Rroxscaffold_1G00016160

Tubby-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001645
Physical Location & Seq
Reverse (-)
20119053 .. 20121683
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016160.1

Sequence Viewer

Length: 1269 bp
ATGCCGGCTAGGGATTGGGAGGAGGAAAGCTTCGCTTCTCTTACGGATACGGGGATCGCTTGTCCTACGGGATGGCAACGGAGTATACTTCAGGATAAGAAAGGCGAGTTTGGAAGCAGTTGGAGGAAACGTTTTAATCTGAAATTTAGTTATGGGATGATATCTAGGTCTCACCGGGTGGTTCAGGACACCTCGTTCAGGATTGATGCTTTGAAGCAGAGTTGTTGGGCTAACGTGCCGCCGGAGCTTTTGAGGGAGGTGTTGATGAGAATTGAGGCGTCTGATGATACATGGCCTCTGCGGAAAAATGTGGTCGCTTGTGCTGGTGTGTGCAACAATTGGAGAGAGATGATGAAAGAGACTGTGAAGTCCCCAGAAGTTTCGGGCAAGCTGACATTCCCAATCTCCTTGAAGCAGCCTGGTCCCAGGGATTTCCTTCTCCAGTGTTATATAAAGCGTAGCAACCAGGCATATTATCTTTTCCTGGGCTTAAATCAAGCTTCAACTGATGATGGGAAGTTCCTTCTTGCTGCGAGAAAGCGTAGACGCCTAACATGCACAGATTACATCATCTCTCTGAATTCTGAAAATGTGTCAAAAGGGAACAGTGCCTTTGTTGGAAAGCTCAGATCAAATTTTCTGGGTACCAAATTTACAATCTATGATGCGCAACCAAGTAATACTGGAGCCAATGTCACTAAATGGCATTCCACCATGAAACAAGTGTCACCCAGAGTTCCTGCTGGCGACTATCCTGTGGGCCACATTGCTTATGAGTTGAACGTCTTGGGTTCCAGAGGTTCAAGGAGAATGAAGTGCGTACTGGATGCCATCCCTGCTCGTGCTGTTGCGCCAGGAGGTGCCCCTACGCAGACTGAATTTGTCGATAGCAATCCGGATAGTATTCCATCTCTCCCTCTCTTCGTATCAAAATCAGGTCCCACGATGAGTGTCCAATCTGGACATCAATCTGGTCAGAATGAAGGGATGCTGGTATTAAGGAACAAGGCACCTAGGTGGCTCGAACAACTCCAGCGCTGGTGCTTGAACTTCAATCGACGAGTAACCGAAGCTTCAGTCAAGAATTTTCAGCTGGTTGCTTCTCCAGAGAACGGAGTTGCTGCTGACCCAGAGCATGAGAATGTCATTCTCGAGTGTGGAAAAGTAGGCAAAGATGTATTCACAATGGATTACCAGTATCCAATCTCAGCCTTCCAGGCATTTGCTATTTGCCTTAGCAGCATTGACTCCAAGATTGCTTGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Tub

Protein Analysis

422

Amino Acids

47.13

Weight (kDa)

