Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001645

Physical Location & Seq

Genomic Coordinates Reverse (-)

57913098 .. 57916494

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG349000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCTTTCAAGAGTATACTTCAGGATATGAAAGGTGAGTTTGGGAGCATTTCGAGGAAAGGGTTTGATGTGAAATTTGGGTATGGGATGAGATCGAGGTCTCACCGGGTGGTTCAGGATACCTCGTTCAGGATTGATGCTTTGAAGCAGAGTTGTTGGGCTAACATGCCGCCGGAGCTTTTGAGGGATGTGTTGATGAGAATTGAGGCGTCTGATGATACATGGCCTCCGCGGAAGAACGTGGTCGCTTGTGCTGGTGTGTGCAAGAATTGGAGAGAGATCATGAAAGAGATTGTCAAGTCCCTAGAAGTTTCGGGGAAGCTGACGTTTCCAATCTCCTTGAAGCAGCCTGGTCCCAGGGATTCCCTTCTCCAGTGCTATATAAAGCGGAGACGTAGCAACCAGACATATTATCTTTTCCTGGGCTTAAATCAAGCTTCAACTGATGATGGGAAGTTCCTTCTTGCTGCGAGAAAGTGTAGACGCCCAACATGCACAGATTATATCATCTCTCTGAATTCTGAAGATGTGTCAAAAGGGAACAGTGCCTTTGTTGGAAAGCTCAGATCAAATTTTCTGGGAACCAAATTCACAATCTATGATGCGCAACCAACTAATACTGGAGCCAAAGTCACTAAATGTCATTCCTCCAGACTTGTAAATATGAAACAAGTGTCACCCAGAGTTCCTGCTGGCAACTATCCTGTGGCCCACATTGCTTATGAGTTGAATGTCTTGGGTTCCAGGTATGAAAATATTGTTGAATTGATGTTGAAGATAATTACTGGAGCTTTAAGACATTTATTGTTGAAGATATTGTTCACTGGCCAATTTGTGGTTGATCATTGTTCAGTTGCTAGTTTCTATAGTAATATTTATTATAAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

296

Amino Acids

33.6

Weight (kDa)

