Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8302979.1

Orthogroup ID

OG0001645

Physical Location & Seq

Genomic Coordinates Forward (+)

145 .. 582

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8302979.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgtctttcaagagtatacttcaggatatgaaaggtgagtttgggagcatttcgaggaaagggtttgatgtgaaatttgggtatgggatgagatcgaggtctcaccgggtggttcaggatacctcgttcaggattgatgctttgaagcagagttgttgggctaacatgccgccggagcttttgagggatgtgttgatgagaattgaggcgtctgatgatacatggccttcgcggaagaatgtggtcgcttgtgctggtgtgtgcaagaattggagagagatcatgaaagagattgtcaagtccctagaagtttcggggaagctgacgtttcctatctccttgaagcaggtttgtgatgctggctcatatctgtgtctgattgtgttctgtcttttcctggacttgatttgcagattaagggaaagattcttatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

145

Amino Acids

16.66

Weight (kDa)

9.11

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47900 AT2G47900 AT2G47900
fragaria_vesca	FvH4_2g24790 FvH4_2g24790 FvH4_4g17170 FvH4_4g17170
malus_domestica	MD03G1277100.v1.1 MD11G1298700.v1.1 MD13G1174100.v1.1 MD16G1175400.v1.1
prunus_persica	Prupe.1G142500_v2.0.a1 Prupe.1G142500_v2.0.a1 Prupe.8G253000_v2.0.a1
pyrus_communis	pycom03g22080 pycom11g26220 pycom16g14710
rosa_chinensis	RchiOBHm_Chr4g0420951 RchiOBHm_Chr5g0065161 RchiOBHm_Chr6g0292621
rosa_laevigata	RLG00000007717 RLG00000012006 RLG00000035763
rosa_multiflora	Rmu_co8302979.1_g000001 Rmu_co8397385.1_g000001 Rmu_sc0000515.1_g000008 Rmu_sc0000956.1_g000003 Rmu_sc0009773.1_g000001 Rmu_sc0009911.1_g000003
rosa_roxburghii	Rroxscaffold_1G00016160 Rroxscaffold_5G00363320 Rroxscaffold_7G00174860
rosa_rugosa	Rorug04G0167300 Rorug04G0167400 Rorug04G0167500 Rorug05G0368900 Rorug06G0228400
rosa_samantha	Rh4AG228500 Rh4BG231700 Rh4CG243400 Rh4DG227100 Rh5DG454900 Rh6AG341700 Rh6BG349000 Rh6CG355900 Rh6DG342000
rosa_wichuraiana	Rw4G019780 Rw5G040100 Rw6G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	1 cut(s)	232
AciI	CCGC	2 cut(s)	170, 232
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	10, 145, 343
AjnI	CCWGG	1 cut(s)	396
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	2 cut(s)	178, 322
AluI	AGCT	2 cut(s)	178, 322
Alw26I	GTCTC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	47, 95
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	2 cut(s)	107, 398
BmrFI	CCNGG	2 cut(s)	107, 398
BmsI	GCATC	2 cut(s)	127, 346
BpuMI	CCSGG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	93, 193
BseLI	CCNNNNNNNGG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	106, 173
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	92, 279
BspACI	CCGC	2 cut(s)	170, 232
BspANI	GGCC	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	105
BssMI	GATC	2 cut(s)	92, 279
BssNAI	GTATAC	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	209
Bst1107I	GTATAC	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	398
BstACI	GRCGYC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	361
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	93, 193
BstFNI	CGCG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	95, 282
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	92, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	105, 396
BstUI	CGCG	1 cut(s)	232
BstZ17I	GTATAC	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	93, 193
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	282
CseI	GACGC	1 cut(s)	198
CviAII	CATG	3 cut(s)	166, 222, 283
CviJI	RGCY	5 cut(s)	161, 178, 226, 322, 363
CviKI_1	RGCY	5 cut(s)	161, 178, 226, 322, 363
DpnI	GATC	2 cut(s)	94, 281
DpnII	GATC	2 cut(s)	92, 279
DraIII	CACNNNGTG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	5
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	396
FaeI	CATG	3 cut(s)	169, 225, 286
FaiI	YATR	8 cut(s)	17, 29, 84, 167, 223, 284, 367, 433
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	3 cut(s)	165, 221, 282
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	2 cut(s)	100, 200
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	2 cut(s)	106, 173
HgaI	GACGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	169, 225, 286
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	2 cut(s)	106, 173
HphI	GGTGA	2 cut(s)	47, 95
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	2 cut(s)	214, 378
Hpy188III	TCNNGA	5 cut(s)	10, 23, 116, 130, 283
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	264, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	326
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	169, 225, 286
Kzo9I	GATC	2 cut(s)	92, 279
LmnI	GCTCC	2 cut(s)	45, 175
LweI	GCATC	2 cut(s)	127, 346
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	326
MalI	GATC	2 cut(s)	94, 281
MboI	GATC	2 cut(s)	92, 279
MboII	GAAGA	1 cut(s)	247
MluCI	AATT	3 cut(s)	74, 201, 268
MnlI	CCTC	5 cut(s)	48, 90, 133, 177, 199
MseI	TTAA	2 cut(s)	416, 436
MslI	CAYNNNNRTG	1 cut(s)	370
MspI	CCGG	2 cut(s)	106, 173
MspR9I	CCNGG	2 cut(s)	107, 398
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	2 cut(s)	92, 279
NlaIII	CATG	3 cut(s)	169, 225, 286
NspI	RCATGY	1 cut(s)	169
PagI	TCATGA	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	426
PfoI	TCCNGGA	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	416, 436
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	92, 279
ScrFI	CCNGG	2 cut(s)	107, 398
SetI	ASST	7 cut(s)	37, 101, 125, 180, 324, 329, 351
SfaNI	GCATC	2 cut(s)	127, 346
SmiMI	CAYNNNNRTG	1 cut(s)	370
Sse9I	AATT	3 cut(s)	74, 201, 268
SsiI	CCGC	2 cut(s)	170, 232
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	105, 396
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	2 cut(s)	53, 95
TasI	AATT	3 cut(s)	74, 201, 268
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	2 cut(s)	416, 436
Tru9I	TTAA	2 cut(s)	416, 436
TspDTI	ATGAA	2 cut(s)	44, 299
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.