Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

562744 .. 564998

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G006700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGTCTGGTTCAGGAATCTGCGCTAAGCGCGTCGTGGTGGACGCCCGCCACCACATGCTGGGTCGCCTGGCGTCGATACTCGCCAAAGAGCTTCTCAATGGGCAGAAGGTCGTGGTGGTTCGATGCGAGGAGATCTGCATCTCCGGTGGTCTCGTCAGGCAGAAGATGAAGTACATGAGATTCTTGCGCAAGCGCATGAACACCAAGCCCTCTCATGGTCCCATTCACTTCCGTGCCCCAGCTAAGATCCTCTGGCGCACCATCCGTGGAATGATTCCTCACAAGACCAAGCGTGGTGCAGCCGCACTTGCCCGTTTGAAGGCATACGAGGGTGTTCCACCTCCTTATGATAAGATAAAGAGGATGGTCATTCCTGATGCTCTCAAGGTTTTGAGGCTTCAAGCAGGACACAAGTACTGTTTGTTGGGCAAGCTTTCATCTGAGGTTGGATGGAATCACTATGAGACCATCAAGGAGCTTGAGAACAAGAGGAAGGAGAGGGCCCAGCTTGCATATGAGAGGAAGAAACAGTTGAACAAGCTGAGGGTGAAGGCAGAAAAGGTTGCTGAGGAGAAACTAGGTCCTCAGCTAGAGATCATTGCTCCTATTAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

207

Amino Acids

23.53

Weight (kDa)