9.71

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	114 - 259	4e-44	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47900 AT2G47900 AT2G47900
fragaria_vesca	FvH4_2g24790 FvH4_2g24790 FvH4_4g17170 FvH4_4g17170
malus_domestica	MD03G1277100.v1.1 MD11G1298700.v1.1 MD13G1174100.v1.1 MD16G1175400.v1.1
prunus_persica	Prupe.1G142500_v2.0.a1 Prupe.1G142500_v2.0.a1 Prupe.8G253000_v2.0.a1
pyrus_communis	pycom03g22080 pycom11g26220 pycom16g14710
rosa_chinensis	RchiOBHm_Chr4g0420951 RchiOBHm_Chr5g0065161 RchiOBHm_Chr6g0292621
rosa_laevigata	RLG00000007717 RLG00000012006 RLG00000035763
rosa_multiflora	Rmu_co8302979.1_g000001 Rmu_co8397385.1_g000001 Rmu_sc0000515.1_g000008 Rmu_sc0000956.1_g000003 Rmu_sc0009773.1_g000001 Rmu_sc0009911.1_g000003
rosa_roxburghii	Rroxscaffold_1G00016160 Rroxscaffold_5G00363320 Rroxscaffold_7G00174860
rosa_rugosa	Rorug04G0167300 Rorug04G0167400 Rorug04G0167500 Rorug05G0368900 Rorug06G0228400
rosa_samantha	Rh4AG228500 Rh4BG231700 Rh4CG243400 Rh4DG227100 Rh5DG454900 Rh6AG341700 Rh6BG349000 Rh6CG355900 Rh6DG342000
rosa_wichuraiana	Rw4G019780 Rw5G040100 Rw6G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
Acc16I	TGCGCA	1 cut(s)	606
AccB7I	CCANNNNNTGG	1 cut(s)	835
AccI	GTMKAC	2 cut(s)	16, 481
AccII	CGCG	1 cut(s)	232
AciI	CCGC	4 cut(s)	170, 230, 232, 388
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	4 cut(s)	74, 517, 571, 587
AcuI	CTGAAG	2 cut(s)	5, 543
AcyI	GRCGYC	2 cut(s)	209, 484
AdeI	CACNNNGTG	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	129, 835
AgsI	TTSAA	8 cut(s)	10, 145, 343, 441, 730, 764, 775, 811
AjnI	CCWGG	4 cut(s)	349, 356, 420, 743
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	5 cut(s)	178, 322, 437, 562, 791
AluI	AGCT	5 cut(s)	178, 322, 437, 562, 791
Alw26I	GTCTC	2 cut(s)	105, 385
AoxI	GGCC	3 cut(s)	224, 708, 826
ApeKI	GCWGC	2 cut(s)	346, 467
ApoI	RAATTY	4 cut(s)	74, 517, 571, 587
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	353, 709
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	47, 95, 669
AvaII	GGWCC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	358, 454
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	4 cut(s)	351, 358, 422, 745
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	105, 385
BfaI	CTAG	2 cut(s)	305, 858
BfmI	CTRYAG	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	170, 347, 468
BlsI	GCNGC	3 cut(s)	171, 348, 469
Bme1390I	CCNGG	5 cut(s)	107, 351, 358, 422, 745
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	353, 709
BmiI	GGNNCC	4 cut(s)	355, 583, 625, 742
BmrFI	CCNGG	5 cut(s)	107, 351, 358, 422, 745
BmsI	GCATC	2 cut(s)	127, 592
BpmI	CTGGAG	4 cut(s)	356, 634, 642, 807
BpuMI	CCSGG	1 cut(s)	107
BsaHI	GRCGYC	2 cut(s)	209, 484
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	4 cut(s)	230, 356, 357, 421
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 615, 645
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 835
Bse1I	ACTGG	4 cut(s)	373, 625, 790, 829
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	4 cut(s)	351, 358, 422, 745
BseDI	CCNNGG	4 cut(s)	230, 356, 357, 421
BseGI	GGATG	2 cut(s)	93, 193
BseLI	CCNNNNNNNGG	2 cut(s)	129, 835
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	1 cut(s)	577
BseNI	ACTGG	4 cut(s)	373, 625, 790, 829
BseXI	GCAGC	2 cut(s)	358, 454
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	226, 710, 828
BsiSI	CCGG	2 cut(s)	106, 173
BslFI	GGGAC	2 cut(s)	286, 339
BslI	CCNNNNNNNGG	2 cut(s)	129, 835
BsmAI	GTCTC	2 cut(s)	105, 385
BsmBI	CGTCTC	1 cut(s)	385
BsmFI	GGGAC	2 cut(s)	286, 339
BsnI	GGCC	3 cut(s)	226, 710, 828
Bso31I	GGTCTC	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	92, 279, 566, 841
BspACI	CCGC	4 cut(s)	170, 230, 232, 388
BspANI	GGCC	3 cut(s)	226, 710, 828
BspCNI	CTCAG	1 cut(s)	576
BspFNI	CGCG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	4 cut(s)	355, 583, 625, 742
BspTNI	GGTCTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	4 cut(s)	373, 625, 790, 829
BssECI	CCNNGG	4 cut(s)	230, 356, 357, 421
BssMI	GATC	4 cut(s)	92, 279, 566, 841
BssNAI	GTATAC	1 cut(s)	17
BssNI	GRCGYC	2 cut(s)	209, 484
Bst1107I	GTATAC	1 cut(s)	17
Bst2UI	CCWGG	4 cut(s)	351, 358, 422, 745
Bst4CI	ACNGT	1 cut(s)	545
BstACI	GRCGYC	2 cut(s)	209, 484
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	1 cut(s)	563
BstDSI	CCRYGG	1 cut(s)	230
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	93, 193
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	4 cut(s)	95, 282, 569, 844
BstMAI	GTCTC	2 cut(s)	105, 385
BstMBI	GATC	4 cut(s)	92, 279, 566, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 492, 716
BstNI	CCWGG	4 cut(s)	351, 358, 422, 745
BstNSI	RCATGY	2 cut(s)	169, 495
BstSCI	CCNGG	5 cut(s)	105, 349, 356, 420, 743
BstSFI	CTRYAG	1 cut(s)	865
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	358, 454
