Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

47454985 .. 47456603

Gene Structure 1619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG280000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTATCGGGATCAGGAATATGCGCGAAGAGGGTGGTGGTGGACGCTCGGCACCACATGCTGGGGCGATTGGCGTCGATCGTGGCGAAGGAGCTTCTCAACGGGCAGAAGGTGGTGGTTGTCCGCTGCGAGGAGATTGCCATCTCCGGCGGCCTCGTCCGGCAGAAGATGAAGTACATGCGGTTCCTCCGTAAGCGCATGAACACGAAGCCCTCCCACGGCCCCATCCACTTCCGCGCTCCCGCCAAAATCTTCTGGCGCACCGTCCGAGGGATGATTCCGCACAAGACTAAGCGCGGAGCCAATGCACTTGCTCGGTTGAAGGCTTACGAGGGAGTCCCACCCCCCTTTGATAAGATGAAGAGGATGGTCATTCCTGATGCTCTCAAGGTGCTGAGGCTTCAGAGTGGTCACAAGTACTGCTTGCTGGGTAAGCTGTCGTCCGAGGTTGGGTGGAACCACTATGATACCATCAGGGAGCTAGAAAAGAAGCGAAAAGAGAGGTCTCAGTTGGCTTACGAGAGGAAGAAGCAGCTAAACAAACTCAAGATGAAGGCTGAAAAGGCTGCGGAGGAGAAGCTTGGCGCCCAGCTTGAAATCATTGCCCCTGTTAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

206

Amino Acids

23.55

Weight (kDa)