9.16

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 137 - 417 2e-94 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 367
Acc16I TGCGCA 1 cut(s) 669
Acc65I GGTACC 1 cut(s) 644
AccB1I GGYRCC 3 cut(s) 644, 860, 1009
AccI GTMKAC 2 cut(s) 85, 544
AccIII TCCGGA 1 cut(s) 895
AciI CCGC 2 cut(s) 239, 301
AclI AACGTT 1 cut(s) 130
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 6 cut(s) 143, 580, 634, 650, 878, 1084
AcuI CTGAAG 2 cut(s) 74, 1059
AcyI GRCGYC 2 cut(s) 278, 547
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 2 cut(s) 646, 822
AfeI AGCGCT 1 cut(s) 1037
AfiI CCNNNNNNNGG 2 cut(s) 198, 1112
AgsI TTSAA 7 cut(s) 214, 412, 504, 781, 804, 1048, 1054
AjnI CCWGG 6 cut(s) 418, 425, 465, 483, 853, 1215
AleI CACNNNNGTG 1 cut(s) 1015
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 7 cut(s) 30, 247, 391, 500, 625, 1073, 1093
AluI AGCT 7 cut(s) 30, 247, 391, 500, 625, 1073, 1093
Alw26I GTCTC 2 cut(s) 174, 353
AlwI GGATC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 1151
Aor13HI TCCGGA 1 cut(s) 895
Aor51HI AGCGCT 1 cut(s) 1037
AoxI GGCC 2 cut(s) 293, 760
ApeKI GCWGC 4 cut(s) 415, 530, 1121, 1239
ApoI RAATTY 6 cut(s) 143, 580, 634, 650, 878, 1084
ArsI GACNNNNNNTTYG 2 cut(s) 1062, 1094
Asp718I GGTACC 1 cut(s) 644
AspA2I CCTAGG 1 cut(s) 1013
AspLEI GCGC 3 cut(s) 670, 853, 1038
AspS9I GGNCC 3 cut(s) 422, 760, 938
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 164, 720
AvaI CYCGRG 1 cut(s) 1151
AvaII GGWCC 2 cut(s) 422, 938
AvrII CCTAGG 1 cut(s) 1013
BaeGI GKGCMC 1 cut(s) 865
BanI GGYRCC 3 cut(s) 644, 860, 1009
BauI CACGAG 1 cut(s) 840
BbvI GCAGC 4 cut(s) 427, 517, 1108, 1251
BccI CCATC 4 cut(s) 66, 506, 839, 916
BciT130I CCWGG 6 cut(s) 420, 427, 467, 485, 855, 1217
BciVI GTATCC 2 cut(s) 40, 1209
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 174, 353
BfaI CTAG 3 cut(s) 9, 165, 1014
BfoI RGCGCY 1 cut(s) 1039
BfuI GTATCC 2 cut(s) 40, 1209
BglI GCCNNNNNGGC 1 cut(s) 1217
BisI GCNGC 5 cut(s) 239, 416, 531, 1122, 1240
BlnI CCTAGG 1 cut(s) 1013
BlsI GCNGC 5 cut(s) 240, 417, 532, 1123, 1241
Bme1390I CCNGG 7 cut(s) 176, 420, 427, 467, 485, 855, 1217
Bme18I GGWCC 2 cut(s) 422, 938
BmeT110I CYCGRG 1 cut(s) 1151
BmgT120I GGNCC 3 cut(s) 422, 760, 938
BmiI GGNNCC 7 cut(s) 424, 646, 688, 793, 862, 940, 1011
BmrFI CCNGG 7 cut(s) 176, 420, 427, 467, 485, 855, 1217
BmsI GCATC 4 cut(s) 196, 655, 817, 978
BpmI CTGGAG 4 cut(s) 425, 705, 1016, 1089
Bpu10I CCTNAGC 1 cut(s) 1235
BpuMI CCSGG 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 891
BsaHI GRCGYC 2 cut(s) 278, 547
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 425, 426, 484, 1013
BsaWI WCCGGW 1 cut(s) 895
BsaXI ACNNNNNCTCC 4 cut(s) 115, 145, 678, 708
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 1112
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 4 cut(s) 442, 688, 828, 1195