10.35

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccII	CGCG	1 cut(s)	33
AciI	CCGC	2 cut(s)	49, 306
AclWI	GGATC	1 cut(s)	244
AcyI	GRCGYC	2 cut(s)	45, 74
AfaI	GTAC	2 cut(s)	176, 419
AfiI	CCNNNNNNNGG	3 cut(s)	61, 218, 322
AgsI	TTSAA	3 cut(s)	322, 404, 538
AjnI	CCWGG	1 cut(s)	69
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	7 cut(s)	94, 245, 436, 481, 511, 544, 592
AluI	AGCT	7 cut(s)	94, 245, 436, 481, 511, 544, 592
Alw26I	GTCTC	2 cut(s)	158, 461
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	504
ApaI	GGGCCC	1 cut(s)	508
ApeKI	GCWGC	1 cut(s)	302
AspLEI	GCGC	5 cut(s)	26, 33, 192, 198, 261
AspS9I	GGNCC	4 cut(s)	221, 504, 505, 584
AsuHPI	GGTGA	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	221, 584
BaeGI	GKGCMC	2 cut(s)	241, 508
BanII	GRGCYC	1 cut(s)	508
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
BbvCI	CCTCAGC	3 cut(s)	545, 570, 588
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	4 cut(s)	272, 361, 447, 479
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	158, 461
BfaI	CTAG	2 cut(s)	581, 593
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	2 cut(s)	303, 306
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	2 cut(s)	304, 307
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	2 cut(s)	221, 584
BmgT120I	GGNCC	4 cut(s)	221, 504, 505, 584
BmiI	GGNNCC	2 cut(s)	223, 506
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	3 cut(s)	116, 150, 370
Bpu10I	CCTNAGC	3 cut(s)	545, 570, 588
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	371, 503
BsaBI	GATNNNNATC	1 cut(s)	140
BsaHI	GRCGYC	2 cut(s)	45, 74
BsaI	GGTCTC	2 cut(s)	158, 461
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 218, 322
Bse3DI	GCAATG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	3 cut(s)	264, 372, 458
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	3 cut(s)	61, 218, 322
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	4 cut(s)	435, 536, 561, 602
BseRI	GAGGAG	2 cut(s)	146, 587
BseSI	GKGCMC	2 cut(s)	241, 508
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	3 cut(s)	61, 241, 507
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	3 cut(s)	61, 218, 322
BsmAI	GTCTC	2 cut(s)	158, 461
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	506
Bso31I	GGTCTC	2 cut(s)	158, 461
Bsp120I	GGGCCC	1 cut(s)	504
Bsp1286I	GDGCHC	2 cut(s)	241, 508
Bsp143I	GATC	3 cut(s)	135, 249, 597
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	49, 306
BspANI	GGCC	1 cut(s)	506
BspCNI	CTCAG	4 cut(s)	436, 537, 562, 601
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	223, 506
BspPI	GGATC	1 cut(s)	244
BspTNI	GGTCTC	2 cut(s)	158, 461
BsrDI	GCAATG	1 cut(s)	600
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	135, 249, 597
BssNI	GRCGYC	2 cut(s)	45, 74
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	422, 534
BstACI	GRCGYC	2 cut(s)	45, 74
BstC8I	GCNNGC	4 cut(s)	49, 194, 434, 513
BstDEI	CTNAG	6 cut(s)	27, 246, 444, 545, 570, 588
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	264, 372, 458
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	5 cut(s)	26, 33, 192, 198, 261
BstKTI	GATC	3 cut(s)	138, 252, 600
BstMAI	GTCTC	2 cut(s)	158, 461
BstMBI	GATC	3 cut(s)	135, 249, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 311, 512
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	69
BstSLI	GKGCMC	2 cut(s)	241, 508
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	135, 249
BstYI	RGATCY	2 cut(s)	135, 249
BsuRI	GGCC	1 cut(s)	506
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	3 cut(s)	264, 372, 458
Cac8I	GCNNGC	4 cut(s)	49, 194, 434, 513
CfoI	GCGC	5 cut(s)	26, 33, 192, 198, 261
Cfr13I	GGNCC	4 cut(s)	221, 504, 505, 584
CseI	GACGC	3 cut(s)	22, 53, 63
Csp6I	GTAC	2 cut(s)	175, 418
CviAII	CATG	4 cut(s)	58, 178, 199, 218
CviQI	GTAC	2 cut(s)	175, 418
DdeI	CTNAG	6 cut(s)	27, 246, 444, 545, 570, 588
DpnI	GATC	3 cut(s)	137, 251, 599
DpnII	GATC	3 cut(s)	135, 249, 597
Eco24I	GRGCYC	1 cut(s)	508
Eco31I	GGTCTC	2 cut(s)	158, 461
Eco47I	GGWCC	2 cut(s)	221, 584
EcoO109I	RGGNCCY	2 cut(s)	504, 584
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	508
FaeI	CATG	4 cut(s)	61, 181, 202, 221
FaiI	YATR	9 cut(s)	59, 179, 200, 219, 328, 351, 465, 517, 519
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	4 cut(s)	57, 177, 198, 217
FauI	CCCGC	1 cut(s)	56
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	3 cut(s)	251, 379, 465
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	2 cut(s)	303, 306
FspBI	CTAG	2 cut(s)	581, 593
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	5 cut(s)	25, 32, 191, 197, 260
GluI	GCNGC	2 cut(s)	303, 306
GsaI	CCCAGC	3 cut(s)	65, 245, 511
HaeIII	GGCC	1 cut(s)	506
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	3 cut(s)	22, 53, 63
HhaI	GCGC	5 cut(s)	26, 33, 192, 198, 261
Hin1I	GRCGYC	2 cut(s)	45, 74
Hin1II	CATG	4 cut(s)	61, 181, 202, 221
Hin6I	GCGC	5 cut(s)	24, 31, 190, 196, 259
HinP1I	GCGC	5 cut(s)	24, 31, 190, 196, 259
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	4 cut(s)	18, 183, 277, 457
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	2 cut(s)	15, 377
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	38, 79
HpyAV	CCTTC	4 cut(s)	103, 316, 490, 547
HpyCH4III	ACNGT	2 cut(s)	422, 534
HpyCH4V	TGCA	3 cut(s)	141, 302, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 311, 512
HpyF3I	CTNAG	6 cut(s)	27, 246, 444, 545, 570, 588
Hsp92I	GRCGYC	2 cut(s)	45, 74
Hsp92II	CATG	4 cut(s)	61, 181, 202, 221
HspAI	GCGC	5 cut(s)	24, 31, 190, 196, 259
Kzo9I	GATC	3 cut(s)	135, 249, 597
LmnI	GCTCC	2 cut(s)	478, 610
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	3 cut(s)	116, 150, 370
MaeI	CTAG	2 cut(s)	581, 593
MalI	GATC	3 cut(s)	137, 251, 599
MboI	GATC	3 cut(s)	135, 249, 597
MboII	GAAGA	2 cut(s)	178, 538
MflI	RGATCY	2 cut(s)	135, 249
MhlI	GDGCHC	2 cut(s)	241, 508
MmeI	TCCRAC	1 cut(s)	430
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	30, 311, 512
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	3 cut(s)	135, 249, 597
NlaIII	CATG	4 cut(s)	61, 181, 202, 221
NlaIV	GGNNCC	2 cut(s)	223, 506
NsbI	TGCGCA	1 cut(s)	191
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	234
PfeI	GAWTC	4 cut(s)	18, 183, 277, 457
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	304, 307
PpuMI	RGGWCCY	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	3 cut(s)	61, 241, 507
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	223, 506
PspOMI	GGGCCC	1 cut(s)	504
PspPI	GGNCC	4 cut(s)	221, 504, 505, 584
PspPPI	RGGWCCY	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	135, 249
RsaI	GTAC	2 cut(s)	176, 419
RsaNI	GTAC	2 cut(s)	175, 418
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	3 cut(s)	135, 249, 597
Sau96I	GGNCC	4 cut(s)	221, 504, 505, 584
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	241, 508
SfaNI	GCATC	3 cut(s)	116, 150, 370
SinI	GGWCC	2 cut(s)	221, 584
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	386, 482
SmoI	CTYRAG	2 cut(s)	386, 482
SsiI	CCGC	2 cut(s)	49, 306
SspI	AATATT	1 cut(s)	617
SspMI	CTAG	2 cut(s)	581, 593
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	422, 534
TaqI	TCGA	2 cut(s)	77, 124
TatI	WGTACW	2 cut(s)	174, 417
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	4 cut(s)	18, 183, 277, 457
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	185, 215, 429
TspGWI	ACGGA	2 cut(s)	224, 257
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	221, 584
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	2 cut(s)	581, 593
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.