, 315, 783, 1142
BstSCI CCNGG 5 cut(s) 21, 185, 313, 781, 1140
BstSLI GKGCMC 1 cut(s) 127
BstUI CGCG 1 cut(s) 196
BstV1I GCAGC 9 cut(s) 58, 104, 228, 322, 418, 516, 519, 583, 1176
Bsu36I CCTNAGG 2 cut(s) 90, 135
BsuRI GGCC 5 cut(s) 182, 190, 892, 899, 1054
BtgI CCRYGG 3 cut(s) 194, 750, 1110
BtsCI GGATG 2 cut(s) 331, 760
BtsIMutI CAGTG 3 cut(s) 675, 968, 1011
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 3 cut(s) 214, 436, 658
CfoI GCGC 2 cut(s) 88, 218
Cfr10I RCCGGY 2 cut(s) 63, 1045
Cfr13I GGNCC 6 cut(s) 61, 317, 728, 890, 1043, 1052
Cfr42I CCGCGG 1 cut(s) 197
CseI GACGC 1 cut(s) 193
Csp6I GTAC 3 cut(s) 717, 822, 1123
CspAI ACCGGT 1 cut(s) 63
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviAII CATG 6 cut(s) 28, 751, 874, 950, 983, 1111
CviQI GTAC 3 cut(s) 717, 822, 1123
DdeI CTNAG 7 cut(s) 90, 135, 146, 177, 270, 527, 1160
DinI GGCGCC 1 cut(s) 87
DpnI GATC 4 cut(s) 257, 610, 920, 1181
DpnII GATC 4 cut(s) 255, 608, 918, 1179
EaeI YGGCCR 2 cut(s) 188, 897
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 5 cut(s) 320, 644, 731, 750, 1110
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 4 cut(s) 61, 317, 728, 1043
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 987
Eco81I CCTNAGG 2 cut(s) 90, 135
EcoICRI GAGCTC 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 890
EcoRII CCWGG 5 cut(s) 21, 185, 313, 781, 1140
EcoT14I CCWWGG 5 cut(s) 320, 644, 731, 750, 1110
EcoT38I GRGCYC 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 87
EheI GGCGCC 1 cut(s) 87
ErhI CCWWGG 5 cut(s) 320, 644, 731, 750, 1110
FaeI CATG 6 cut(s) 31, 754, 877, 953, 986, 1114
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 826
FatI CATG 6 cut(s) 27, 750, 873, 949, 982, 1110
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 1 cut(s) 685
FokI GGATG 2 cut(s) 338, 767
FriOI GRGCYC 1 cut(s) 276
FspBI CTAG 3 cut(s) 615, 620, 645
GlaI GCGC 2 cut(s) 87, 217
GsaI CCCAGC 2 cut(s) 124, 1053
GsuI CTGGAG 3 cut(s) 256, 804, 944
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 5 cut(s) 182, 190, 892, 899, 1054
HapII CCGG 5 cut(s) 64, 219, 229, 279, 1046
HgaI GACGC 1 cut(s) 193
HhaI GCGC 2 cut(s) 88, 218
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 6 cut(s) 31, 754, 877, 953, 986, 1114
Hin6I GCGC 2 cut(s) 86, 216
HinP1I GCGC 2 cut(s) 86, 216
HinfI GANTC 2 cut(s) 101, 775
HpaII CCGG 5 cut(s) 64, 219, 229, 279, 1046
HphI GGTGA 6 cut(s) 118, 280, 497, 547, 633, 928
Hpy166II GTNNAC 3 cut(s) 555, 597, 1107
Hpy188I TCNGA 3 cut(s) 178, 887, 942
Hpy188III TCNNGA 5 cut(s) 59, 137, 279, 708, 1034
Hpy8I GTNNAC 3 cut(s) 555, 597, 1107
Hpy99I CGWCG 2 cut(s) 209, 212
HpyAV CCTTC 2 cut(s) 854, 903
HpyCH4III ACNGT 3 cut(s) 42, 339, 997
HpyCH4V TGCA 4 cut(s) 401, 459, 742, 747
HpyF10VI GCNNNNNNNGC 8 cut(s) 77, 80, 83, 139, 179, 456, 1142, 1164
HpyF3I CTNAG 7 cut(s) 90, 135, 146, 177, 270, 527, 1160
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 6 cut(s) 31, 754, 877, 953, 986, 1114
HspAI GCGC 2 cut(s) 86, 216
KasI GGCGCC 1 cut(s) 85
Kpn2I TCCGGA 1 cut(s) 278
KpnI GGTACC 1 cut(s) 1126
KspI CCGCGG 1 cut(s) 197
Kzo9I GATC 4 cut(s) 255, 608, 918, 1179
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 5 cut(s) 12, 139, 231, 587, 943