Bse3DI GCAATG 1 cut(s) 765
Bse8I GATNNNNATC 1 cut(s) 891
BseAI TCCGGA 1 cut(s) 895
BseBI CCWGG 6 cut(s) 420, 427, 467, 485, 855, 1217
BseDI CCNNGG 4 cut(s) 425, 426, 484, 1013
BseGI GGATG 5 cut(s) 77, 162, 831, 832, 993
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 2 cut(s) 198, 1112
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 2 cut(s) 640, 1221
BseNI ACTGG 4 cut(s) 442, 688, 828, 1195
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 4 cut(s) 427, 517, 1108, 1251
BshFI GGCC 2 cut(s) 295, 762
BshNI GGYRCC 3 cut(s) 644, 860, 1009
BsiHKCI CYCGRG 1 cut(s) 1151
BsiSI CCGG 4 cut(s) 5, 175, 242, 896
BslFI GGGAC 3 cut(s) 355, 408, 924
BslI CCNNNNNNNGG 2 cut(s) 198, 1112
BsmAI GTCTC 2 cut(s) 174, 353
BsmFI GGGAC 3 cut(s) 355, 408, 924
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 2 cut(s) 295, 762
Bso31I GGTCTC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 1151
Bsp1286I GDGCHC 1 cut(s) 865
Bsp13I TCCGGA 1 cut(s) 895
Bsp143I GATC 2 cut(s) 54, 629
BspACI CCGC 2 cut(s) 239, 301
BspANI GGCC 2 cut(s) 295, 762
BspCNI CTCAG 2 cut(s) 639, 1220
BspEI TCCGGA 1 cut(s) 895
BspLI GGNNCC 7 cut(s) 424, 646, 688, 793, 862, 940, 1011
BspPI GGATC 1 cut(s) 62
BspT107I GGYRCC 3 cut(s) 644, 860, 1009
BspTNI GGTCTC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 4 cut(s) 442, 688, 828, 1195
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 4 cut(s) 425, 426, 484, 1013
BssMI GATC 2 cut(s) 54, 629
BssNAI GTATAC 1 cut(s) 86
BssNI GRCGYC 2 cut(s) 278, 547
BssSI CACGAG 1 cut(s) 840
BssT1I CCWWGG 1 cut(s) 1013
Bst1107I GTATAC 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 840
Bst2UI CCWGG 6 cut(s) 420, 427, 467, 485, 855, 1217
Bst4CI ACNGT 2 cut(s) 364, 608
Bst6I CTCTTC 1 cut(s) 926
BstACI GRCGYC 2 cut(s) 278, 547
BstC8I GCNNGC 3 cut(s) 6, 389, 745
BstDEI CTNAG 3 cut(s) 626, 1207, 1235
BstENI CCTNNNNNAGG 1 cut(s) 196
BstF5I GGATG 5 cut(s) 77, 162, 831, 832, 993
BstH2I RGCGCY 1 cut(s) 1039
BstHHI GCGC 3 cut(s) 670, 853, 1038
BstKTI GATC 2 cut(s) 57, 632
BstMAI GTCTC 2 cut(s) 174, 353
BstMBI GATC 2 cut(s) 54, 629
BstMWI GCNNNNNNNGC 5 cut(s) 244, 555, 836, 1217, 1239
BstNI CCWGG 6 cut(s) 420, 427, 467, 485, 855, 1217
BstNSI RCATGY 1 cut(s) 558
BstSCI CCNGG 7 cut(s) 174, 418, 425, 465, 483, 853, 1215
BstSLI GKGCMC 1 cut(s) 865
BstV1I GCAGC 4 cut(s) 427, 517, 1108, 1251
BstZ17I GTATAC 1 cut(s) 86
BsuI GTATCC 2 cut(s) 40, 1209
BsuRI GGCC 2 cut(s) 295, 762
BtsCI GGATG 5 cut(s) 77, 162, 831, 832, 993
BtsIMutI CAGTG 2 cut(s) 449, 613
Cac8I GCNNGC 3 cut(s) 6, 389, 745
CfoI GCGC 3 cut(s) 670, 853, 1038
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 3 cut(s) 422, 760, 938
CseI GACGC 2 cut(s) 267, 555
Csp6I GTAC 2 cut(s) 645, 821
CviAII CATG 4 cut(s) 291, 555, 715, 1136
CviQI GTAC 2 cut(s) 645, 821
DdeI CTNAG 3 cut(s) 626, 1207, 1235
