Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

33400617 .. 33403119

Gene Structure 2503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG193400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTGTCCGGGTCAGGGATCTGCGCCAAGCGCGTGGTGGTGGACGCTCGTCACCACATGTTGGGCCGCTTGGCTTCCATTATCGCCAAGGAGCTCCTCAACGGCCAGAAGGTCGTCGTCGTCCGCTGCGAGGAGATCTGCATCTCCGGTGGCTTGGTCAGGCAGAAGATGAAGTACATGAGGTTCTTGCGTAAGCGCATGAACACCAAGCCCTCTCACGGCCCCATTCACTTCCGTGCCCCCGCTAAGATCCTCTGGCGCACAATCCGTGGGATGATTCCACACAAGACAAAGCGTGGAGCTGCTGCGCTTGCTCGGCTGAAGGCCTATGAGGGAATTCCACCTCCTTATGATAAGATTAAGAGGATGGTCATTCCCGATGCTCTCAAGGTCTTGAGGCTTCAAGCAGGACACAAATACTGTTTGTTGGGCAAGCTTTCATCGGAGGTTGGATGGAACCACTATGACACTATCAGGGTGAGAATTGCTTCTACTGTAGTCTTAATTTTATCTGGTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

174

Amino Acids

19.47

Weight (kDa)

10.79

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	11 - 115	6.9e-23	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccII	CGCG	1 cut(s)	33
AciI	CCGC	3 cut(s)	67, 124, 243
AclWI	GGATC	2 cut(s)	26, 244
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	404
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	3 cut(s)	94, 302, 436
AluI	AGCT	3 cut(s)	94, 302, 436
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	26, 244
AoxI	GGCC	4 cut(s)	64, 103, 220, 324
ApeKI	GCWGC	3 cut(s)	126, 302, 305
ApoI	RAATTY	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	487
AspLEI	GCGC	5 cut(s)	26, 33, 198, 261, 310
AspS9I	GGNCC	2 cut(s)	64, 221
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	44, 490
BaeGI	GKGCMC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	113, 289, 292
BccI	CCATC	2 cut(s)	361, 447
BceAI	ACGGC	2 cut(s)	118, 235
BcnI	CCSGG	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	495
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	4 cut(s)	67, 127, 303, 306
BlsI	GCNGC	4 cut(s)	68, 128, 304, 307
Bme1390I	CCNGG	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	64, 221
BmiI	GGNNCC	2 cut(s)	223, 458
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	150, 370
BoxI	GACNNNNGTC	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	371, 415
BpuMI	CCSGG	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	87, 268
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	87, 268
BseGI	GGATG	3 cut(s)	279, 372, 458
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
BseRI	GAGGAG	2 cut(s)	86, 146
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	113, 289, 292
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	66, 105, 222, 326
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	9, 147
BslI	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
BsnI	GGCC	4 cut(s)	66, 105, 222, 326
Bsp1286I	GDGCHC	2 cut(s)	96, 241
Bsp143I	GATC	3 cut(s)	18, 135, 249
BspACI	CCGC	3 cut(s)	67, 124, 243
BspANI	GGCC	4 cut(s)	66, 105, 222, 326
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	223, 458
BspPI	GGATC	2 cut(s)	26, 244
BssECI	CCNNGG	2 cut(s)	87, 268
BssMI	GATC	3 cut(s)	18, 135, 249
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	422, 496
BstC8I	GCNNGC	2 cut(s)	312, 434
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	279, 372, 458
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	5 cut(s)	26, 33, 198, 261, 310
BstKTI	GATC	3 cut(s)	21, 138, 252
BstMBI	GATC	3 cut(s)	18, 135, 249
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 311, 316
BstNSI	RCATGY	1 cut(s)	61
BstPAI	GACNNNNGTC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	113, 289, 292
BstX2I	RGATCY	3 cut(s)	18, 135, 249
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	3 cut(s)	18, 135, 249
BsuRI	GGCC	4 cut(s)	66, 105, 222, 326