Lsp1109I GCAGC 9 cut(s) 58, 104, 228, 322, 418, 516, 519, 583, 1176
LweI GCATC 1 cut(s) 120
MaeI CTAG 3 cut(s) 615, 620, 645
MaeIII GTNAC 1 cut(s) 991
MalI GATC 4 cut(s) 257, 610, 920, 1181
MbiI CCGCTC 1 cut(s) 360
MboI GATC 4 cut(s) 255, 608, 918, 1179
MboII GAAGA 2 cut(s) 211, 1078
MhlI GDGCHC 3 cut(s) 127, 276, 1062
MluCI AATT 4 cut(s) 165, 535, 625, 1079
Mly113I GGCGCC 1 cut(s) 86
MlyI GAGTC 1 cut(s) 95
MroI TCCGGA 1 cut(s) 278
MseI TTAA 4 cut(s) 17, 261, 404, 926
MspA1I CMGCKG 2 cut(s) 49, 196
MspI CCGG 5 cut(s) 64, 219, 229, 279, 1046
MspR9I CCNGG 5 cut(s) 23, 187, 315, 783, 1142
Mva1269I GAATGC 3 cut(s) 744, 759, 1136
MvaI CCWGG 5 cut(s) 23, 187, 315, 783, 1142
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 8 cut(s) 77, 80, 83, 139, 179, 456, 1142, 1164
NarI GGCGCC 1 cut(s) 86
NcoI CCATGG 2 cut(s) 750, 1110
NdeI CATATG 1 cut(s) 685
NdeII GATC 4 cut(s) 255, 608, 918, 1179
NlaIII CATG 6 cut(s) 31, 754, 877, 953, 986, 1114
NlaIV GGNNCC 8 cut(s) 87, 356, 547, 589, 651, 706, 729, 1124
NmeAIII GCCGAG 1 cut(s) 853
NspV TTCGAA 1 cut(s) 860
PaqCI CACCTGC 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 194
PctI GAATGC 3 cut(s) 744, 759, 1136
PfeI GAWTC 1 cut(s) 775
PflMI CCANNNNNTGG 1 cut(s) 911
PfoI TCCNGGA 1 cut(s) 21
PinAI ACCGGT 1 cut(s) 63
PleI GAGTC 1 cut(s) 95
PluTI GGCGCC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 95
PsiI TTATAA 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 5 cut(s) 21, 185, 313, 781, 1140
PspFI CCCAGC 2 cut(s) 120, 1049
PspGI CCWGG 5 cut(s) 21, 185, 313, 781, 1140
PspN4I GGNNCC 8 cut(s) 87, 356, 547, 589, 651, 706, 729, 1124
PspPI GGNCC 6 cut(s) 61, 317, 728, 890, 1043, 1052
RsaI GTAC 3 cut(s) 718, 823, 1124
RsaNI GTAC 3 cut(s) 717, 822, 1123
SacI GAGCTC 1 cut(s) 276
SacII CCGCGG 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 4 cut(s) 17, 261, 404, 926
Sau3AI GATC 4 cut(s) 255, 608, 918, 1179
Sau96I GGNCC 6 cut(s) 61, 317, 728, 890, 1043, 1052
ScaI AGTACT 1 cut(s) 823
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 5 cut(s) 23, 187, 315, 783, 1142
SduI GDGCHC 3 cut(s) 127, 276, 1062
SfaNI GCATC 1 cut(s) 120
SfoI GGCGCC 1 cut(s) 87
Sfr303I CCGCGG 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 860
SgrBI CCGCGG 1 cut(s) 197
SinI GGWCC 4 cut(s) 61, 317, 728, 1043
Sse9I AATT 4 cut(s) 165, 535, 625, 1079
SspDI GGCGCC 1 cut(s) 85
SspMI CTAG 3 cut(s) 615, 620, 645
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 5 cut(s) 21, 185, 313, 781, 1140
StyI CCWWGG 5 cut(s) 320, 644, 731, 750, 1110
TaaI ACNGT 3 cut(s) 42, 339, 997
TaqI TCGA 3 cut(s) 362, 607, 860
TasI AATT 4 cut(s) 165, 535, 625, 1079
TatI WGTACW 1 cut(s) 821
TauI GCSGC 8 cut(s) 74, 77, 80, 83, 86, 185, 193, 196
TfiI GAWTC 1 cut(s) 775
Tru1I TTAA 4 cut(s) 17, 261, 404, 926
Tru9I TTAA 4 cut(s) 17, 261, 404, 926
TscAI CASTG 3 cut(s) 675, 968, 1011
TseI GCWGC 9 cut(s) 46, 117, 241, 310, 431, 504, 507, 571, 1164
TspDTI ATGAA 6 cut(s) 342, 504, 672, 702, 966, 971
TspGWI ACGGA 4 cut(s) 25, 292, 828, 845
TspRI CASTG 3 cut(s) 675, 968, 1011
Van91I CCANNNNNTGG 1 cut(s) 911
VpaK11BI GGWCC 4 cut(s) 61, 317, 728, 1043
XapI RAATTY 2 cut(s) 535, 625
XmaJI CCTAGG 1 cut(s) 644
XspI CTAG 3 cut(s) 615, 620, 645
ZrmI AGTACT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.