Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

19101309 .. 19102983

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G202800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGTCCGGCTCAGGGATCTGCGCGAAGCGAGTAGTGGTCGACGGACGACACCACATGCTCGGTCGTTTGGCGTCGGTCGTAGCCAAGGACCTCCTGAACGGCCAACGAATAGCCGTCGTACGCTGCGATGAGATCGCCATATCGGGAGGCCTCGTGAGGCAGAAGATGAAGTACATGAGATTCCGGCGAAAGCGCATGAACACCCAGCCCTCTCACGGCCCCATCCACTTCCGTTCTCCCGCCAAAATCTTCTGGCGAACTGTCCGAGGGATGATCCCGCACAAGACGAAGCGTGGAGCCGAGGCTCTGGCGCGGTTGAAGGCTTACGAGGGCATCCCTCCGCCGTATGACAAGACGAAGAGGATGGTTGTTCCTGACGCTCTCAAGGTCTTGAGGCTTCAGAAGGGCCACAAGTACTGCTTGTTGGGTCAGCTTTCGTCTGAGGTTGGATGGAACCATTTTGACACCATCAAGGCGCTAGAAGAGAAGAGAAAAGAAAGGGCTCAGTTGGCATATGAGAGGAAGAAGCAGCTAACCAAACTTAGGTTGAAGGCTGAAAAATCTGCAGAGGAGAAGCTTGGTTCCCAGCTCGATATCCTGGCTTCGGTTACCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

207

Amino Acids

23.47

Weight (kDa)

