Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

39279566 .. 39281808

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGTCCGGGTCAGGGATCTGCGCCAAGCGCGTGGTGGTGGACGCTCGTCACCACATGCTGGGCCGCTTGGCTTCCATTATCGCCAAGGAGCTCCTCAACGGCCAGAAGGTCGTCGTCGTCCGCTGCGAGGAGATCTGCATCTCCGGTGGCTTGGTCAGGCAGAAGATGAAGTACATGAGGTTCTTGCGTAAGCGCATGAACACCAAGCCCTCTCACGGCCCCATTCACTTCCGTGCCCCTGCTAAGATCCTCTGGCGCACAATCCGTGGGATGATTCCACACAAGACAAAGCGTGGAGCTGCTGCGCTTGCTCGGCTGAAGGCATATGAGGGAATTCCACCTCCTTATGATAAGATTAAGAGGATGGTCATTCCCGATGCTCTCAAGGTCTTGAGGCTTCAAGCAGGACACAAATACTGTTTGTTGGGCAAGCTTTCATCAGAGGTTGGATGGAACCACTATGACACTATCAGGGAGCTTGAGAAGAAGAGGAAGGAGAGGTCTCAGATTGCATATGAGAGAAAGAAACAGCTGAACAAACTGAGAGTCAAAGCAGAAAAGGTTGCTGAGGAGAAACTTGGTCCTCATGTAGAGATCATTGCCCCGATCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

206

Amino Acids

23.59

Weight (kDa)

