Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

23547930 .. 23549454

Gene Structure 1525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00184330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTATCGGGGTCAGGAATATGCGCGAAGAGGGTGGTGGTGGACGCTCGGCATCACATGCTGGGGCGATTGGCGTCGATCGTGGCGAAGGAGCTTCTCAACGGCCAGAAGGTGGTGGTTGTCCGCTGCGAGGAGATTGCAATCTCCGGCGGCCTCGTCCGGCAGAAGATGAAGTACATGCGGTTCCTCCGTAAGCGCATGAACACCAAGCCCTCCCACGGCCCCATCCACTTCCGCGCTCCCGCCAAAATCTTCTGGCGCACCGTCCGGGGGATGATTCCGCACAAGACCAAGCGCGGAGCTAATGCACTTGCTCGGTTGAAGGCTTACGAGGAGTCCCACCCCTTTGATAAGATGAAGAGGATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAGTGGTCACAAGTACTGCTTGCTGGGTAAGCTGTCGTCCGAGGTTGGATGGAACCACTATGATACCATCAGGGAGCTAGAAAAGAAGCGAAAAGAGAGGTCTCAGTTGGCTTACGAGAGGAAGAAGCAGCTAAACAAACTCAAGGTGAAGGCTGAAAAGGCTGTGGAGGAGAAGCTTGGCGCCCAGCTTGAAATCATTGCCCCTGTTAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

205

Amino Acids

23.55

Weight (kDa)

