Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8397385.1

Orthogroup ID

OG0001645

Physical Location & Seq

Genomic Coordinates Forward (+)

624 .. 1254

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8397385.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 631 bp

atgtctttcaagagtatacttcaggataagaaaggcgagtttggaagcagttggaggaaacgtcttaatctgaaatttagttatgggatgatatctaggtctcaccgggtggttcaggacacctcgttcaggattgatgctttgaagcagagttgttgggctaacgtgccgccggagcttttgagggaggtgttgatgagaattgaggcgtctgatgatacatggcctctgcggaaaaatgtggtcgcttgtgctggtgtgtgcaacaattggagggagatgatgaaagagattgtgaagtccccagaagtttcgggcaagctgacattcccaatctccttgaagcagcctggtcccagggacttccttctccaatgttatataaagcgtagcaaccaggcatattatcttttcctgggcttaaatcaagcttcaactgatgatgggaagttccttcttgctgcgagaaagcgtagacgcctaacatgcacagattacatcatctctctgaattctgaaaacgtgtcaaaagggaacagtgcctttgttggaaagctcagatcaaattttctgggtaccaaatttacaatctatgatgcgcaaccaagtaatactggagccaatgtcacta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

210

Amino Acids

23.89

Weight (kDa)

9.85

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47900 AT2G47900 AT2G47900
fragaria_vesca	FvH4_2g24790 FvH4_2g24790 FvH4_4g17170 FvH4_4g17170
malus_domestica	MD03G1277100.v1.1 MD11G1298700.v1.1 MD13G1174100.v1.1 MD16G1175400.v1.1
prunus_persica	Prupe.1G142500_v2.0.a1 Prupe.1G142500_v2.0.a1 Prupe.8G253000_v2.0.a1
pyrus_communis	pycom03g22080 pycom11g26220 pycom16g14710
rosa_chinensis	RchiOBHm_Chr4g0420951 RchiOBHm_Chr5g0065161 RchiOBHm_Chr6g0292621
rosa_laevigata	RLG00000007717 RLG00000012006 RLG00000035763
rosa_multiflora	Rmu_co8302979.1_g000001 Rmu_co8397385.1_g000001 Rmu_sc0000515.1_g000008 Rmu_sc0000956.1_g000003 Rmu_sc0009773.1_g000001 Rmu_sc0009911.1_g000003
rosa_roxburghii	Rroxscaffold_1G00016160 Rroxscaffold_5G00363320 Rroxscaffold_7G00174860
rosa_rugosa	Rorug04G0167300 Rorug04G0167400 Rorug04G0167500 Rorug05G0368900 Rorug06G0228400
rosa_samantha	Rh4AG228500 Rh4BG231700 Rh4CG243400 Rh4DG227100 Rh5DG454900 Rh6AG341700 Rh6BG349000 Rh6CG355900 Rh6DG342000
rosa_wichuraiana	Rw4G019780 Rw5G040100 Rw6G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	600
Acc65I	GGTACC	1 cut(s)	575
AccB1I	GGYRCC	1 cut(s)	575
AccI	GTMKAC	2 cut(s)	16, 475
AciI	CCGC	2 cut(s)	170, 232
AcsI	RAATTY	4 cut(s)	74, 511, 565, 581
AcuI	CTGAAG	1 cut(s)	5
AcyI	GRCGYC	2 cut(s)	209, 478
AdeI	CACNNNGTG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	1 cut(s)	129
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	4 cut(s)	10, 145, 343, 435
AjnI	CCWGG	4 cut(s)	349, 356, 396, 414
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	4 cut(s)	178, 322, 431, 556
AluI	AGCT	4 cut(s)	178, 322, 431, 556
Alw26I	GTCTC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	346, 461
ApoI	RAATTY	4 cut(s)	74, 511, 565, 581
Asp718I	GGTACC	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	358, 448
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	4 cut(s)	351, 358, 398, 416
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	3 cut(s)	170, 347, 462
BlsI	GCNGC	3 cut(s)	171, 348, 463
Bme1390I	CCNGG	5 cut(s)	107, 351, 358, 398, 416
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	3 cut(s)	355, 577, 619
BmrFI	CCNGG	5 cut(s)	107, 351, 358, 398, 416
BmsI	GCATC	2 cut(s)	127, 586
BpuMI	CCSGG	1 cut(s)	107
BsaHI	GRCGYC	2 cut(s)	209, 478
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	356, 357, 415
BsaXI	ACNNNNNCTCC	3 cut(s)	46, 76, 609
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	619
BseBI	CCWGG	4 cut(s)	351, 358, 398, 416
BseDI	CCNNGG	3 cut(s)	356, 357, 415
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	571
BseNI	ACTGG	1 cut(s)	619
BseXI	GCAGC	2 cut(s)	358, 448
BshFI	GGCC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	575
BsiSI	CCGG	2 cut(s)	106, 173
BslFI	GGGAC	3 cut(s)	286, 339, 374
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	3 cut(s)	286, 339, 374
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	560
BspACI	CCGC	2 cut(s)	170, 232
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	355, 577, 619
BspT107I	GGYRCC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	3 cut(s)	356, 357, 415
BssMI	GATC	1 cut(s)	560
BssNAI	GTATAC	1 cut(s)	17
BssNI	GRCGYC	2 cut(s)	209, 478
Bst1107I	GTATAC	1 cut(s)	17
Bst2UI	CCWGG	4 cut(s)	351, 358, 398, 416
Bst4CI	ACNGT	1 cut(s)	539
BstACI	GRCGYC	2 cut(s)	209, 478