BstZ17I	GTATAC	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	226, 710, 828
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	93, 193
BtsIMutI	CAGTG	3 cut(s)	380, 550, 822
Cac8I	GCNNGC	1 cut(s)	694
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	353, 709
Cfr42I	CCGCGG	1 cut(s)	233
CseI	GACGC	2 cut(s)	198, 492
CviAII	CATG	4 cut(s)	166, 222, 283, 492
DdeI	CTNAG	1 cut(s)	563
DpnI	GATC	4 cut(s)	94, 281, 568, 843
DpnII	GATC	4 cut(s)	92, 279, 566, 841
DraIII	CACNNNGTG	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	826
Eco31I	GGTCTC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	5, 543
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	4 cut(s)	349, 356, 420, 743
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	4 cut(s)	169, 225, 286, 495
FaqI	GGGAC	2 cut(s)	286, 339
FatI	CATG	4 cut(s)	165, 221, 282, 491
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	2 cut(s)	16, 481
Fnu4HI	GCNGC	3 cut(s)	170, 347, 468
FokI	GGATG	2 cut(s)	100, 200
Fsp4HI	GCNGC	3 cut(s)	170, 347, 468
FspBI	CTAG	2 cut(s)	305, 858
FspI	TGCGCA	1 cut(s)	606
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	3 cut(s)	170, 347, 468
GsuI	CTGGAG	4 cut(s)	356, 634, 642, 807
HaeIII	GGCC	3 cut(s)	226, 710, 828
HapII	CCGG	2 cut(s)	106, 173
HgaI	GACGC	2 cut(s)	198, 492
HhaI	GCGC	1 cut(s)	607
Hin1I	GRCGYC	2 cut(s)	209, 484
Hin1II	CATG	4 cut(s)	169, 225, 286, 495
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	2 cut(s)	106, 173
HphI	GGTGA	3 cut(s)	47, 95, 669
Hpy166II	GTNNAC	3 cut(s)	17, 482, 822
Hpy188I	TCNGA	4 cut(s)	214, 516, 523, 566
Hpy188III	TCNNGA	6 cut(s)	10, 23, 116, 130, 283, 651
Hpy8I	GTNNAC	3 cut(s)	17, 482, 822
HpyAV	CCTTC	2 cut(s)	377, 470
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	3 cut(s)	240, 326, 394
HpyCH4V	TGCA	2 cut(s)	264, 495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 492, 716
HpyF3I	CTNAG	1 cut(s)	563
HpySE526I	ACGT	3 cut(s)	240, 326, 394
Hsp92I	GRCGYC	2 cut(s)	209, 484
Hsp92II	CATG	4 cut(s)	169, 225, 286, 495
HspAI	GCGC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	841
KspI	CCGCGG	1 cut(s)	233
Kzo9I	GATC	4 cut(s)	92, 279, 566, 841
LmnI	GCTCC	4 cut(s)	45, 175, 623, 788
Lsp1109I	GCAGC	2 cut(s)	358, 454
LweI	GCATC	2 cut(s)	127, 592
MaeI	CTAG	2 cut(s)	305, 858
MaeII	ACGT	3 cut(s)	240, 326, 394
MaeIII	GTNAC	2 cut(s)	631, 675
MalI	GATC	4 cut(s)	94, 281, 568, 843
MboI	GATC	4 cut(s)	92, 279, 566, 841
MboII	GAAGA	4 cut(s)	247, 536, 787, 823
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	9 cut(s)	74, 201, 268, 517, 571, 587, 764, 780, 830
MluNI	TGGCCA	1 cut(s)	828
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	7 cut(s)	48, 90, 133, 177, 199, 237, 658
Mox20I	TGGCCA	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	2 cut(s)	428, 794
Msp20I	TGGCCA	1 cut(s)	828
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	2 cut(s)	106, 173
MspR9I	CCNGG	5 cut(s)	107, 351, 358, 422, 745
MvaI	CCWGG	4 cut(s)	351, 358, 422, 745
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	175, 492, 716
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	4 cut(s)	92, 279, 566, 841
NlaIII	CATG	4 cut(s)	169, 225, 286, 495
NlaIV	GGNNCC	4 cut(s)	355, 583, 625, 742
NmuCI	GTSAC	2 cut(s)	631, 675
NsbI	TGCGCA	1 cut(s)	606
NspI	RCATGY	2 cut(s)	169, 495
PagI	TCATGA	1 cut(s)	282
PasI	CCCWGGG	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	835
PkrI	GCNGC	3 cut(s)	171, 348, 469
PsiI	TTATAA	1 cut(s)	882
Psp6I	CCWGG	4 cut(s)	349, 356, 420, 743
PspGI	CCWGG	4 cut(s)	349, 356, 420, 743
PspN4I	GGNNCC	4 cut(s)	355, 583, 625, 742
PspPI	GGNCC	2 cut(s)	353, 709
SacII	CCGCGG	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	428, 794
SatI	GCNGC	3 cut(s)	170, 347, 468
Sau3AI	GATC	4 cut(s)	92, 279, 566, 841
Sau96I	GGNCC	2 cut(s)	353, 709
ScrFI	CCNGG	5 cut(s)	107, 351, 358, 422, 745
SfaNI	GCATC	2 cut(s)	127, 592
SfcI	CTRYAG	1 cut(s)	865
Sfr303I	CCGCGG	1 cut(s)	233
SgrBI	CCGCGG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	353
Sse9I	AATT	9 cut(s)	74, 201, 268, 517, 571, 587, 764, 780, 830
SsiI	CCGC	4 cut(s)	170, 230, 232, 388
SspI	AATATT	2 cut(s)	757, 874
SspMI	CTAG	2 cut(s)	305, 858
StyD4I	CCNGG	5 cut(s)	105, 349, 356, 420, 743
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	3 cut(s)	243, 329, 397
TaqI	TCGA	2 cut(s)	53, 95
TasI	AATT	9 cut(s)	74, 201, 268, 517, 571, 587, 764, 780, 830
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	428, 794
Tru9I	TTAA	2 cut(s)	428, 794
TscAI	CASTG	3 cut(s)	380, 550, 829
TseFI	GTSAC	2 cut(s)	631, 675
TseI	GCWGC	2 cut(s)	346, 467
Tsp45I	GTSAC	2 cut(s)	631, 675
TspDTI	ATGAA	4 cut(s)	44, 299, 680, 765
TspRI	CASTG	3 cut(s)	380, 550, 829
Van91I	CCANNNNNTGG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	4 cut(s)	74, 517, 571, 587
XceI	RCATGY	2 cut(s)	169, 495
XmiI	GTMKAC	2 cut(s)	16, 481
XspI	CTAG	2 cut(s)	305, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.