Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

9064525 .. 9066180

Gene Structure 1656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTCGTTGTTGACGCACGTCACCATATGTGTGGTCGTCTTGCTTCGATCATAGCTAAAGAGTTGCTCAATGGACAGAGTGTTGTTGTTGTCCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTCGTCAGAAGATGAAGTACATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATGGTCCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGGCTGGTCACAAGTACTGCTTGTTGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCATCAAGGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTTTGTATGAGCGTAAGAAGCAACTCACCAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTGGATCCCAGCTCGATGTTCTTGCATCGATCAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

206

Amino Acids

23.46

Weight (kDa)

10.35

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	10 - 115	2.1e-23	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	579, 592
AcuI	CTGAAG	2 cut(s)	386, 465
AfaI	GTAC	5 cut(s)	176, 262, 339, 419, 617
AfiI	CCNNNNNNNGG	4 cut(s)	130, 218, 270, 546
AgsI	TTSAA	2 cut(s)	27, 322
AjiI	CACGTC	1 cut(s)	50
AluBI	AGCT	5 cut(s)	86, 481, 512, 544, 592
AluI	AGCT	5 cut(s)	86, 481, 512, 544, 592
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	579, 592
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	2 cut(s)	302, 305
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	44, 499, 529
AvaII	GGWCC	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	584
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	289, 292
BccI	CCATC	1 cut(s)	479
BcgI	CGANNNNNNTGC	4 cut(s)	548, 582, 584, 618
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
BmcAI	AGTACT	2 cut(s)	419, 617
Bme18I	GGWCC	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	458, 586
BmsI	GCATC	2 cut(s)	370, 614
BoxI	GACNNNNGTC	2 cut(s)	48, 436
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	2 cut(s)	371, 503
Bsa29I	ATCGAT	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 218, 270, 546
BseCI	ATCGAT	1 cut(s)	608
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	4 cut(s)	130, 218, 270, 546
BseMII	CTCAG	1 cut(s)	559
BseRI	GAGGAG	2 cut(s)	146, 587
BseXI	GCAGC	2 cut(s)	289, 292
BseYI	CCCAGC	1 cut(s)	588
BshFI	GGCC	1 cut(s)	557
BshVI	ATCGAT	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	4 cut(s)	130, 218, 270, 546
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	78, 249, 584, 609
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	1 cut(s)	558
BspDI	ATCGAT	1 cut(s)	608
BspLI	GGNNCC	2 cut(s)	458, 586
BspPI	GGATC	2 cut(s)	579, 592
BssMI	GATC	4 cut(s)	78, 249, 584, 609
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	485
BstDEI	CTNAG	3 cut(s)	188, 246, 545
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	4 cut(s)	81, 252, 587, 612
BstMBI	GATC	4 cut(s)	78, 249, 584, 609
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 529
BstPAI	GACNNNNGTC	2 cut(s)	48, 436
BstV1I	GCAGC	2 cut(s)	289, 292
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	2 cut(s)	249, 584
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	2 cut(s)	249, 584
Bsu15I	ATCGAT	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	557
BsuTUI	ATCGAT	1 cut(s)	608
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	608
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	5 cut(s)	175, 261, 338, 418, 616
CviAII	CATG	3 cut(s)	178, 199, 218
CviJI	RGCY	9 cut(s)	86, 400, 407, 453, 481, 512, 544, 557, 592
CviKI_1	RGCY	9 cut(s)	86, 400, 407, 453, 481, 512, 544, 557, 592
CviQI	GTAC	5 cut(s)	175, 261, 338, 418, 616
DdeI	CTNAG	3 cut(s)	188, 246, 545
DpnI	GATC	4 cut(s)	80, 251, 586, 611
DpnII	GATC	4 cut(s)	78, 249, 584, 609
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	386, 465
FaeI	CATG	3 cut(s)	181, 202, 221
FaiI	YATR	9 cut(s)	22, 57, 59, 83, 179, 200, 219, 351, 519
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	3 cut(s)	177, 198, 217
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	303, 306
GluI	GCNGC	2 cut(s)	303, 306
GsaI	CCCAGC	1 cut(s)	592
HaeIII	GGCC	1 cut(s)	557
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	181, 202, 221
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	1 cut(s)	277
HphI	GGTGA	3 cut(s)	44, 499, 529
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	125, 165, 445
Hpy188III	TCNNGA	2 cut(s)	361, 377
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	222, 316, 556
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	3 cut(s)	49, 316, 433
HpyCH4V	TGCA	3 cut(s)	314, 569, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 529
HpyF3I	CTNAG	3 cut(s)	188, 246, 545
HpySE526I	ACGT	3 cut(s)	49, 316, 433
Hsp92II	CATG	3 cut(s)	181, 202, 221
Kzo9I	GATC	4 cut(s)	78, 249, 584, 609
LmnI	GCTCC	2 cut(s)	244, 478
LpnPI	CCDG	8 cut(s)	132, 241, 389, 390, 393, 439, 532, 602
Lsp1109I	GCAGC	2 cut(s)	289, 292
LweI	GCATC	2 cut(s)	370, 614
MaeII	ACGT	3 cut(s)	49, 316, 433
MaeIII	GTNAC	3 cut(s)	50, 410, 504
MalI	GATC	4 cut(s)	80, 251, 586, 611
MboI	GATC	4 cut(s)	78, 249, 584, 609
MboII	GAAGA	4 cut(s)	178, 244, 432, 502
MflI	RGATCY	2 cut(s)	249, 584
MhlI	GDGCHC	1 cut(s)	241
MnlI	CCTC	8 cut(s)	124, 174, 325, 354, 390, 478, 495, 565
MslI	CAYNNNNRTG	2 cut(s)	60, 234
MwoI	GCNNNNNNNGC	2 cut(s)	311, 529
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	4 cut(s)	78, 249, 584, 609
NlaIII	CATG	3 cut(s)	181, 202, 221
NlaIV	GGNNCC	2 cut(s)	458, 586
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	3 cut(s)	50, 410, 504
PfeI	GAWTC	1 cut(s)	277
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	304, 307
PshAI	GACNNNNGTC	2 cut(s)	48, 436
PspFI	CCCAGC	1 cut(s)	588
PspN4I	GGNNCC	2 cut(s)	458, 586
PspPI	GGNCC	1 cut(s)	221
PsuI	RGATCY	2 cut(s)	249, 584
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	5 cut(s)	176, 262, 339, 419, 617
RsaNI	GTAC	5 cut(s)	175, 261, 338, 418, 616
RseI	CAYNNNNRTG	2 cut(s)	60, 234
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	4 cut(s)	78, 249, 584, 609
Sau96I	GGNCC	1 cut(s)	221
ScaI	AGTACT	2 cut(s)	419, 617
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	2 cut(s)	370, 614
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	60, 234
SmlI	CTYRAG	2 cut(s)	386, 482
SmoI	CTYRAG	2 cut(s)	386, 482
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	3 cut(s)	52, 319, 436
TaqI	TCGA	3 cut(s)	77, 594, 608
TatI	WGTACW	3 cut(s)	174, 417, 615
TfiI	GAWTC	1 cut(s)	277
TseFI	GTSAC	3 cut(s)	50, 410, 504
TseI	GCWGC	2 cut(s)	302, 305
Tsp45I	GTSAC	3 cut(s)	50, 410, 504
TspDTI	ATGAA	3 cut(s)	185, 215, 218
TspGWI	ACGGA	2 cut(s)	224, 231
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	221
ZrmI	AGTACT	2 cut(s)	419, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.