Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009773.1

Orthogroup ID

OG0001645

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2002

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009773.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 805 bp

atgtcaatacggagcttaatccaggacatgaggttttcccggtcgcagcgggtggttcaggaccggtcggcggtggcggcgccggaggtgggcgactcggtgaagcagagctgctgggcacagatgcctcaggagcttctcagggaggttttgatgagaattgaggcttctgaggccgcctggccgccgcggaagagcgtcgtcgcctgcgccggagtctgccggagctggaggctgctgacgaaagagatcgttaaatcgcctgagctctccggaaagctcacctttcccatctccgtcaagcagcctggtccaagggatgaactgctacgatgctttataaaaaggaaccgctcgacccagacatattatctttacctcagtttgacccatgcattaactgatgagggaaagttcctacttgccgctcgcaagtataaacgccccacctgcacagactatattatctcactaaatggtgatgaaatgtcaaagggcagcagcaactatattggaaaactgaggtcaaattttttaggaaccaagttcaccatctttgatgggcagccaactgatgtgggatccaagtttactaaaagtcgatccactaggctagtgaatttgaaacaagtttcacctagggtccctgctggcaactatccagtggctcacatttcgtatgaactaaatatgttgggttccaggggtccaaggagaatgcaatgcaccatggatggcattcctgcctctgcgattcaacctggaggtgtagcacccacacaggcagagttttcaagtagtactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0008150 GO:0008289 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

268

Amino Acids

29.85

Weight (kDa)

9.89

Isoelectric Point (pI)