10.46

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	2 cut(s)	26, 316
AciI	CCGC	4 cut(s)	243, 281, 316, 344
AclWI	GGATC	2 cut(s)	26, 271
AcoI	YGGCCR	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	3 cut(s)	123, 176, 419
AfiI	CCNNNNNNNGG	4 cut(s)	15, 218, 546, 607
AgsI	TTSAA	2 cut(s)	322, 553
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	4 cut(s)	436, 535, 580, 592
AluI	AGCT	4 cut(s)	436, 535, 580, 592
AlwI	GGATC	2 cut(s)	26, 271
AoxI	GGCC	4 cut(s)	103, 151, 220, 409
ApeKI	GCWGC	2 cut(s)	126, 532
AspLEI	GCGC	4 cut(s)	26, 198, 316, 481
AspS9I	GGNCC	3 cut(s)	91, 221, 409
AvaII	GGWCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	508
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
BauI	CACGAG	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	113, 544
BccI	CCATC	4 cut(s)	233, 361, 447, 479
BceAI	ACGGC	4 cut(s)	101, 118, 235, 331
BciT130I	CCWGG	1 cut(s)	602
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	482
BisI	GCNGC	2 cut(s)	127, 533
BlsI	GCNGC	2 cut(s)	128, 534
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	602
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	91, 221, 409
BmiI	GGNNCC	4 cut(s)	223, 301, 458, 586
BmrFI	CCNGG	1 cut(s)	602
BmsI	GCATC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	13
BpuEI	CTTGAG	2 cut(s)	371, 415
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	87, 268, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 218, 546, 607
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	3 cut(s)	87, 268, 303
BseGI	GGATG	5 cut(s)	225, 279, 336, 372, 458
BseLI	CCNNNNNNNGG	4 cut(s)	15, 218, 546, 607
BseMII	CTCAG	3 cut(s)	27, 435, 521
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	2 cut(s)	113, 544
BseYI	CCCAGC	2 cut(s)	207, 588
Bsh1236I	CGCG	2 cut(s)	26, 316
Bsh1285I	CGRYCG	2 cut(s)	67, 81
BshFI	GGCC	4 cut(s)	105, 153, 222, 411
BsiEI	CGRYCG	2 cut(s)	67, 81
BsiSI	CCGG	2 cut(s)	9, 187
BsiWI	CGTACG	1 cut(s)	121
BslI	CCNNNNNNNGG	4 cut(s)	15, 218, 546, 607
BsnI	GGCC	4 cut(s)	105, 153, 222, 411
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	3 cut(s)	18, 135, 276
BspACI	CCGC	4 cut(s)	243, 281, 316, 344
BspANI	GGCC	4 cut(s)	105, 153, 222, 411
BspCNI	CTCAG	3 cut(s)	26, 436, 520
BspFNI	CGCG	2 cut(s)	26, 316
BspLI	GGNNCC	4 cut(s)	223, 301, 458, 586
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	2 cut(s)	26, 271
BssECI	CCNNGG	3 cut(s)	87, 268, 303
BssMI	GATC	3 cut(s)	18, 135, 276
BssNI	GRCGYC	1 cut(s)	74
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	3 cut(s)	356, 480, 485
BstACI	GRCGYC	1 cut(s)	74
BstDEI	CTNAG	4 cut(s)	13, 444, 507, 545
BstEII	GGTNACC	1 cut(s)	610
BstF5I	GGATG	5 cut(s)	225, 279, 336, 372, 458
BstFNI	CGCG	2 cut(s)	26, 316
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	4 cut(s)	26, 198, 316, 481
BstKTI	GATC	3 cut(s)	21, 138, 279
BstMBI	GATC	3 cut(s)	18, 135, 276
BstMCI	CGRYCG	2 cut(s)	67, 81
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	61
BstPI	GGTNACC	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	600
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	2 cut(s)	26, 316
BstV1I	GCAGC	2 cut(s)	113, 544
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	105, 153, 222, 411
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	5 cut(s)	225, 279, 336, 372, 458
CfoI	GCGC	4 cut(s)	26, 198, 316, 481
Cfr13I	GGNCC	3 cut(s)	91, 221, 409
CseI	GACGC	2 cut(s)	63, 389
Csp6I	GTAC	3 cut(s)	122, 175, 418
CviAII	CATG	3 cut(s)	58, 178, 199
CviQI	GTAC	3 cut(s)	122, 175, 418
DdeI	CTNAG	4 cut(s)	13, 444, 507, 545
DpnI	GATC	3 cut(s)	20, 137, 278
DpnII	GATC	3 cut(s)	18, 135, 276
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	356, 480, 485
EarI	CTCTTC	3 cut(s)	356, 480, 485
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	508
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	610
EcoO109I	RGGNCCY	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	600
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	61, 181, 202
FaiI	YATR	7 cut(s)	59, 143, 179, 200, 351, 517, 519
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	3 cut(s)	57, 177, 198
FauI	CCCGC	2 cut(s)	250, 288
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	127, 533
FokI	GGATG	5 cut(s)	212, 286, 323, 379, 465
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	2 cut(s)	127, 533
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	4 cut(s)	25, 197, 315, 480
GluI	GCNGC	2 cut(s)	127, 533
GsaI	CCCAGC	2 cut(s)	211, 592
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	4 cut(s)	105, 153, 222, 411
HapII	CCGG	2 cut(s)	9, 187
HgaI	GACGC	2 cut(s)	63, 389
HhaI	GCGC	4 cut(s)	26, 198, 316, 481
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	61, 181, 202
Hin6I	GCGC	4 cut(s)	24, 196, 314, 479
HinP1I	GCGC	4 cut(s)	24, 196, 314, 479
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	2 cut(s)	9, 187
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	269, 405, 445
Hpy188III	TCNNGA	5 cut(s)	97, 147, 157, 377, 394
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	3 cut(s)	47, 79, 122
HpyAV	CCTTC	3 cut(s)	316, 400, 547
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	4 cut(s)	13, 444, 507, 545
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	61, 181, 202
HspAI	GCGC	4 cut(s)	24, 196, 314, 479
Kzo9I	GATC	3 cut(s)	18, 135, 276
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	2 cut(s)	113, 544
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	3 cut(s)	20, 137, 278
MboI	GATC	3 cut(s)	18, 135, 276
MboII	GAAGA	6 cut(s)	178, 244, 373, 497, 502, 538
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	508
MmeI	TCCRAC	1 cut(s)	430
MseI	TTAA	1 cut(s)	619
MspI	CCGG	2 cut(s)	9, 187
MspR9I	CCNGG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	602
MvnI	CGCG	2 cut(s)	26, 316
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	3 cut(s)	18, 135, 276
NlaIII	CATG	3 cut(s)	61, 181, 202
NlaIV	GGNNCC	4 cut(s)	223, 301, 458, 586
NmeAIII	GCCGAG	1 cut(s)	328
NspI	RCATGY	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	183
Pfl23II	CGTACG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	128, 534
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	600
PspEI	GGTNACC	1 cut(s)	610
PspFI	CCCAGC	2 cut(s)	207, 588
PspGI	CCWGG	1 cut(s)	600
PspLI	CGTACG	1 cut(s)	121
PspN4I	GGNNCC	4 cut(s)	223, 301, 458, 586
PspPI	GGNCC	3 cut(s)	91, 221, 409
PspPPI	RGGWCCY	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	3 cut(s)	123, 176, 419
RsaNI	GTAC	3 cut(s)	122, 175, 418
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	619
SatI	GCNGC	2 cut(s)	127, 533
Sau3AI	GATC	3 cut(s)	18, 135, 276
Sau96I	GGNCC	3 cut(s)	91, 221, 409
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	9 cut(s)	96, 393, 438, 450, 537, 551, 582, 594, 617
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	386, 394
SmoI	CTYRAG	2 cut(s)	386, 394
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	4 cut(s)	243, 281, 316, 344
SspMI	CTAG	1 cut(s)	482
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	2 cut(s)	42, 594
TaqII	GACCGA	2 cut(s)	53, 67
TatI	WGTACW	2 cut(s)	174, 417
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	619
Tru9I	TTAA	1 cut(s)	619
TseI	GCWGC	2 cut(s)	126, 532
TspDTI	ATGAA	2 cut(s)	185, 215
TspGWI	ACGGA	2 cut(s)	60, 224
VpaK11BI	GGWCC	1 cut(s)	91
XceI	RCATGY	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	482
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.