Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

17558800 .. 17560509

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g14160.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTTGTTCGTATGCGGAATGTTGTTCTACCATCCAATTCAATAAAAAGGCCAATTACTGGGCCAATACAAAACCTTATTAAAAATGGTCTAAGCCCAATAGTCGGCCTCAAAAAGAGTACAGGGCACGCGGTTGACAAAAACCCTAGCTACGAACCTCCCCTTTTATATATACTCGCACGGAGTGAAGGTGAGAGAGAAACAGAGAGCGAGAAAATGGTGTCCGGCTCAGGAATCTGTGCGAAGCGAGTGGTGGTGGACGGGCGCCACCACATGCTCGGTCGTCTGGCGGCTGTCGTGGCCAAGGACCTTCTGAACGGCCAGCCGATCGCGGTCGTGCGCGCTGAGCAAATCGCCATATCAGGCGGTCTGGTGAGGCAGAAAATGAAGTACATGAGGTTTCTCAGGAAGCGCATGAACACCCAGCCCTCTCACGGCCCCATCCACTACCACTCTCCCGCCAAAATCTTCTGGCGCACCGTCCGAGGGATGATCCCGCACAAGACTAAGCGCGGAGCTGAGGCTCTGGCGAGGCTGAAGGTTTACGAGGGCATCCCGCCGCCGTATGACAAGACGAAGAGGATGGTGGTTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAGGGCCACAAATACTGCTTGTTGGGTCAGCTTTCATCCGAGGTCGGATGGAACCATTATGACACAATCAAGGAGCTGGAGAACAAGAGAAAAGAAAGGGCTCAGTTGGCATATGAGAGGAAGAGGCAGCTAACCAAACTTAGGTTGAAGTCTGAAAAATCTGCAGAGGAGAAGATTGGTTCCCAGCTTGAACTCCTTTCTTCGGTGACATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

279

Amino Acids

31.44

Weight (kDa)

