Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

2251946 .. 2253597

Gene Structure 1652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGTCTGGATCAGGAATTTGCGCGAAGCGCGTGGTGGTTGATGCTCGTCACCACATGCTAGGTCGCTTGGCTTCGGTTGTAGCAAAGGATCTGCTCAATGGCCAGAATATTGTGGTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGCGGACTTGTTCGTCAGAAGATGAAGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTCCATATGACAAGATCAAGAGGATGGTCGTTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGGCTGGACACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAGGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGAGAAAGAAGCAACTTAGCAAACTCAGAGCTAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTGGATCTCAATTGGATGTTCTTGCACCCGTCAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

206

Amino Acids

23.47

Weight (kDa)

10.41

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	11 - 116	3.7e-23	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	159
AccII	CGCG	3 cut(s)	26, 33, 270
AciI	CCGC	3 cut(s)	150, 270, 316
AclWI	GGATC	3 cut(s)	19, 99, 592
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	465, 591
AfaI	GTAC	3 cut(s)	176, 262, 617
AfiI	CCNNNNNNNGG	3 cut(s)	130, 218, 322
AgsI	TTSAA	2 cut(s)	322, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	6 cut(s)	302, 481, 506, 512, 551, 580
AluI	AGCT	6 cut(s)	302, 481, 506, 512, 551, 580
Alw21I	GWGCWC	2 cut(s)	241, 508
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	3 cut(s)	19, 99, 592
AoxI	GGCC	2 cut(s)	103, 555
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	2 cut(s)	26, 33
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	508
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
Bbv12I	GWGCWC	2 cut(s)	241, 508
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	2 cut(s)	361, 479
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	401
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
BmcAI	AGTACT	1 cut(s)	617
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	458
BmsI	GCATC	2 cut(s)	34, 370
BpmI	CTGGAG	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	3 cut(s)	371, 415, 492
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 218, 322
BseGI	GGATG	2 cut(s)	372, 601
BseLI	CCNNNNNNNGG	3 cut(s)	130, 218, 322
BseMII	CTCAG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	387
Bsh1236I	CGCG	3 cut(s)	26, 33, 270
BshFI	GGCC	2 cut(s)	105, 557
BsiHKAI	GWGCWC	2 cut(s)	241, 508
BsiSI	CCGG	2 cut(s)	124, 147
BslI	CCNNNNNNNGG	3 cut(s)	130, 218, 322
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	105, 557
Bsp1286I	GDGCHC	2 cut(s)	241, 508
Bsp143I	GATC	5 cut(s)	11, 91, 249, 357, 584
BspACI	CCGC	3 cut(s)	150, 270, 316
BspANI	GGCC	2 cut(s)	105, 557
BspCNI	CTCAG	1 cut(s)	558
BspFNI	CGCG	3 cut(s)	26, 33, 270
BspLI	GGNNCC	1 cut(s)	458
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	3 cut(s)	19, 99, 592
BssMI	GATC	5 cut(s)	11, 91, 249, 357, 584
Bst4CI	ACNGT	2 cut(s)	265, 422
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	316, 405
BstDEI	CTNAG	4 cut(s)	291, 536, 545, 552
BstF5I	GGATG	2 cut(s)	372, 601
BstFNI	CGCG	3 cut(s)	26, 33, 270
BstHHI	GCGC	2 cut(s)	26, 33
BstKTI	GATC	5 cut(s)	14, 94, 252, 360, 587
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	5 cut(s)	11, 91, 249, 357, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	401
BstUI	CGCG	3 cut(s)	26, 33, 270
BstV1I	GCAGC	1 cut(s)	387
BstX2I	RGATCY	3 cut(s)	91, 249, 584
BstYI	RGATCY	3 cut(s)	91, 249, 584
BsuRI	GGCC	2 cut(s)	105, 557
BtsCI	GGATG	2 cut(s)	372, 601