10.4

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	11 - 115	1.1e-22	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccII	CGCG	1 cut(s)	33
AciI	CCGC	2 cut(s)	67, 124
AclWI	GGATC	2 cut(s)	26, 244
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
AgsI	TTSAA	1 cut(s)	404
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	5 cut(s)	94, 302, 436, 481, 535
AluI	AGCT	5 cut(s)	94, 302, 436, 481, 535
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	2 cut(s)	26, 244
AoxI	GGCC	3 cut(s)	64, 103, 220
ApeKI	GCWGC	3 cut(s)	126, 302, 305
ApoI	RAATTY	1 cut(s)	336
ArsI	GACNNNNNNTTYG	2 cut(s)	534, 566
AspLEI	GCGC	5 cut(s)	26, 33, 198, 261, 310
AspS9I	GGNCC	3 cut(s)	64, 221, 584
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	113, 289, 292
BccI	CCATC	2 cut(s)	361, 447
BceAI	ACGGC	2 cut(s)	118, 235
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	510
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	4 cut(s)	67, 127, 303, 306
BlsI	GCNGC	4 cut(s)	68, 128, 304, 307
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	3 cut(s)	64, 221, 584
BmiI	GGNNCC	2 cut(s)	223, 458
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	150, 370
BoxI	GACNNNNGTC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	3 cut(s)	371, 415, 503
BpuMI	CCSGG	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	87, 268
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
Bse3DI	GCAATG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	87, 268
BseGI	GGATG	3 cut(s)	279, 372, 458
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	3 cut(s)	521, 536, 561
BseRI	GAGGAG	3 cut(s)	86, 146, 587
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	113, 289, 292
BseYI	CCCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	66, 105, 222
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	9, 147
BslI	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
BsmAI	GTCTC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	66, 105, 222
Bso31I	GGTCTC	1 cut(s)	510
Bsp1286I	GDGCHC	2 cut(s)	96, 241
Bsp143I	GATC	5 cut(s)	18, 135, 249, 597, 609
BspACI	CCGC	2 cut(s)	67, 124
BspANI	GGCC	3 cut(s)	66, 105, 222
BspCNI	CTCAG	3 cut(s)	520, 537, 562
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	223, 458
BspPI	GGATC	2 cut(s)	26, 244
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	600
BssECI	CCNNGG	2 cut(s)	87, 268
BssMI	GATC	5 cut(s)	18, 135, 249, 597, 609
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	312, 434
BstDEI	CTNAG	4 cut(s)	246, 507, 545, 570
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	279, 372, 458
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	5 cut(s)	26, 33, 198, 261, 310
BstKTI	GATC	5 cut(s)	21, 138, 252, 600, 612
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	5 cut(s)	18, 135, 249, 597, 609
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 311, 316
BstNSI	RCATGY	1 cut(s)	61
BstPAI	GACNNNNGTC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	113, 289, 292
BstX2I	RGATCY	3 cut(s)	18, 135, 249
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	3 cut(s)	18, 135, 249
BsuRI	GGCC	3 cut(s)	66, 105, 222
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	3 cut(s)	279, 372, 458
Cac8I	GCNNGC	2 cut(s)	312, 434
CfoI	GCGC	5 cut(s)	26, 33, 198, 261, 310
Cfr13I	GGNCC	3 cut(s)	64, 221, 584
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	4 cut(s)	58, 178, 199, 590
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	4 cut(s)	246, 507, 545, 570
DpnI	GATC	5 cut(s)	20, 137, 251, 599, 611
DpnII	GATC	5 cut(s)	18, 135, 249, 597, 609
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	584
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	4 cut(s)	61, 181, 202, 593
FatI	CATG	4 cut(s)	57, 177, 198, 589
FauNDI	CATATG	2 cut(s)	328, 517
Fnu4HI	GCNGC	4 cut(s)	67, 127, 303, 306
FokI	GGATG	3 cut(s)	286, 379, 465
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	67, 127, 303, 306
GlaI	GCGC	5 cut(s)	25, 32, 197, 260, 309
GluI	GCNGC	4 cut(s)	67, 127, 303, 306
GsaI	CCCAGC	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	66, 105, 222
HapII	CCGG	2 cut(s)	9, 147
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	5 cut(s)	26, 33, 198, 261, 310
Hin1II	CATG	4 cut(s)	61, 181, 202, 593
Hin6I	GCGC	5 cut(s)	24, 31, 196, 259, 308
HinP1I	GCGC	5 cut(s)	24, 31, 196, 259, 308
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	277, 549
HpaII	CCGG	2 cut(s)	9, 147
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	445, 510
Hpy188III	TCNNGA	2 cut(s)	377, 394
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	3 cut(s)	103, 316, 490
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	2 cut(s)	141, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 311, 316
HpyF3I	CTNAG	4 cut(s)	246, 507, 545, 570
Hsp92II	CATG	4 cut(s)	61, 181, 202, 593
HspAI	GCGC	5 cut(s)	24, 31, 196, 259, 308
Kzo9I	GATC	5 cut(s)	18, 135, 249, 597, 609
LmnI	GCTCC	4 cut(s)	91, 99, 299, 478
LpnPI	CCDG	9 cut(s)	22, 47, 119, 145, 160, 241, 255, 393, 460
Lsp1109I	GCAGC	3 cut(s)	113, 289, 292
LweI	GCATC	2 cut(s)	150, 370
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	5 cut(s)	20, 137, 251, 599, 611
MboI	GATC	5 cut(s)	18, 135, 249, 597, 609
MboII	GAAGA	3 cut(s)	178, 499, 502
MflI	RGATCY	3 cut(s)	18, 135, 249
MhlI	GDGCHC	2 cut(s)	96, 241
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	558
MmeI	TCCRAC	1 cut(s)	430
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	2 cut(s)	126, 535
MspI	CCGG	2 cut(s)	9, 147
MspR9I	CCNGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	30, 311, 316
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	2 cut(s)	328, 517
NdeII	GATC	5 cut(s)	18, 135, 249, 597, 609
NlaIII	CATG	4 cut(s)	61, 181, 202, 593
NlaIV	GGNNCC	2 cut(s)	223, 458
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	68, 128, 304, 307
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
PshAI	GACNNNNGTC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	223, 458
PspPI	GGNCC	3 cut(s)	64, 221, 584
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
PsuI	RGATCY	3 cut(s)	18, 135, 249
PvuII	CAGCTG	1 cut(s)	535
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	4 cut(s)	67, 127, 303, 306
Sau3AI	GATC	5 cut(s)	18, 135, 249, 597, 609
Sau96I	GGNCC	3 cut(s)	64, 221, 584
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	96, 241
SfaNI	GCATC	2 cut(s)	150, 370
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	3 cut(s)	386, 394, 482
SmoI	CTYRAG	3 cut(s)	386, 394, 482
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	67, 124
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	422
TasI	AATT	1 cut(s)	336
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	3 cut(s)	126, 302, 305
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	185, 215, 429
TspGWI	ACGGA	2 cut(s)	224, 257
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.