10.27

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	264
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	4 cut(s)	131, 332, 342, 513
AclWI	GGATC	1 cut(s)	487
AcoI	YGGCCR	2 cut(s)	300, 319
AcuI	CTGAAG	2 cut(s)	557, 602
AcyI	GRCGYC	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	2 cut(s)	121, 392
AfiI	CCNNNNNNNGG	6 cut(s)	59, 104, 434, 486, 762, 823
AgsI	TTSAA	3 cut(s)	42, 769, 812
AluBI	AGCT	6 cut(s)	150, 518, 652, 697, 751, 808
AluI	AGCT	6 cut(s)	150, 518, 652, 697, 751, 808
AlwI	GGATC	1 cut(s)	487
AoxI	GGCC	7 cut(s)	50, 62, 106, 300, 319, 436, 625
ApeKI	GCWGC	1 cut(s)	748
AspLEI	GCGC	6 cut(s)	267, 342, 344, 414, 477, 513
AspS9I	GGNCC	4 cut(s)	62, 307, 437, 625
AsuHPI	GGTGA	2 cut(s)	203, 385
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	724
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	760
BccI	CCATC	4 cut(s)	40, 449, 577, 663
BceAI	ACGGC	3 cut(s)	334, 451, 547
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	783
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	3 cut(s)	291, 560, 749
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	3 cut(s)	292, 561, 750
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	4 cut(s)	62, 307, 437, 625
BmiI	GGNNCC	5 cut(s)	266, 439, 591, 674, 802
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	561, 586
BmuI	ACTGGG	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	719
Bpu10I	CCTNAGC	2 cut(s)	229, 519
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	303, 484, 660
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	6 cut(s)	59, 104, 434, 486, 762, 823
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	303, 484, 660
BseGI	GGATG	7 cut(s)	32, 441, 495, 552, 588, 656, 674
BseLI	CCNNNNNNNGG	6 cut(s)	59, 104, 434, 486, 762, 823
BseMII	CTCAG	5 cut(s)	243, 336, 418, 510, 737
BseNI	ACTGG	1 cut(s)	64
BsePI	GCGCGC	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	803
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	760
BseYI	CCCAGC	2 cut(s)	423, 804
Bsh1236I	CGCG	4 cut(s)	131, 332, 342, 513
Bsh1285I	CGRYCG	3 cut(s)	283, 330, 336
BshFI	GGCC	7 cut(s)	52, 64, 108, 302, 321, 438, 627
BshNI	GGYRCC	1 cut(s)	264
BsiEI	CGRYCG	3 cut(s)	283, 330, 336
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	6 cut(s)	59, 104, 434, 486, 762, 823
BsnI	GGCC	7 cut(s)	52, 64, 108, 302, 321, 438, 627
Bsp1286I	GDGCHC	2 cut(s)	129, 724
Bsp143I	GATC	2 cut(s)	327, 492
Bsp1720I	GCTNAGC	1 cut(s)	345
BspANI	GGCC	7 cut(s)	52, 64, 108, 302, 321, 438, 627
BspCNI	CTCAG	5 cut(s)	242, 337, 417, 511, 736
BspFNI	CGCG	4 cut(s)	131, 332, 342, 513
BspLI	GGNNCC	5 cut(s)	266, 439, 591, 674, 802
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	303, 484, 660
BssHII	GCGCGC	1 cut(s)	340
BssMI	GATC	2 cut(s)	327, 492
BssNI	GRCGYC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	2 cut(s)	572, 737
BstACI	GRCGYC	1 cut(s)	265
BstC8I	GCNNGC	3 cut(s)	129, 323, 342
BstDEI	CTNAG	8 cut(s)	92, 229, 345, 404, 507, 519, 723, 761
BstF5I	GGATG	7 cut(s)	32, 441, 495, 552, 588, 656, 674
BstFNI	CGCG	4 cut(s)	131, 332, 342, 513
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	6 cut(s)	267, 342, 344, 414, 477, 513
BstKTI	GATC	2 cut(s)	330, 495
BstMBI	GATC	2 cut(s)	327, 492
BstMCI	CGRYCG	3 cut(s)	283, 330, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 346, 728
BstNSI	RCATGY	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	4 cut(s)	131, 332, 342, 513
BstV1I	GCAGC	1 cut(s)	760
BsuRI	GGCC	7 cut(s)	52, 64, 108, 302, 321, 438, 627
BtsCI	GGATG	7 cut(s)	32, 441, 495, 552, 588, 656, 674
Cac8I	GCNNGC	3 cut(s)	129, 323, 342
CfoI	GCGC	6 cut(s)	267, 342, 344, 414, 477, 513
Cfr13I	GGNCC	4 cut(s)	62, 307, 437, 625
Csp6I	GTAC	2 cut(s)	120, 391
CviAII	CATG	3 cut(s)	274, 394, 415
CviQI	GTAC	2 cut(s)	120, 391
DdeI	CTNAG	8 cut(s)	92, 229, 345, 404, 507, 519, 723, 761
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	2 cut(s)	329, 494
DpnII	GATC	2 cut(s)	327, 492