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	3 cut(s)	279, 372, 458
Cac8I	GCNNGC	2 cut(s)	312, 434
CfoI	GCGC	5 cut(s)	26, 33, 198, 261, 310
Cfr13I	GGNCC	2 cut(s)	64, 221
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	3 cut(s)	58, 178, 199
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	3 cut(s)	20, 137, 251
DpnII	GATC	3 cut(s)	18, 135, 249
EaeI	YGGCCR	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	61, 181, 202
FaiI	YATR	6 cut(s)	59, 179, 200, 330, 351, 465
FatI	CATG	3 cut(s)	57, 177, 198
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	67, 127, 303, 306
FokI	GGATG	3 cut(s)	286, 379, 465
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	67, 127, 303, 306
GlaI	GCGC	5 cut(s)	25, 32, 197, 260, 309
GluI	GCNGC	4 cut(s)	67, 127, 303, 306
HaeIII	GGCC	4 cut(s)	66, 105, 222, 326
HapII	CCGG	2 cut(s)	9, 147
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	5 cut(s)	26, 33, 198, 261, 310
Hin1II	CATG	3 cut(s)	61, 181, 202
Hin6I	GCGC	5 cut(s)	24, 31, 196, 259, 308
HinP1I	GCGC	5 cut(s)	24, 31, 196, 259, 308
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	2 cut(s)	9, 147
HphI	GGTGA	2 cut(s)	44, 490
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	2 cut(s)	377, 394
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	2 cut(s)	103, 316
HpyCH4III	ACNGT	2 cut(s)	422, 496
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 311, 316
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	61, 181, 202
HspAI	GCGC	5 cut(s)	24, 31, 196, 259, 308
Kzo9I	GATC	3 cut(s)	18, 135, 249
LmnI	GCTCC	3 cut(s)	91, 99, 299
LpnPI	CCDG	8 cut(s)	22, 119, 145, 160, 241, 393, 460, 498
Lsp1109I	GCAGC	3 cut(s)	113, 289, 292
LweI	GCATC	2 cut(s)	150, 370
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	3 cut(s)	20, 137, 251
MboI	GATC	3 cut(s)	18, 135, 249
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	3 cut(s)	18, 135, 249
MhlI	GDGCHC	2 cut(s)	96, 241
MluCI	AATT	3 cut(s)	336, 483, 504
MmeI	TCCRAC	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	487
MseI	TTAA	2 cut(s)	360, 503
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	2 cut(s)	9, 147
MspR9I	CCNGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	30, 311, 316
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	18, 135, 249
NlaIII	CATG	3 cut(s)	61, 181, 202
NlaIV	GGNNCC	2 cut(s)	223, 458
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	326
PciI	ACATGT	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	68, 128, 304, 307
PscI	ACATGT	1 cut(s)	57
PshAI	GACNNNNGTC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	223, 458
PspPI	GGNCC	2 cut(s)	64, 221
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
PsuI	RGATCY	3 cut(s)	18, 135, 249
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	360, 503
SatI	GCNGC	4 cut(s)	67, 127, 303, 306
Sau3AI	GATC	3 cut(s)	18, 135, 249
Sau96I	GGNCC	2 cut(s)	64, 221
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	96, 241
SetI	ASST	9 cut(s)	96, 114, 185, 304, 346, 393, 438, 450, 523
SfaNI	GCATC	2 cut(s)	150, 370
SfcI	CTRYAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	386, 394
SmoI	CTYRAG	2 cut(s)	386, 394
Sse9I	AATT	3 cut(s)	336, 483, 504
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	3 cut(s)	67, 124, 243
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	422, 496
TasI	AATT	3 cut(s)	336, 483, 504
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	2 cut(s)	360, 503
Tru9I	TTAA	2 cut(s)	360, 503
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	3 cut(s)	126, 302, 305
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	185, 215, 429
TspGWI	ACGGA	2 cut(s)	224, 257
Van91I	CCANNNNNTGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.