Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

48153904 .. 48155576

Gene Structure 1673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25545

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGACCCGGCCCAATTGTACCAAAAACCCTAATTTGGACTCTTATAGCCTCCTCCTCCTCCTCCATCAGACTCAGACTCACAGTGAGAGAGAGAGAGAGAGAGAGTCGAAAATGGTATCGGGGTCAGGAATATGCGCGAAGAGGGTGGTGGTGGACGCTCGGCACCACATGCTGGGGCGATTGGCGTCGATCGTGGCGAAGGAGCTTCTCAACGGGCAGAAGGTGGTGGTTGTCCGCTGCGAGGAGATTGCCATCTCCGGCGGCCTCGTCCGGCAGAAGATGAAGTACATGCGGTTCCTCCGTAAGCGCATGAACACCAAGCCCTCCCACGGCCCCATCCACTTCCGCGCTCCCGCCAAAATCTTCTGGCGCACCGTCCGAGGGATGATTCCGCACAAGACTAAGCGCGGAGCCAATGCACTTGCTCGGTTGAAGGCTTACGAGGGAGTCCCACCCCCCTTTGATAAGATTAAGAGGATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAGTGGTCACAAGTACTGCTTGCTGGGTAAGCTGTCGTCCGAGGTTGGGTGGAACCACTATGATACCATCAGGGAGCTAGAAAAGAAGCGAAAAGAGAGGTCTCAGTTGGCTTACGAGAGGAAGAAGCAGCTAAACAAACTCAAGGTGAAGGCTGAAAAGGCTGCAGAGGAGAAGCTTGGCGCCCAGCTTGAAATCATTGCCCCTGTTAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

243

Amino Acids

27.91

Weight (kDa)

