Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001645

Physical Location & Seq

Genomic Coordinates Reverse (-)

29363996 .. 29367876

Gene Structure 3881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0167300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATGGGAAAGAGTAAGGGAATGAGAATCACATGCCAGGCCGCAATTCCAGCTGATAATGTCCCTGACATGGGTAAGAGGAAGCTTATGAATCTGCTTCTTCTAACGAATCTCACTTCCCTCTGGTTTCCTATGCCACTTTCTTTGCTCCAACTGGCTTTGATGTTGGAAGTGGTGGTCAAGTTGCCAAGGATGCTCTACGAAACGATAGTAACCTTTAAATTGGGTATTGAACTTAACTCAAGTCTTTGCTATGGAAAGTTGGAAGCTGGACTACTTACATTCATTATACCCATTGTTCTTCTTGGGCACCTGTGTGGCTTGATGGATGATGGAGTGAAACTTTCTCTACTGGGTTCATGGATGGCCTTGTTTGTATTATTTGCTGGAAGGAAGTTCTCACAACCAATTAAGAAAGTATTCCTTAAGATGATAAGAGGATTTGTTCGCATAGCCATGGAGAATGGCTATCCCCTAGTTTCAGTTTTCTGCTTTGATCAGTCAAATGTTTATAAGTGGTGTAAGCCAAGTGGGGAGTTATTCCTGAAGTTTGCTAGAACTATCAGATTCACCCTTATTGCCTTCCGGGGAATGTTTGGACTTGCAGATATATGGGTACAGAATGGAGTCAATACTAGAGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0008150 GO:0008289 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

215

Amino Acids

24.18

Weight (kDa)

9.75

Isoelectric Point (pI)