10.46

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	11 - 115	2.3e-23	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	51, 584
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccII	CGCG	3 cut(s)	26, 237, 297
AciI	CCGC	8 cut(s)	124, 150, 181, 235, 243, 281, 297, 569
AclWI	GGATC	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	386
AcyI	GRCGYC	2 cut(s)	74, 585
AfaI	GTAC	3 cut(s)	176, 419, 617
AfiI	CCNNNNNNNGG	5 cut(s)	61, 130, 218, 270, 450
AgsI	TTSAA	2 cut(s)	322, 596
AluBI	AGCT	6 cut(s)	94, 436, 481, 535, 580, 592
AluI	AGCT	6 cut(s)	94, 436, 481, 535, 580, 592
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	151, 220
ApeKI	GCWGC	3 cut(s)	126, 532, 566
AspLEI	GCGC	6 cut(s)	26, 198, 239, 261, 297, 587
AspS9I	GGNCC	1 cut(s)	221
BanI	GGYRCC	2 cut(s)	51, 584
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	113, 544, 553
BccI	CCATC	4 cut(s)	149, 233, 361, 479
BceAI	ACGGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	482
BfoI	RGCGCY	1 cut(s)	588
BisI	GCNGC	4 cut(s)	127, 151, 533, 567
BlsI	GCNGC	4 cut(s)	128, 152, 534, 568
BmcAI	AGTACT	2 cut(s)	419, 617
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	6 cut(s)	53, 185, 223, 301, 458, 586
BmsI	GCATC	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	2 cut(s)	371, 530
BsaBI	GATNNNNATC	1 cut(s)	140
BsaHI	GRCGYC	2 cut(s)	74, 585
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	217, 268, 444
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 130, 218, 270, 450
Bse3DI	GCAATG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	3 cut(s)	217, 268, 444
BseGI	GGATG	3 cut(s)	225, 279, 372
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	5 cut(s)	61, 130, 218, 270, 450
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	2 cut(s)	386, 521
BseRI	GAGGAG	2 cut(s)	146, 587
BseXI	GCAGC	3 cut(s)	113, 544, 553
BseYI	CCCAGC	3 cut(s)	61, 427, 588
Bsh1236I	CGCG	3 cut(s)	26, 237, 297
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	153, 222
BshNI	GGYRCC	2 cut(s)	51, 584
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	147, 160
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	5 cut(s)	61, 130, 218, 270, 450
BsmAI	GTCTC	1 cut(s)	510
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	153, 222
Bso31I	GGTCTC	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	11, 78
BspACI	CCGC	8 cut(s)	124, 150, 181, 235, 243, 281, 297, 569
BspANI	GGCC	2 cut(s)	153, 222
BspCNI	CTCAG	2 cut(s)	387, 520
BspFNI	CGCG	3 cut(s)	26, 237, 297
BspLI	GGNNCC	6 cut(s)	53, 185, 223, 301, 458, 586
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	2 cut(s)	51, 584
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	600
BssECI	CCNNGG	3 cut(s)	217, 268, 444
BssMI	GATC	2 cut(s)	11, 78
BssNI	GRCGYC	2 cut(s)	74, 585
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	23, 356
BstACI	GRCGYC	2 cut(s)	74, 585
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	291, 395, 507
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	225, 279, 372
BstFNI	CGCG	3 cut(s)	26, 237, 297
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	6 cut(s)	26, 198, 239, 261, 297, 587
BstKTI	GATC	2 cut(s)	14, 81
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	2 cut(s)	11, 78
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 433, 563
BstNSI	RCATGY	2 cut(s)	61, 181
BstUI	CGCG	3 cut(s)	26, 237, 297
BstV1I	GCAGC	3 cut(s)	113, 544, 553
BsuRI	GGCC	2 cut(s)	153, 222
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	225, 279, 372
Cac8I	GCNNGC	1 cut(s)	425
CfoI	GCGC	6 cut(s)	26, 198, 239, 261, 297, 587
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	2 cut(s)	53, 63
Csp6I	GTAC	3 cut(s)	175, 418, 616
CviAII	CATG	3 cut(s)	58, 178, 199
CviQI	GTAC	3 cut(s)	175, 418, 616
DdeI	CTNAG	3 cut(s)	291, 395, 507
DinI	GGCGCC	1 cut(s)	586
DpnI	GATC	2 cut(s)	13, 80
DpnII	GATC	2 cut(s)	11, 78
Eam1104I	CTCTTC	2 cut(s)	23, 356
EarI	CTCTTC	2 cut(s)	23, 356
Eco31I	GGTCTC	1 cut(s)	510
Eco57I	CTGAAG	1 cut(s)	386
EgeI	GGCGCC	1 cut(s)	586
EheI	GGCGCC	1 cut(s)	586
FaeI	CATG	3 cut(s)	61, 181, 202
FaiI	YATR	5 cut(s)	22, 59, 179, 200, 465
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	3 cut(s)	57, 177, 198
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	127, 151, 533, 567
FokI	GGATG	3 cut(s)	212, 286, 379
Fsp4HI	GCNGC	4 cut(s)	127, 151, 533, 567
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	6 cut(s)	25, 197, 238, 260, 296, 586
GluI	GCNGC	4 cut(s)	127, 151, 533, 567
GsaI	CCCAGC	3 cut(s)	65, 431, 592
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	153, 222
HapII	CCGG	2 cut(s)	147, 160
HgaI	GACGC	2 cut(s)	53, 63
HhaI	GCGC	6 cut(s)	26, 198, 239, 261, 297, 587
Hin1I	GRCGYC	2 cut(s)	74, 585
Hin1II	CATG	3 cut(s)	61, 181, 202
Hin6I	GCGC	6 cut(s)	24, 196, 237, 259, 295, 585
HinP1I	GCGC	6 cut(s)	24, 196, 237, 259, 295, 585
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	2 cut(s)	277, 336
HpaII	CCGG	2 cut(s)	147, 160
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	269, 405, 445
Hpy188III	TCNNGA	4 cut(s)	9, 15, 377, 547
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	82, 103, 316, 547
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 433, 563
HpyF3I	CTNAG	3 cut(s)	291, 395, 507
Hsp92I	GRCGYC	2 cut(s)	74, 585
Hsp92II	CATG	3 cut(s)	61, 181, 202
HspAI	GCGC	6 cut(s)	24, 196, 237, 259, 295, 585
KasI	GGCGCC	1 cut(s)	584
Kzo9I	GATC	2 cut(s)	11, 78
LmnI	GCTCC	4 cut(s)	91, 244, 299, 478
LpnPI	CCDG	8 cut(s)	47, 160, 173, 241, 390, 413, 460, 602
Lsp1109I	GCAGC	3 cut(s)	113, 544, 553
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	13, 80
MboI	GATC	2 cut(s)	11, 78
MboII	GAAGA	5 cut(s)	40, 178, 244, 373, 538
Mly113I	GGCGCC	1 cut(s)	585
MlyI	GAGTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	2 cut(s)	147, 160
MvnI	CGCG	3 cut(s)	26, 237, 297
MwoI	GCNNNNNNNGC	3 cut(s)	58, 433, 563
NarI	GGCGCC	1 cut(s)	585
NdeII	GATC	2 cut(s)	11, 78
NlaIII	CATG	3 cut(s)	61, 181, 202
NlaIV	GGNNCC	6 cut(s)	53, 185, 223, 301, 458, 586
NmeAIII	GCCGAG	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	2 cut(s)	61, 181
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	128, 152, 534, 568
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	1 cut(s)	344
PluTI	GGCGCC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	344
PspFI	CCCAGC	3 cut(s)	61, 427, 588
PspN4I	GGNNCC	6 cut(s)	53, 185, 223, 301, 458, 586
PspPI	GGNCC	1 cut(s)	221
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	3 cut(s)	176, 419, 617
RsaNI	GTAC	3 cut(s)	175, 418, 616
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	4 cut(s)	127, 151, 533, 567
Sau3AI	GATC	2 cut(s)	11, 78
Sau96I	GGNCC	1 cut(s)	221
ScaI	AGTACT	2 cut(s)	419, 617
SchI	GAGTC	1 cut(s)	345
SfaNI	GCATC	1 cut(s)	370
SfoI	GGCGCC	1 cut(s)	586
SmlI	CTYRAG	2 cut(s)	386, 545
SmoI	CTYRAG	2 cut(s)	386, 545
SsiI	CCGC	8 cut(s)	124, 150, 181, 235, 243, 281, 297, 569
SspDI	GGCGCC	1 cut(s)	584
SspMI	CTAG	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	77
TatI	WGTACW	3 cut(s)	174, 417, 615
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	3 cut(s)	126, 532, 566
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	4 cut(s)	185, 215, 374, 566
TspGWI	ACGGA	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	61
XceI	RCATGY	2 cut(s)	61, 181
XspI	CTAG	1 cut(s)	482
ZrmI	AGTACT	2 cut(s)	419, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.