10.34

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	48 - 152	3.4e-23	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	162, 695
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccII	CGCG	3 cut(s)	137, 348, 408
AciI	CCGC	7 cut(s)	235, 261, 292, 346, 354, 392, 408
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	2 cut(s)	185, 696
AfaI	GTAC	4 cut(s)	19, 287, 530, 728
AfiI	CCNNNNNNNGG	6 cut(s)	34, 172, 241, 329, 381, 561
AgsI	TTSAA	2 cut(s)	433, 707
AluBI	AGCT	6 cut(s)	205, 547, 592, 646, 691, 703
AluI	AGCT	6 cut(s)	205, 547, 592, 646, 691, 703
Alw26I	GTCTC	1 cut(s)	621
AoxI	GGCC	3 cut(s)	8, 262, 331
ApeKI	GCWGC	3 cut(s)	237, 643, 677
AspLEI	GCGC	6 cut(s)	137, 309, 350, 372, 408, 698
AspS9I	GGNCC	2 cut(s)	9, 332
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	673
BanI	GGYRCC	2 cut(s)	162, 695
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
BbvI	GCAGC	3 cut(s)	224, 655, 664
BccI	CCATC	5 cut(s)	72, 260, 344, 472, 590
BceAI	ACGGC	1 cut(s)	346
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	699
BisI	GCNGC	4 cut(s)	238, 262, 644, 678
BlsI	GCNGC	4 cut(s)	239, 263, 645, 679
BmcAI	AGTACT	2 cut(s)	530, 728
Bme1390I	CCNGG	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	9, 332
BmiI	GGNNCC	6 cut(s)	164, 296, 334, 412, 569, 697
BmrFI	CCNGG	1 cut(s)	7
BmsI	GCATC	1 cut(s)	481
BpuEI	CTTGAG	2 cut(s)	482, 641
BpuMI	CCSGG	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	251
BsaHI	GRCGYC	2 cut(s)	185, 696
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	3 cut(s)	328, 379, 555
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 172, 241, 329, 381, 561
Bse3DI	GCAATG	1 cut(s)	711
Bse8I	GATNNNNATC	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	328, 379, 555
BseGI	GGATG	3 cut(s)	336, 390, 483
BseJI	GATNNNNATC	1 cut(s)	251
BseLI	CCNNNNNNNGG	6 cut(s)	34, 172, 241, 329, 381, 561
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	2 cut(s)	86, 632
BseRI	GAGGAG	6 cut(s)	41, 44, 47, 50, 257, 698
BseXI	GCAGC	3 cut(s)	224, 655, 664
BseYI	CCCAGC	3 cut(s)	172, 538, 699
Bsh1236I	CGCG	3 cut(s)	137, 348, 408
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	10, 264, 333
BshNI	GGYRCC	2 cut(s)	162, 695
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	7, 258, 271
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	6 cut(s)	34, 172, 241, 329, 381, 561
BsmAI	GTCTC	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	3 cut(s)	10, 264, 333
Bso31I	GGTCTC	1 cut(s)	621
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	7 cut(s)	235, 261, 292, 346, 354, 392, 408
BspANI	GGCC	3 cut(s)	10, 264, 333
BspCNI	CTCAG	2 cut(s)	85, 631
BspFNI	CGCG	3 cut(s)	137, 348, 408
BspLI	GGNNCC	6 cut(s)	164, 296, 334, 412, 569, 697
BspMAI	CTGCAG	1 cut(s)	682
BspT107I	GGYRCC	2 cut(s)	162, 695
BspTNI	GGTCTC	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	711
BssECI	CCNNGG	3 cut(s)	328, 379, 555
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	2 cut(s)	185, 696
Bst4CI	ACNGT	2 cut(s)	83, 376
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	185, 696
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	3 cut(s)	72, 402, 618
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	3 cut(s)	336, 390, 483
BstFNI	CGCG	3 cut(s)	137, 348, 408
BstH2I	RGCGCY	1 cut(s)	699
BstHHI	GCGC	6 cut(s)	137, 309, 350, 372, 408, 698
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	1 cut(s)	189
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 544, 674
BstNSI	RCATGY	2 cut(s)	172, 292
BstSCI	CCNGG	1 cut(s)	5
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	3 cut(s)	137, 348, 408
BstV1I	GCAGC	3 cut(s)	224, 655, 664
BsuRI	GGCC	3 cut(s)	10, 264, 333
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	336, 390, 483
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	536
CfoI	GCGC	6 cut(s)	137, 309, 350, 372, 408, 698
Cfr13I	GGNCC	2 cut(s)	9, 332
CseI	GACGC	2 cut(s)	164, 174
Csp6I	GTAC	4 cut(s)	18, 286, 529, 727
CviAII	CATG	3 cut(s)	169, 289, 310
CviQI	GTAC	4 cut(s)	18, 286, 529, 727
DdeI	CTNAG	3 cut(s)	72, 402, 618
DinI	GGCGCC	1 cut(s)	697