62.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47900 AT2G47900 AT2G47900
fragaria_vesca	FvH4_2g24790 FvH4_2g24790 FvH4_4g17170 FvH4_4g17170
malus_domestica	MD03G1277100.v1.1 MD11G1298700.v1.1 MD13G1174100.v1.1 MD16G1175400.v1.1
prunus_persica	Prupe.1G142500_v2.0.a1 Prupe.1G142500_v2.0.a1 Prupe.8G253000_v2.0.a1
pyrus_communis	pycom03g22080 pycom11g26220 pycom16g14710
rosa_chinensis	RchiOBHm_Chr4g0420951 RchiOBHm_Chr5g0065161 RchiOBHm_Chr6g0292621
rosa_laevigata	RLG00000007717 RLG00000012006 RLG00000035763
rosa_multiflora	Rmu_co8302979.1_g000001 Rmu_co8397385.1_g000001 Rmu_sc0000515.1_g000008 Rmu_sc0000956.1_g000003 Rmu_sc0009773.1_g000001 Rmu_sc0009911.1_g000003
rosa_roxburghii	Rroxscaffold_1G00016160 Rroxscaffold_5G00363320 Rroxscaffold_7G00174860
rosa_rugosa	Rorug04G0167300 Rorug04G0167400 Rorug04G0167500 Rorug05G0368900 Rorug06G0228400
rosa_samantha	Rh4AG228500 Rh4BG231700 Rh4CG243400 Rh4DG227100 Rh5DG454900 Rh6AG341700 Rh6BG349000 Rh6CG355900 Rh6DG342000
rosa_wichuraiana	Rw4G019780 Rw5G040100 Rw6G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AarI	CACCTGC	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	79
AccBSI	CCGCTC	2 cut(s)	354, 428
AccII	CGCG	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	9 cut(s)	49, 71, 77, 177, 185, 188, 190, 352, 426
AclWI	GGATC	3 cut(s)	576, 589, 597
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	2 cut(s)	529, 619
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	802
AfiI	CCNNNNNNNGG	2 cut(s)	70, 89
AgeI	ACCGGT	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	625, 758, 795
AjnI	CCWGG	5 cut(s)	21, 179, 307, 701, 760
AluBI	AGCT	6 cut(s)	15, 111, 136, 228, 268, 280
AluI	AGCT	6 cut(s)	15, 111, 136, 228, 268, 280
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	3 cut(s)	576, 589, 597
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	2 cut(s)	174, 182
ApeKI	GCWGC	7 cut(s)	46, 111, 235, 304, 498, 501, 565
ApoI	RAATTY	2 cut(s)	529, 619
AsiGI	ACCGGT	1 cut(s)	63
AspA2I	CCTAGG	1 cut(s)	638
AspLEI	GCGC	2 cut(s)	82, 212
AspS9I	GGNCC	4 cut(s)	61, 311, 643, 707
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	5 cut(s)	112, 274, 491, 541, 627
AvaII	GGWCC	4 cut(s)	61, 311, 643, 707
AvrII	CCTAGG	1 cut(s)	638
AxyI	CCTNAGG	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	121
BamHI	GGATCC	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	7 cut(s)	58, 98, 222, 316, 510, 513, 577
BccI	CCATC	4 cut(s)	299, 554, 560, 728
BciT130I	CCWGG	5 cut(s)	23, 181, 309, 703, 762
BcnI	CCSGG	1 cut(s)	40
BfaI	CTAG	3 cut(s)	609, 614, 639
BfoI	RGCGCY	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	458
BlnI	CCTAGG	1 cut(s)	638
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	6 cut(s)	23, 40, 181, 309, 703, 762
Bme18I	GGWCC	4 cut(s)	61, 311, 643, 707
BmgT120I	GGNCC	4 cut(s)	61, 311, 643, 707
BmiI	GGNNCC	8 cut(s)	81, 350, 541, 583, 644, 645, 700, 708
BmrFI	CCNGG	6 cut(s)	23, 40, 181, 309, 703, 762
BmsI	GCATC	2 cut(s)	114, 323
BpmI	CTGGAG	2 cut(s)	250, 783
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	6 cut(s)	188, 314, 638, 702, 710, 729
BsaWI	WCCGGW	2 cut(s)	63, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 89
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	662
Bse21I	CCTNAGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	728
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	5 cut(s)	23, 181, 309, 703, 762
BseDI	CCNNGG	6 cut(s)	188, 314, 638, 702, 710, 729
BseGI	GGATG	2 cut(s)	325, 739
BseLI	CCNNNNNNNGG	2 cut(s)	70, 89
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	6 cut(s)	143, 154, 162, 255, 394, 512
BseNI	ACTGG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	7 cut(s)	58, 98, 222, 316, 510, 513, 577
BseYI	CCCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	190