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	557
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	1 cut(s)	563
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	560
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 486
BstNI	CCWGG	4 cut(s)	351, 358, 398, 416
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	5 cut(s)	105, 349, 356, 396, 414
BstV1I	GCAGC	2 cut(s)	358, 448
BstZ17I	GTATAC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	320
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	2 cut(s)	198, 486
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	2 cut(s)	222, 486
CviJI	RGCY	9 cut(s)	161, 178, 226, 322, 349, 420, 431, 556, 620
CviKI_1	RGCY	9 cut(s)	161, 178, 226, 322, 349, 420, 431, 556, 620
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	1 cut(s)	557
DpnI	GATC	1 cut(s)	562
DpnII	GATC	1 cut(s)	560
DraIII	CACNNNGTG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	5
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	511
EcoRII	CCWGG	4 cut(s)	349, 356, 396, 414
EcoRV	GATATC	1 cut(s)	93
FaeI	CATG	2 cut(s)	225, 489
FaiI	YATR	8 cut(s)	17, 84, 223, 381, 383, 403, 487, 594
FaqI	GGGAC	3 cut(s)	286, 339, 374
FatI	CATG	2 cut(s)	221, 485
FblI	GTMKAC	2 cut(s)	16, 475
Fnu4HI	GCNGC	3 cut(s)	170, 347, 462
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	3 cut(s)	170, 347, 462
FspBI	CTAG	1 cut(s)	96
FspI	TGCGCA	1 cut(s)	600
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	3 cut(s)	170, 347, 462
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	2 cut(s)	106, 173
HgaI	GACGC	2 cut(s)	198, 486
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	2 cut(s)	209, 478
Hin1II	CATG	2 cut(s)	225, 489
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HindIII	AAGCTT	1 cut(s)	429
HpaII	CCGG	2 cut(s)	106, 173
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	17, 476
Hpy188I	TCNGA	5 cut(s)	72, 214, 510, 517, 560
Hpy188III	TCNNGA	4 cut(s)	10, 23, 116, 130
Hpy8I	GTNNAC	2 cut(s)	17, 476
HpyAV	CCTTC	2 cut(s)	377, 464
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	3 cut(s)	61, 165, 522
HpyCH4V	TGCA	2 cut(s)	264, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 486
HpyF3I	CTNAG	1 cut(s)	557
HpySE526I	ACGT	3 cut(s)	61, 165, 522
Hsp92I	GRCGYC	2 cut(s)	209, 478
Hsp92II	CATG	2 cut(s)	225, 489
HspAI	GCGC	1 cut(s)	599
KpnI	GGTACC	1 cut(s)	579
Kzo9I	GATC	1 cut(s)	560
LmnI	GCTCC	2 cut(s)	175, 617
Lsp1109I	GCAGC	2 cut(s)	358, 448
LweI	GCATC	2 cut(s)	127, 586
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	3 cut(s)	61, 165, 522
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	1 cut(s)	562
MboI	GATC	1 cut(s)	560
MfeI	CAATTG	1 cut(s)	268
MluCI	AATT	6 cut(s)	74, 201, 268, 511, 565, 581
MmeI	TCCRAC	2 cut(s)	32, 529
MnlI	CCTC	7 cut(s)	48, 133, 177, 181, 199, 237, 267
MseI	TTAA	2 cut(s)	66, 422
MspI	CCGG	2 cut(s)	106, 173
MspR9I	CCNGG	5 cut(s)	107, 351, 358, 398, 416
MunI	CAATTG	1 cut(s)	268
MvaI	CCWGG	4 cut(s)	351, 358, 398, 416
MwoI	GCNNNNNNNGC	2 cut(s)	175, 486
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	560
NlaIII	CATG	2 cut(s)	225, 489
NlaIV	GGNNCC	3 cut(s)	355, 577, 619
NmuCI	GTSAC	1 cut(s)	625
NsbI	TGCGCA	1 cut(s)	600
NspI	RCATGY	1 cut(s)	489
PasI	CCCWGGG	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	171, 348, 463
Psp6I	CCWGG	4 cut(s)	349, 356, 396, 414
PspGI	CCWGG	4 cut(s)	349, 356, 396, 414
PspN4I	GGNNCC	3 cut(s)	355, 577, 619
PspPI	GGNCC	1 cut(s)	353
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	66, 422
SatI	GCNGC	3 cut(s)	170, 347, 462
Sau3AI	GATC	1 cut(s)	560
Sau96I	GGNCC	1 cut(s)	353
ScrFI	CCNGG	5 cut(s)	107, 351, 358, 398, 416
SfaNI	GCATC	2 cut(s)	127, 586
SinI	GGWCC	1 cut(s)	353
Sse9I	AATT	6 cut(s)	74, 201, 268, 511, 565, 581
SsiI	CCGC	2 cut(s)	170, 232
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	5 cut(s)	105, 349, 356, 396, 414
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	3 cut(s)	64, 168, 525
TasI	AATT	6 cut(s)	74, 201, 268, 511, 565, 581
TauI	GCSGC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	66, 422
Tru9I	TTAA	2 cut(s)	66, 422
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	2 cut(s)	346, 461
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	4 cut(s)	74, 511, 565, 581
XceI	RCATGY	1 cut(s)	489
XmiI	GTMKAC	2 cut(s)	16, 475
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.