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco31I	GGTCTC	1 cut(s)	621
Eco57I	CTGAAG	1 cut(s)	497
EgeI	GGCGCC	1 cut(s)	697
EheI	GGCGCC	1 cut(s)	697
FaeI	CATG	3 cut(s)	172, 292, 313
FaiI	YATR	6 cut(s)	45, 133, 170, 290, 311, 576
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	3 cut(s)	168, 288, 309
FauI	CCCGC	1 cut(s)	361
Fnu4HI	GCNGC	4 cut(s)	238, 262, 644, 678
FokI	GGATG	3 cut(s)	323, 397, 490
Fsp4HI	GCNGC	4 cut(s)	238, 262, 644, 678
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	6 cut(s)	136, 308, 349, 371, 407, 697
GluI	GCNGC	4 cut(s)	238, 262, 644, 678
GsaI	CCCAGC	3 cut(s)	176, 542, 703
HaeII	RGCGCY	1 cut(s)	699
HaeIII	GGCC	3 cut(s)	10, 264, 333
HapII	CCGG	3 cut(s)	7, 258, 271
HgaI	GACGC	2 cut(s)	164, 174
HhaI	GCGC	6 cut(s)	137, 309, 350, 372, 408, 698
Hin1I	GRCGYC	2 cut(s)	185, 696
Hin1II	CATG	3 cut(s)	172, 292, 313
Hin6I	GCGC	6 cut(s)	135, 307, 348, 370, 406, 696
HinP1I	GCGC	6 cut(s)	135, 307, 348, 370, 406, 696
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	6 cut(s)	38, 70, 76, 104, 388, 447
HpaII	CCGG	3 cut(s)	7, 258, 271
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	5 cut(s)	69, 75, 380, 516, 556
Hpy188III	TCNNGA	2 cut(s)	126, 488
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	4 cut(s)	193, 214, 427, 658
HpyCH4III	ACNGT	2 cut(s)	83, 376
HpyCH4V	TGCA	2 cut(s)	419, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 544, 674
HpyF3I	CTNAG	3 cut(s)	72, 402, 618
Hsp92I	GRCGYC	2 cut(s)	185, 696
Hsp92II	CATG	3 cut(s)	172, 292, 313
HspAI	GCGC	6 cut(s)	135, 307, 348, 370, 406, 696
KasI	GGCGCC	1 cut(s)	695
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	4 cut(s)	202, 355, 410, 589
Lsp1109I	GCAGC	3 cut(s)	224, 655, 664
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	4 cut(s)	151, 289, 355, 649
MfeI	CAATTG	1 cut(s)	13
MluCI	AATT	2 cut(s)	13, 31
Mly113I	GGCGCC	1 cut(s)	696
MlyI	GAGTC	5 cut(s)	32, 64, 70, 113, 456
MseI	TTAA	2 cut(s)	471, 723
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	3 cut(s)	7, 258, 271
MspR9I	CCNGG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	13
MvnI	CGCG	3 cut(s)	137, 348, 408
MwoI	GCNNNNNNNGC	3 cut(s)	169, 544, 674
NarI	GGCGCC	1 cut(s)	696
NciI	CCSGG	1 cut(s)	7
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	3 cut(s)	172, 292, 313
NlaIV	GGNNCC	6 cut(s)	164, 296, 334, 412, 569, 697
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	521
NspI	RCATGY	2 cut(s)	172, 292
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	388
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	239, 263, 645, 679
Ple19I	CGATCG	1 cut(s)	192
PleI	GAGTC	5 cut(s)	32, 64, 70, 112, 455
PluTI	GGCGCC	1 cut(s)	699
PpsI	GAGTC	5 cut(s)	32, 64, 70, 112, 455
PspFI	CCCAGC	3 cut(s)	172, 538, 699
PspN4I	GGNNCC	6 cut(s)	164, 296, 334, 412, 569, 697
PspPI	GGNCC	2 cut(s)	9, 332
PsrI	GAACNNNNNNTAC	2 cut(s)	278, 310
PstI	CTGCAG	1 cut(s)	682
PvuI	CGATCG	1 cut(s)	192
RsaI	GTAC	4 cut(s)	19, 287, 530, 728
RsaNI	GTAC	4 cut(s)	18, 286, 529, 727
SaqAI	TTAA	2 cut(s)	471, 723
SatI	GCNGC	4 cut(s)	238, 262, 644, 678
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	2 cut(s)	9, 332
ScaI	AGTACT	2 cut(s)	530, 728
SchI	GAGTC	5 cut(s)	32, 64, 70, 113, 456
ScrFI	CCNGG	1 cut(s)	7
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	678
SfoI	GGCGCC	1 cut(s)	697
SmlI	CTYRAG	2 cut(s)	497, 656
SmoI	CTYRAG	2 cut(s)	497, 656
Sse9I	AATT	2 cut(s)	13, 31
SsiI	CCGC	7 cut(s)	235, 261, 292, 346, 354, 392, 408
SspDI	GGCGCC	1 cut(s)	695
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	83, 376
TaqI	TCGA	2 cut(s)	107, 188
TasI	AATT	2 cut(s)	13, 31
TatI	WGTACW	3 cut(s)	285, 528, 726
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	2 cut(s)	471, 723
Tru9I	TTAA	2 cut(s)	471, 723
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	3 cut(s)	237, 643, 677
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	296, 326
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	172
XceI	RCATGY	2 cut(s)	172, 292
XspI	CTAG	1 cut(s)	593
ZrmI	AGTACT	2 cut(s)	530, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.