Cac8I	GCNNGC	2 cut(s)	316, 405
CfoI	GCGC	2 cut(s)	26, 33
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	3 cut(s)	175, 261, 616
CviAII	CATG	2 cut(s)	58, 178
CviQI	GTAC	3 cut(s)	175, 261, 616
DdeI	CTNAG	4 cut(s)	291, 536, 545, 552
DpnI	GATC	5 cut(s)	13, 93, 251, 359, 586
DpnII	GATC	5 cut(s)	11, 91, 249, 357, 584
DrdI	GACNNNNNNGTC	1 cut(s)	159
DseDI	GACNNNNNNGTC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	506
Eco24I	GRGCYC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	506
Eco57I	CTGAAG	2 cut(s)	465, 591
EcoICRI	GAGCTC	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	508
FaeI	CATG	2 cut(s)	61, 181
FaiI	YATR	7 cut(s)	59, 179, 200, 275, 349, 351, 519
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FatI	CATG	2 cut(s)	57, 177
FauI	CCCGC	1 cut(s)	323
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	2 cut(s)	379, 608
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	1 cut(s)	401
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	25, 32
GluI	GCNGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	2 cut(s)	105, 557
HapII	CCGG	2 cut(s)	124, 147
HhaI	GCGC	2 cut(s)	26, 33
Hin1II	CATG	2 cut(s)	61, 181
Hin6I	GCGC	2 cut(s)	24, 31
HinP1I	GCGC	2 cut(s)	24, 31
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	2 cut(s)	124, 147
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	165, 445, 548
Hpy188III	TCNNGA	5 cut(s)	9, 15, 361, 377, 394
HpyAV	CCTTC	4 cut(s)	222, 316, 326, 556
HpyCH4III	ACNGT	2 cut(s)	265, 422
HpyCH4V	TGCA	3 cut(s)	308, 403, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	4 cut(s)	291, 536, 545, 552
Hsp92II	CATG	2 cut(s)	61, 181
HspAI	GCGC	2 cut(s)	24, 31
Kzo9I	GATC	5 cut(s)	11, 91, 249, 357, 584
LmnI	GCTCC	3 cut(s)	244, 299, 478
LpnPI	CCDG	8 cut(s)	119, 137, 160, 241, 389, 390, 393, 467
Lsp1109I	GCAGC	1 cut(s)	387
LweI	GCATC	2 cut(s)	34, 370
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	5 cut(s)	13, 93, 251, 359, 586
MboI	GATC	5 cut(s)	11, 91, 249, 357, 584
MboII	GAAGA	4 cut(s)	178, 244, 432, 584
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	3 cut(s)	91, 249, 584
MhlI	GDGCHC	2 cut(s)	241, 508
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	2 cut(s)	18, 590
MluNI	TGGCCA	1 cut(s)	105
MnlI	CCTC	5 cut(s)	124, 174, 253, 357, 390
Mox20I	TGGCCA	1 cut(s)	105
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	2 cut(s)	124, 147
MunI	CAATTG	1 cut(s)	590
MvnI	CGCG	3 cut(s)	26, 33, 270
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	5 cut(s)	11, 91, 249, 357, 584
NlaIII	CATG	2 cut(s)	61, 181
NlaIV	GGNNCC	1 cut(s)	458
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	3 cut(s)	91, 249, 584
RsaI	GTAC	3 cut(s)	176, 262, 617
RsaNI	GTAC	3 cut(s)	175, 261, 616
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	508
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	5 cut(s)	11, 91, 249, 357, 584
Sau96I	GGNCC	1 cut(s)	221
ScaI	AGTACT	1 cut(s)	617
SduI	GDGCHC	2 cut(s)	241, 508
SfaNI	GCATC	2 cut(s)	34, 370
SfcI	CTRYAG	1 cut(s)	401
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	3 cut(s)	386, 394, 507
SmoI	CTYRAG	3 cut(s)	386, 394, 507
Sse9I	AATT	2 cut(s)	18, 590
SsiI	CCGC	3 cut(s)	150, 270, 316
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	265, 422
TasI	AATT	2 cut(s)	18, 590
TatI	WGTACW	2 cut(s)	174, 615
TfiI	GAWTC	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	185, 215
TspGWI	ACGGA	3 cut(s)	179, 224, 234
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	62
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.