DpnI GATC 2 cut(s) 56, 631
DpnII GATC 2 cut(s) 54, 629
DraIII CACNNNGTG 1 cut(s) 178
DrdI GACNNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 926
EarI CTCTTC 1 cut(s) 926
Eco130I CCWWGG 1 cut(s) 1013
Eco31I GGTCTC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 422, 938
Eco47III AGCGCT 1 cut(s) 1037
Eco57I CTGAAG 2 cut(s) 74, 1059
Eco88I CYCGRG 1 cut(s) 1151
EcoNI CCTNNNNNAGG 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 938
EcoRI GAATTC 1 cut(s) 580
EcoRII CCWGG 6 cut(s) 418, 425, 465, 483, 853, 1215
EcoRV GATATC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 1013
FaeI CATG 4 cut(s) 294, 558, 718, 1139
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 3 cut(s) 355, 408, 924
FatI CATG 4 cut(s) 290, 554, 714, 1135
FblI GTMKAC 2 cut(s) 85, 544
Fnu4HI GCNGC 5 cut(s) 239, 416, 531, 1122, 1240
FokI GGATG 5 cut(s) 84, 169, 818, 839, 1000
Fsp4HI GCNGC 5 cut(s) 239, 416, 531, 1122, 1240
FspBI CTAG 3 cut(s) 9, 165, 1014
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 3 cut(s) 669, 852, 1037
GluI GCNGC 5 cut(s) 239, 416, 531, 1122, 1240
GsuI CTGGAG 4 cut(s) 425, 705, 1016, 1089
HaeII RGCGCY 1 cut(s) 1039
HaeIII GGCC 2 cut(s) 295, 762
HapII CCGG 4 cut(s) 5, 175, 242, 896
HgaI GACGC 2 cut(s) 267, 555
HhaI GCGC 3 cut(s) 670, 853, 1038
Hin1I GRCGYC 2 cut(s) 278, 547
Hin1II CATG 4 cut(s) 294, 558, 718, 1139
Hin6I GCGC 3 cut(s) 668, 851, 1036
HinP1I GCGC 3 cut(s) 668, 851, 1036
HindIII AAGCTT 3 cut(s) 28, 498, 1071
HinfI GANTC 1 cut(s) 1247
HpaII CCGG 4 cut(s) 5, 175, 242, 896
HphI GGTGA 2 cut(s) 164, 720
Hpy166II GTNNAC 2 cut(s) 86, 545
Hpy188I TCNGA 6 cut(s) 141, 283, 579, 586, 629, 978
Hpy188III TCNNGA 9 cut(s) 92, 185, 199, 795, 896, 960, 1081, 1106, 1151
Hpy8I GTNNAC 2 cut(s) 86, 545
Hpy99I CGWCG 1 cut(s) 1062
HpyAV CCTTC 4 cut(s) 446, 533, 977, 1222
HpyCH4III ACNGT 2 cut(s) 364, 608
HpyCH4IV ACGT 3 cut(s) 130, 234, 783
HpyCH4V TGCA 2 cut(s) 333, 558
HpyF10VI GCNNNNNNNGC 5 cut(s) 244, 555, 836, 1217, 1239
HpyF3I CTNAG 3 cut(s) 626, 1207, 1235
HpySE526I ACGT 3 cut(s) 130, 234, 783
Hsp92I GRCGYC 2 cut(s) 278, 547
Hsp92II CATG 4 cut(s) 294, 558, 718, 1139
HspAI GCGC 3 cut(s) 668, 851, 1036
Kpn2I TCCGGA 1 cut(s) 895
KpnI GGTACC 1 cut(s) 648
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 54, 629
LmnI GCTCC 2 cut(s) 244, 686
Lsp1109I GCAGC 4 cut(s) 427, 517, 1108, 1251
LweI GCATC 4 cut(s) 196, 655, 817, 978
MaeI CTAG 3 cut(s) 9, 165, 1014
MaeII ACGT 3 cut(s) 130, 234, 783
MaeIII GTNAC 3 cut(s) 694, 726, 1063
MalI GATC 2 cut(s) 56, 631
MboI GATC 2 cut(s) 54, 629
MboII GAAGA 1 cut(s) 913
MfeI CAATTG 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 8 cut(s) 143, 270, 337, 580, 634, 650, 878, 1084
MlyI GAGTC 1 cut(s) 1241
MmeI TCCRAC 2 cut(s) 101, 598
MroI TCCGGA 1 cut(s) 895
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 3 cut(s) 135, 491, 998