Bsh1285I	CGRYCG	2 cut(s)	44, 68
BshFI	GGCC	2 cut(s)	176, 184
BshNI	GGYRCC	1 cut(s)	79
BshTI	ACCGGT	1 cut(s)	63
BsiEI	CGRYCG	2 cut(s)	44, 68
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	6 cut(s)	40, 64, 83, 213, 223, 273
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	70, 89
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	2 cut(s)	723, 738
BsnI	GGCC	2 cut(s)	176, 184
Bsp1286I	GDGCHC	2 cut(s)	121, 270
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	3 cut(s)	249, 581, 602
Bsp19I	CCATGG	1 cut(s)	729
BspACI	CCGC	9 cut(s)	49, 71, 77, 177, 185, 188, 190, 352, 426
BspANI	GGCC	2 cut(s)	176, 184
BspCNI	CTCAG	6 cut(s)	142, 153, 163, 256, 393, 513
BspEI	TCCGGA	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	8 cut(s)	81, 350, 541, 583, 644, 645, 700, 708
BspMI	ACCTGC	1 cut(s)	458
BspPI	GGATC	3 cut(s)	576, 589, 597
BspQI	GCTCTTC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	79
BsrBI	CCGCTC	2 cut(s)	354, 428
BsrDI	GCAATG	1 cut(s)	728
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	6 cut(s)	188, 314, 638, 702, 710, 729
BssMI	GATC	3 cut(s)	249, 581, 602
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	4 cut(s)	314, 638, 710, 729
Bst2UI	CCWGG	5 cut(s)	23, 181, 309, 703, 762
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	208, 430, 652
BstDEI	CTNAG	6 cut(s)	129, 140, 171, 264, 380, 521
BstDSI	CCRYGG	2 cut(s)	188, 729
BstF5I	GGATG	2 cut(s)	325, 739
BstFNI	CGCG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	2 cut(s)	82, 212
BstKTI	GATC	3 cut(s)	252, 584, 605
BstMBI	GATC	3 cut(s)	249, 581, 602
BstMCI	CGRYCG	2 cut(s)	44, 68
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 133, 173, 450
BstNI	CCWGG	5 cut(s)	23, 181, 309, 703, 762
BstSCI	CCNGG	6 cut(s)	21, 38, 179, 307, 701, 760
BstSLI	GKGCMC	1 cut(s)	121
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	7 cut(s)	58, 98, 222, 316, 510, 513, 577
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	176, 184
BtgI	CCRYGG	2 cut(s)	188, 729
BtsCI	GGATG	2 cut(s)	325, 739
BtsIMutI	CAGTG	1 cut(s)	669
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	3 cut(s)	208, 430, 652
CfoI	GCGC	2 cut(s)	82, 212
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	4 cut(s)	61, 311, 643, 707
Cfr42I	CCGCGG	1 cut(s)	191
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	801
CspAI	ACCGGT	1 cut(s)	63
CspCI	CAANNNNNGTGG	2 cut(s)	558, 593
CviAII	CATG	3 cut(s)	28, 392, 730
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	6 cut(s)	129, 140, 171, 264, 380, 521
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	3 cut(s)	251, 583, 604
DpnII	GATC	3 cut(s)	249, 581, 602
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	4 cut(s)	314, 638, 710, 729
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	4 cut(s)	61, 311, 643, 707
Eco53kI	GAGCTC	1 cut(s)	268
Eco81I	CCTNAGG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRII	CCWGG	5 cut(s)	21, 179, 307, 701, 760
EcoT14I	CCWWGG	4 cut(s)	314, 638, 710, 729
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	4 cut(s)	314, 638, 710, 729
FaeI	CATG	3 cut(s)	31, 395, 733
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	3 cut(s)	27, 391, 729
FauI	CCCGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	332, 746
FriOI	GRGCYC	1 cut(s)	270
FspBI	CTAG	3 cut(s)	609, 614, 639
GlaI	GCGC	2 cut(s)	81, 211
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	2 cut(s)	250, 783
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	176, 184
HapII	CCGG	6 cut(s)	40, 64, 83, 213, 223, 273
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	82, 212
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	31, 395, 733
Hin6I	GCGC	2 cut(s)	80, 210
HinP1I	GCGC	2 cut(s)	80, 210
HinfI	GANTC	3 cut(s)	95, 216, 754
HpaII	CCGG	6 cut(s)	40, 64, 83, 213, 223, 273
HphI	GGTGA	5 cut(s)	112, 274, 491, 541, 627