10.4

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	11 - 113	5.9e-23	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	581
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccII	CGCG	3 cut(s)	26, 237, 297
AciI	CCGC	7 cut(s)	124, 150, 181, 235, 243, 281, 297
AcoI	YGGCCR	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	2 cut(s)	74, 582
AfaI	GTAC	3 cut(s)	176, 416, 614
AfiI	CCNNNNNNNGG	4 cut(s)	112, 130, 218, 270
AgsI	TTSAA	2 cut(s)	322, 593
AluBI	AGCT	7 cut(s)	94, 302, 433, 478, 532, 577, 589
AluI	AGCT	7 cut(s)	94, 302, 433, 478, 532, 577, 589
Alw26I	GTCTC	1 cut(s)	507
AoxI	GGCC	3 cut(s)	103, 151, 220
ApeKI	GCWGC	2 cut(s)	126, 529
AspLEI	GCGC	6 cut(s)	26, 198, 239, 261, 297, 584
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	581
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
BbvI	GCAGC	2 cut(s)	113, 541
BccI	CCATC	4 cut(s)	233, 358, 444, 476
BceAI	ACGGC	2 cut(s)	118, 235
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	585
BisI	GCNGC	3 cut(s)	127, 151, 530
BlsI	GCNGC	3 cut(s)	128, 152, 531
BmcAI	AGTACT	2 cut(s)	416, 614
Bme1390I	CCNGG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	4 cut(s)	185, 223, 455, 583
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	2 cut(s)	61, 367
BpuEI	CTTGAG	2 cut(s)	368, 527
BpuMI	CCSGG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	140
BsaHI	GRCGYC	2 cut(s)	74, 582
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	217, 268, 441
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 130, 218, 270
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	3 cut(s)	217, 268, 441
BseGI	GGATG	4 cut(s)	225, 279, 369, 455
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	4 cut(s)	112, 130, 218, 270
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	518
BseRI	GAGGAG	3 cut(s)	146, 347, 584
BseXI	GCAGC	2 cut(s)	113, 541
BseYI	CCCAGC	3 cut(s)	61, 424, 585
Bsh1236I	CGCG	3 cut(s)	26, 237, 297
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	105, 153, 222
BshNI	GGYRCC	1 cut(s)	581
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	3 cut(s)	147, 160, 268
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	112, 130, 218, 270
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	105, 153, 222
Bso31I	GGTCTC	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	7 cut(s)	124, 150, 181, 235, 243, 281, 297
BspANI	GGCC	3 cut(s)	105, 153, 222
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	3 cut(s)	26, 237, 297
BspLI	GGNNCC	4 cut(s)	185, 223, 455, 583
BspT107I	GGYRCC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	597
BssECI	CCNNGG	3 cut(s)	217, 268, 441
BssMI	GATC	1 cut(s)	78
BssNI	GRCGYC	2 cut(s)	74, 582
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	23, 353
BstACI	GRCGYC	2 cut(s)	74, 582
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	4 cut(s)	225, 279, 369, 455
BstFNI	CGCG	3 cut(s)	26, 237, 297
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	6 cut(s)	26, 198, 239, 261, 297, 584
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 430, 560
BstNSI	RCATGY	2 cut(s)	61, 181
BstSCI	CCNGG	1 cut(s)	267
BstUI	CGCG	3 cut(s)	26, 237, 297
BstV1I	GCAGC	2 cut(s)	113, 541
BsuRI	GGCC	3 cut(s)	105, 153, 222
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	225, 279, 369, 455
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	6 cut(s)	26, 198, 239, 261, 297, 584
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	2 cut(s)	53, 63
Csp6I	GTAC	3 cut(s)	175, 415, 613
CviAII	CATG	3 cut(s)	58, 178, 199
CviQI	GTAC	3 cut(s)	175, 415, 613
DdeI	CTNAG	1 cut(s)	504
DinI	GGCGCC	1 cut(s)	583
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	23, 353
EarI	CTCTTC	2 cut(s)	23, 353
Eco31I	GGTCTC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	383
EgeI	GGCGCC	1 cut(s)	583
EheI	GGCGCC	1 cut(s)	583
FaeI	CATG	3 cut(s)	61, 181, 202
FaiI	YATR	5 cut(s)	22, 59, 179, 200, 462
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	57, 177, 198
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	127, 151, 530
FokI	GGATG	4 cut(s)	212, 286, 376, 462
Fsp4HI	GCNGC	3 cut(s)	127, 151, 530
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	6 cut(s)	25, 197, 238, 260, 296, 583
GluI	GCNGC	3 cut(s)	127, 151, 530
GsaI	CCCAGC	3 cut(s)	65, 428, 589
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	105, 153, 222
HapII	CCGG	3 cut(s)	147, 160, 268
HgaI	GACGC	2 cut(s)	53, 63
HhaI	GCGC	6 cut(s)	26, 198, 239, 261, 297, 584
Hin1I	GRCGYC	2 cut(s)	74, 582
Hin1II	CATG	3 cut(s)	61, 181, 202
Hin6I	GCGC	6 cut(s)	24, 196, 237, 259, 295, 582
HinP1I	GCGC	6 cut(s)	24, 196, 237, 259, 295, 582
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	2 cut(s)	277, 335
HpaII	CCGG	3 cut(s)	147, 160, 268
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	402, 442
Hpy188III	TCNNGA	2 cut(s)	15, 374
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	82, 103, 316, 544
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	140, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 430, 560
HpyF3I	CTNAG	1 cut(s)	504
Hsp92I	GRCGYC	2 cut(s)	74, 582
Hsp92II	CATG	3 cut(s)	61, 181, 202
HspAI	GCGC	6 cut(s)	24, 196, 237, 259, 295, 582
KasI	GGCGCC	1 cut(s)	581
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	4 cut(s)	91, 244, 299, 475
Lsp1109I	GCAGC	2 cut(s)	113, 541
LweI	GCATC	2 cut(s)	61, 367
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	5 cut(s)	40, 178, 244, 370, 535
Mly113I	GGCGCC	1 cut(s)	582
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	427
MseI	TTAA	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	3 cut(s)	147, 160, 268
MspR9I	CCNGG	1 cut(s)	269
MvnI	CGCG	3 cut(s)	26, 237, 297
MwoI	GCNNNNNNNGC	3 cut(s)	58, 430, 560
NarI	GGCGCC	1 cut(s)	582
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	3 cut(s)	61, 181, 202
NlaIV	GGNNCC	4 cut(s)	185, 223, 455, 583
NmeAIII	GCCGAG	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	2 cut(s)	61, 181
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	128, 152, 531
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	1 cut(s)	343
PluTI	GGCGCC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	343
PspFI	CCCAGC	3 cut(s)	61, 424, 585
PspN4I	GGNNCC	4 cut(s)	185, 223, 455, 583
PspPI	GGNCC	1 cut(s)	221
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	3 cut(s)	176, 416, 614
RsaNI	GTAC	3 cut(s)	175, 415, 613
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	3 cut(s)	127, 151, 530
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	221
ScaI	AGTACT	2 cut(s)	416, 614
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	269
SfaNI	GCATC	2 cut(s)	61, 367
SfoI	GGCGCC	1 cut(s)	583
SmlI	CTYRAG	2 cut(s)	383, 542
SmoI	CTYRAG	2 cut(s)	383, 542
SsiI	CCGC	7 cut(s)	124, 150, 181, 235, 243, 281, 297
SspDI	GGCGCC	1 cut(s)	581
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	77
TatI	WGTACW	3 cut(s)	174, 414, 612
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	126, 529
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	185, 215, 371
TspGWI	ACGGA	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	112
XceI	RCATGY	2 cut(s)	61, 181
XspI	CTAG	1 cut(s)	479
ZrmI	AGTACT	2 cut(s)	416, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.