MslI CAYNNNNRTG 2 cut(s) 1015, 1140
MspA1I CMGCKG 1 cut(s) 1093
MspI CCGG 4 cut(s) 5, 175, 242, 896
MspR9I CCNGG 7 cut(s) 176, 420, 427, 467, 485, 855, 1217
MunI CAATTG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 706
MvaI CCWGG 6 cut(s) 420, 427, 467, 485, 855, 1217
MwoI GCNNNNNNNGC 5 cut(s) 244, 555, 836, 1217, 1239
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 176
NdeII GATC 2 cut(s) 54, 629
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 4 cut(s) 294, 558, 718, 1139
NlaIV GGNNCC 7 cut(s) 424, 646, 688, 793, 862, 940, 1011
NmuCI GTSAC 2 cut(s) 694, 726
NsbI TGCGCA 1 cut(s) 669
NspI RCATGY 1 cut(s) 558
OliI CACNNNNGTG 1 cut(s) 1015
PaeR7I CTCGAG 1 cut(s) 1151
PasI CCCWGGG 1 cut(s) 426
PctI GAATGC 1 cut(s) 706
PdiI GCCGGC 1 cut(s) 6
PkrI GCNGC 5 cut(s) 240, 417, 532, 1123, 1241
PleI GAGTC 1 cut(s) 1241
PpsI GAGTC 1 cut(s) 1241
PpuMI RGGWCCY 1 cut(s) 938
Psp1406I AACGTT 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 938
Psp6I CCWGG 6 cut(s) 418, 425, 465, 483, 853, 1215
PspGI CCWGG 6 cut(s) 418, 425, 465, 483, 853, 1215
PspN4I GGNNCC 7 cut(s) 424, 646, 688, 793, 862, 940, 1011
PspPI GGNCC 3 cut(s) 422, 760, 938
PspPPI RGGWCCY 1 cut(s) 938
PvuII CAGCTG 1 cut(s) 1093
RsaI GTAC 2 cut(s) 646, 822
RsaNI GTAC 2 cut(s) 645, 821
RseI CAYNNNNRTG 2 cut(s) 1015, 1140
SaqAI TTAA 3 cut(s) 135, 491, 998
SatI GCNGC 5 cut(s) 239, 416, 531, 1122, 1240
Sau3AI GATC 2 cut(s) 54, 629
Sau96I GGNCC 3 cut(s) 422, 760, 938
SchI GAGTC 1 cut(s) 1241
ScrFI CCNGG 7 cut(s) 176, 420, 427, 467, 485, 855, 1217
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 4 cut(s) 196, 655, 817, 978
Sfr274I CTCGAG 1 cut(s) 1151
SinI GGWCC 2 cut(s) 422, 938
SlaI CTCGAG 1 cut(s) 1151
SmiMI CAYNNNNRTG 2 cut(s) 1015, 1140
SmlI CTYRAG 1 cut(s) 1151
SmoI CTYRAG 1 cut(s) 1151
Sse9I AATT 8 cut(s) 143, 270, 337, 580, 634, 650, 878, 1084
SsiI CCGC 2 cut(s) 239, 301
SspMI CTAG 3 cut(s) 9, 165, 1014
StyD4I CCNGG 7 cut(s) 174, 418, 425, 465, 483, 853, 1215
StyI CCWWGG 1 cut(s) 1013
TaaI ACNGT 2 cut(s) 364, 608
TaiI ACGT 3 cut(s) 133, 237, 786
TaqI TCGA 4 cut(s) 885, 1023, 1057, 1152
TasI AATT 8 cut(s) 143, 270, 337, 580, 634, 650, 878, 1084
TauI GCSGC 1 cut(s) 241
Tru1I TTAA 3 cut(s) 135, 491, 998
Tru9I TTAA 3 cut(s) 135, 491, 998
TscAI CASTG 2 cut(s) 449, 613
TseFI GTSAC 2 cut(s) 694, 726
TseI GCWGC 4 cut(s) 415, 530, 1121, 1239
Tsp45I GTSAC 2 cut(s) 694, 726
TspDTI ATGAA 4 cut(s) 368, 731, 827, 996
TspGWI ACGGA 3 cut(s) 59, 94, 1128
TspRI CASTG 2 cut(s) 449, 613
VpaK11BI GGWCC 2 cut(s) 422, 938
XagI CCTNNNNNAGG 1 cut(s) 196
XapI RAATTY 6 cut(s) 143, 580, 634, 650, 878, 1084
XceI RCATGY 1 cut(s) 558
XhoI CTCGAG 1 cut(s) 1151
XmaJI CCTAGG 1 cut(s) 1013
XmiI GTMKAC 2 cut(s) 85, 544
XspI CTAG 3 cut(s) 9, 165, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.