18.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TM_PetC	PF25471	18 - 37	2e-06	Iron-sulfur subunit PetC transmembrane anchor
DUF2301	PF10063	53 - 139	3.9e-18	Uncharacterized integral membrane protein (DUF2301)
DAGAT	PF03982	138 - 200	3.9e-11	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47900 AT2G47900 AT2G47900
fragaria_vesca	FvH4_2g24790 FvH4_2g24790 FvH4_4g17170 FvH4_4g17170
malus_domestica	MD03G1277100.v1.1 MD11G1298700.v1.1 MD13G1174100.v1.1 MD16G1175400.v1.1
prunus_persica	Prupe.1G142500_v2.0.a1 Prupe.1G142500_v2.0.a1 Prupe.8G253000_v2.0.a1
pyrus_communis	pycom03g22080 pycom11g26220 pycom16g14710
rosa_chinensis	RchiOBHm_Chr4g0420951 RchiOBHm_Chr5g0065161 RchiOBHm_Chr6g0292621
rosa_laevigata	RLG00000007717 RLG00000012006 RLG00000035763
rosa_multiflora	Rmu_co8302979.1_g000001 Rmu_co8397385.1_g000001 Rmu_sc0000515.1_g000008 Rmu_sc0000956.1_g000003 Rmu_sc0009773.1_g000001 Rmu_sc0009911.1_g000003
rosa_roxburghii	Rroxscaffold_1G00016160 Rroxscaffold_5G00363320 Rroxscaffold_7G00174860
rosa_rugosa	Rorug04G0167300 Rorug04G0167400 Rorug04G0167500 Rorug05G0368900 Rorug06G0228400
rosa_samantha	Rh4AG228500 Rh4BG231700 Rh4CG243400 Rh4DG227100 Rh5DG454900 Rh6AG341700 Rh6BG349000 Rh6CG355900 Rh6DG342000
rosa_wichuraiana	Rw4G019780 Rw5G040100 Rw6G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	309
AciI	CCGC	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	70, 71
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	315
AluBI	AGCT	4 cut(s)	53, 85, 269, 641
AluI	AGCT	4 cut(s)	53, 85, 269, 641
AoxI	GGCC	2 cut(s)	39, 366
Asp700I	GAANNNNTTC	1 cut(s)	419
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BccI	CCATC	3 cut(s)	319, 326, 358
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	587
BfaI	CTAG	3 cut(s)	476, 555, 636
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	38, 587
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	2 cut(s)	38, 587
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	587
BsaJI	CCNNGG	3 cut(s)	188, 456, 586
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 71
Bse1I	ACTGG	2 cut(s)	159, 357
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	3 cut(s)	188, 456, 586
BseGI	GGATG	3 cut(s)	198, 334, 369
BseLI	CCNNNNNNNGG	2 cut(s)	70, 71
BseNI	ACTGG	2 cut(s)	159, 357
BseSI	GKGCMC	1 cut(s)	312
BshFI	GGCC	2 cut(s)	41, 368
BshNI	GGYRCC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	586
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	70, 71
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	41, 368
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	496
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	41, 368
BspLI	GGNNCC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	309
BspTI	CTTAAG	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	159, 357
BssECI	CCNNGG	3 cut(s)	188, 456, 586
BssMI	GATC	1 cut(s)	496
BssT1I	CCWWGG	2 cut(s)	188, 456
Bst2UI	CCWGG	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	425
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	3 cut(s)	198, 334, 369
BstKTI	GATC	1 cut(s)	499
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 193
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	36, 585
BstSLI	GKGCMC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	41, 368
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	198, 334, 369
Csp6I	GTAC	1 cut(s)	617
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviAII	CATG	4 cut(s)	33, 70, 360, 457
CviQI	GTAC	1 cut(s)	617
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
DraI	TTTAAA	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	188, 456
Eco57I	CTGAAG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	188, 456
ErhI	CCWWGG	2 cut(s)	188, 456
FaeI	CATG	4 cut(s)	36, 73, 363, 460
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	4 cut(s)	32, 69, 359, 456
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	3 cut(s)	205, 341, 376
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	3 cut(s)	476, 555, 636
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	41, 368
HapII	CCGG	1 cut(s)	586
Hin1II	CATG	4 cut(s)	36, 73, 363, 460
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	5 cut(s)	27, 91, 109, 567, 627
HpaII	CCGG	1 cut(s)	586
HphI	GGTGA	1 cut(s)	562
Hpy188I	TCNGA	1 cut(s)	566
Hpy188III	TCNNGA	1 cut(s)	544
HpyAV	CCTTC	2 cut(s)	384, 592
HpyCH4V	TGCA	1 cut(s)	605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 193
Hsp92II	CATG	4 cut(s)	36, 73, 363, 460
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	153
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	3 cut(s)	476, 555, 636
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	2 cut(s)	92, 293
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	3 cut(s)	45, 221, 408
MlyI	GAGTC	1 cut(s)	636
MmeI	TCCRAC	3 cut(s)	147, 175, 243
MnlI	CCTC	3 cut(s)	72, 131, 431
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	4 cut(s)	219, 237, 411, 426
MslI	CAYNNNNRTG	2 cut(s)	315, 455
MspA1I	CMGCKG	1 cut(s)	53
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	2 cut(s)	38, 587
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	50, 193
NciI	CCSGG	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	4 cut(s)	36, 73, 363, 460
NlaIV	GGNNCC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	36
OliI	CACNNNNGTG	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	4 cut(s)	27, 91, 109, 567
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	2 cut(s)	315, 455
SaqAI	TTAA	4 cut(s)	219, 237, 411, 426
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	636
ScrFI	CCNGG	2 cut(s)	38, 587
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	6 cut(s)	55, 87, 218, 271, 315, 643
SfaNI	GCATC	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	315, 455
SmlI	CTYRAG	2 cut(s)	241, 425
SmoI	CTYRAG	2 cut(s)	241, 425
Sse9I	AATT	3 cut(s)	45, 221, 408
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	3 cut(s)	476, 555, 636
StyD4I	CCNGG	2 cut(s)	36, 585
StyI	CCWWGG	2 cut(s)	188, 456
TasI	AATT	3 cut(s)	45, 221, 408
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	4 cut(s)	27, 91, 109, 567
Tru1I	TTAA	4 cut(s)	219, 237, 411, 426
Tru9I	TTAA	4 cut(s)	219, 237, 411, 426
TspDTI	ATGAA	3 cut(s)	104, 274, 348
Vha464I	CTTAAG	1 cut(s)	425
XceI	RCATGY	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	3 cut(s)	476, 555, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.