DraIII	CACNNNGTG	1 cut(s)	185
EaeI	YGGCCR	2 cut(s)	300, 319
Eam1104I	CTCTTC	2 cut(s)	572, 737
EarI	CTCTTC	2 cut(s)	572, 737
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	557, 602
EcoO109I	RGGNCCY	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	724
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	3 cut(s)	277, 397, 418
FatI	CATG	3 cut(s)	273, 393, 414
FauI	CCCGC	3 cut(s)	466, 504, 564
FauNDI	CATATG	1 cut(s)	733
Fnu4HI	GCNGC	3 cut(s)	291, 560, 749
FokI	GGATG	7 cut(s)	19, 428, 502, 539, 595, 643, 681
FriOI	GRGCYC	1 cut(s)	724
Fsp4HI	GCNGC	3 cut(s)	291, 560, 749
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	6 cut(s)	266, 341, 343, 413, 476, 512
GluI	GCNGC	3 cut(s)	291, 560, 749
GsaI	CCCAGC	2 cut(s)	427, 808
GsuI	CTGGAG	1 cut(s)	719
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	7 cut(s)	52, 64, 108, 302, 321, 438, 627
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	6 cut(s)	267, 342, 344, 414, 477, 513
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	277, 397, 418
Hin6I	GCGC	6 cut(s)	265, 340, 342, 412, 475, 511
HinP1I	GCGC	6 cut(s)	265, 340, 342, 412, 475, 511
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	203, 385
Hpy166II	GTNNAC	3 cut(s)	136, 259, 544
Hpy188I	TCNGA	6 cut(s)	315, 485, 621, 661, 668, 775
Hpy188III	TCNNGA	3 cut(s)	231, 406, 593
Hpy8I	GTNNAC	3 cut(s)	136, 259, 544
HpyAV	CCTTC	4 cut(s)	182, 320, 532, 616
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4V	TGCA	1 cut(s)	785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 346, 728
HpyF3I	CTNAG	8 cut(s)	92, 229, 345, 404, 507, 519, 723, 761
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	277, 397, 418
HspAI	GCGC	6 cut(s)	265, 340, 342, 412, 475, 511
KasI	GGCGCC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	327, 492
LmnI	GCTCC	2 cut(s)	515, 694
Lsp1109I	GCAGC	1 cut(s)	760
LweI	GCATC	2 cut(s)	561, 586
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	2 cut(s)	329, 494
MboI	GATC	2 cut(s)	327, 492
MboII	GAAGA	5 cut(s)	460, 589, 754, 805, 813
MhlI	GDGCHC	2 cut(s)	129, 724
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	2 cut(s)	37, 54
MluNI	TGGCCA	1 cut(s)	302
Mly113I	GGCGCC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	646
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	1 cut(s)	225
MvnI	CGCG	4 cut(s)	131, 332, 342, 513
MwoI	GCNNNNNNNGC	3 cut(s)	299, 346, 728
NarI	GGCGCC	1 cut(s)	265
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	2 cut(s)	327, 492
NlaIII	CATG	3 cut(s)	277, 397, 418
NlaIV	GGNNCC	5 cut(s)	266, 439, 591, 674, 802
NmuCI	GTSAC	1 cut(s)	826
NspI	RCATGY	1 cut(s)	277
PauI	GCGCGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	292, 561, 750
Ple19I	CGATCG	1 cut(s)	330
PluTI	GGCGCC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	307
Psp5II	RGGWCCY	1 cut(s)	307
PspFI	CCCAGC	2 cut(s)	423, 804
PspN4I	GGNNCC	5 cut(s)	266, 439, 591, 674, 802
PspPI	GGNCC	4 cut(s)	62, 307, 437, 625
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	787
PteI	GCGCGC	1 cut(s)	340
PvuI	CGATCG	1 cut(s)	330
RsaI	GTAC	2 cut(s)	121, 392
RsaNI	GTAC	2 cut(s)	120, 391
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	291, 560, 749
Sau3AI	GATC	2 cut(s)	327, 492
Sau96I	GGNCC	4 cut(s)	62, 307, 437, 625
SduI	GDGCHC	2 cut(s)	129, 724
SfaNI	GCATC	2 cut(s)	561, 586
SfcI	CTRYAG	1 cut(s)	783
SfoI	GGCGCC	1 cut(s)	266
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	2 cut(s)	37, 54
SspDI	GGCGCC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	481
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	2 cut(s)	37, 54
TatI	WGTACW	2 cut(s)	119, 390
TauI	GCSGC	2 cut(s)	293, 562
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	1 cut(s)	748
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	3 cut(s)	401, 431, 645
TspGWI	ACGGA	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	307
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.