Hpy166II	GTNNAC	2 cut(s)	549, 591
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	3 cut(s)	59, 131, 273
Hpy8I	GTNNAC	2 cut(s)	549, 591
Hpy99I	CGWCG	2 cut(s)	203, 206
HpyCH4V	TGCA	4 cut(s)	395, 453, 721, 726
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 133, 173, 450
HpyF3I	CTNAG	6 cut(s)	129, 140, 171, 264, 380, 521
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	31, 395, 733
HspAI	GCGC	2 cut(s)	80, 210
KasI	GGCGCC	1 cut(s)	79
KflI	GGGWCCC	1 cut(s)	643
Kpn2I	TCCGGA	1 cut(s)	272
KspI	CCGCGG	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	249, 581, 602
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	3 cut(s)	12, 133, 225
Lsp1109I	GCAGC	7 cut(s)	58, 98, 222, 316, 510, 513, 577
LweI	GCATC	2 cut(s)	114, 323
MaeI	CTAG	3 cut(s)	609, 614, 639
MalI	GATC	3 cut(s)	251, 583, 604
MbiI	CCGCTC	2 cut(s)	354, 428
MboI	GATC	3 cut(s)	249, 581, 602
MboII	GAAGA	1 cut(s)	205
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	2 cut(s)	121, 270
MluCI	AATT	3 cut(s)	159, 529, 619
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	89, 225
Mph1103I	ATGCAT	1 cut(s)	397
MroI	TCCGGA	1 cut(s)	272
MseI	TTAA	3 cut(s)	17, 255, 398
MspA1I	CMGCKG	2 cut(s)	49, 190
MspI	CCGG	6 cut(s)	40, 64, 83, 213, 223, 273
MspR9I	CCNGG	6 cut(s)	23, 40, 181, 309, 703, 762
Mva1269I	GAATGC	2 cut(s)	723, 738
MvaI	CCWGG	5 cut(s)	23, 181, 309, 703, 762
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	4 cut(s)	77, 133, 173, 450
NarI	GGCGCC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	729
NdeII	GATC	3 cut(s)	249, 581, 602
NlaIII	CATG	3 cut(s)	31, 395, 733
NlaIV	GGNNCC	8 cut(s)	81, 350, 541, 583, 644, 645, 700, 708
NsiI	ATGCAT	1 cut(s)	397
PaqCI	CACCTGC	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	188
PctI	GAATGC	2 cut(s)	723, 738
PfeI	GAWTC	1 cut(s)	754
PfoI	TCCNGGA	1 cut(s)	21
PinAI	ACCGGT	1 cut(s)	63
PleI	GAGTC	2 cut(s)	89, 224
PluTI	GGCGCC	1 cut(s)	83
PpsI	GAGTC	2 cut(s)	89, 224
PpuMI	RGGWCCY	1 cut(s)	643
PsiI	TTATAA	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	5 cut(s)	21, 179, 307, 701, 760
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	5 cut(s)	21, 179, 307, 701, 760
PspN4I	GGNNCC	8 cut(s)	81, 350, 541, 583, 644, 645, 700, 708
PspPI	GGNCC	4 cut(s)	61, 311, 643, 707
PspPPI	RGGWCCY	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	581
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
SacI	GAGCTC	1 cut(s)	270
SacII	CCGCGG	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	17, 255, 398
Sau3AI	GATC	3 cut(s)	249, 581, 602
Sau96I	GGNCC	4 cut(s)	61, 311, 643, 707
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	2 cut(s)	89, 225
ScrFI	CCNGG	6 cut(s)	23, 40, 181, 309, 703, 762
SduI	GDGCHC	2 cut(s)	121, 270
SfaNI	GCATC	2 cut(s)	114, 323
SfoI	GGCGCC	1 cut(s)	81
Sfr303I	CCGCGG	1 cut(s)	191
SgrBI	CCGCGG	1 cut(s)	191
SinI	GGWCC	4 cut(s)	61, 311, 643, 707
Sse9I	AATT	3 cut(s)	159, 529, 619
SsiI	CCGC	9 cut(s)	49, 71, 77, 177, 185, 188, 190, 352, 426
SspDI	GGCGCC	1 cut(s)	79
SspMI	CTAG	3 cut(s)	609, 614, 639
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	6 cut(s)	21, 38, 179, 307, 701, 760
StyI	CCWWGG	4 cut(s)	314, 638, 710, 729
TaqI	TCGA	2 cut(s)	356, 601
TasI	AATT	3 cut(s)	159, 529, 619
TatI	WGTACW	1 cut(s)	800
TauI	GCSGC	5 cut(s)	80, 179, 187, 190, 428
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	3 cut(s)	17, 255, 398
Tru9I	TTAA	3 cut(s)	17, 255, 398
TscAI	CASTG	1 cut(s)	669
TseI	GCWGC	7 cut(s)	46, 111, 235, 304, 498, 501, 565
TspDTI	ATGAA	3 cut(s)	336, 498, 696
TspGWI	ACGGA	2 cut(s)	25, 286
TspRI	CASTG	1 cut(s)	669
VpaK11BI	GGWCC	4 cut(s)	61, 311, 643, 707
XapI	RAATTY	2 cut(s)	529, 619
XmaJI	CCTAGG	1 cut(s)	638
XspI	CTAG	3 cut(s)	609, 614, 639
ZrmI	AGTACT	1 cut(s)	802
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.