Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

19771099 .. 19772789

Gene Structure 1691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTCGACGCGCGCCACCACATGCTTGGCCGTCTTGCGTCGATCACCGCTAAAGAGCTTCTCAATGGCCAGAAAGTTGTCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGCGGACTCGTTCGTCAGAAAATGAAGTACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAAGGTATATGAAGGTGTTCCTACTCCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAGGTGTTGAGGCTTCAAGCTGGTCACAAATACTGTCTATTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTACGACACCATCAAGGAGCTGGAGACAAAGAGGAAGGAGAGAGCCCACGTGGTTTACGAGCGAAAGAAGCAACTTAACAAACTTAGAGTTAAGGCCGAGAAGGTCGCTGAAGAGAAGCTCGGAGCACAGCTCGATATTCTTGCGCCAGTTAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

206

Amino Acids

23.59

Weight (kDa)

10.39

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	10 - 116	7.7e-23	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	4 cut(s)	33, 47, 49, 270
AciI	CCGC	3 cut(s)	84, 150, 270
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	2 cut(s)	64, 103
AcuI	CTGAAG	3 cut(s)	341, 465, 591
AcvI	CACGTG	1 cut(s)	511
AfaI	GTAC	3 cut(s)	176, 262, 617
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	404
AjiI	CACGTC	1 cut(s)	317
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	6 cut(s)	94, 302, 407, 481, 580, 592
AluI	AGCT	6 cut(s)	94, 302, 407, 481, 580, 592
Alw21I	GWGCWC	2 cut(s)	241, 589
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	4 cut(s)	64, 103, 430, 555
ApeKI	GCWGC	2 cut(s)	302, 305
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	4 cut(s)	33, 49, 51, 607
AspS9I	GGNCC	2 cut(s)	221, 430
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	508
BbrPI	CACGTG	1 cut(s)	511
Bbv12I	GWGCWC	2 cut(s)	241, 589
BbvI	GCAGC	2 cut(s)	289, 292
BccI	CCATC	2 cut(s)	361, 479
BceAI	ACGGC	2 cut(s)	51, 417
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BcoDI	GTCTC	1 cut(s)	479
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
BmcAI	AGTACT	1 cut(s)	617
Bme18I	GGWCC	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	221, 430
BmiI	GGNNCC	1 cut(s)	458
BmsI	GCATC	1 cut(s)	370
BplI	GAGNNNNNCTC	2 cut(s)	576, 608
BpmI	CTGGAG	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	371
BsaAI	YACGTR	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	608
Bse8I	GATNNNNATC	1 cut(s)	371
BseGI	GGATG	2 cut(s)	372, 372
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	608
BsePI	GCGCGC	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	289, 292
Bsh1236I	CGCG	4 cut(s)	33, 47, 49, 270
BshFI	GGCC	4 cut(s)	66, 105, 432, 557
BsiHKAI	GWGCWC	2 cut(s)	241, 589
BsiSI	CCGG	2 cut(s)	124, 147
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	479
BsnI	GGCC	4 cut(s)	66, 105, 432, 557
Bsp1286I	GDGCHC	3 cut(s)	241, 508, 589
Bsp143I	GATC	3 cut(s)	11, 78, 357
BspACI	CCGC	3 cut(s)	84, 150, 270
BspANI	GGCC	4 cut(s)	66, 105, 432, 557
BspFNI	CGCG	4 cut(s)	33, 47, 49, 270
BspLI	GGNNCC	1 cut(s)	458
BspPI	GGATC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	608
BssHII	GCGCGC	1 cut(s)	47
BssMI	GATC	3 cut(s)	11, 78, 357
Bst4CI	ACNGT	2 cut(s)	265, 422
Bst6I	CTCTTC	2 cut(s)	126, 567
BstBAI	YACGTR	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	372, 372
BstFNI	CGCG	4 cut(s)	33, 47, 49, 270
BstHHI	GCGC	4 cut(s)	33, 49, 51, 607
BstKTI	GATC	3 cut(s)	14, 81, 360
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	3 cut(s)	11, 78, 357
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 147, 311, 529
BstNSI	RCATGY	1 cut(s)	61
BstUI	CGCG	4 cut(s)	33, 47, 49, 270
BstV1I	GCAGC	2 cut(s)	289, 292
BstXI	CCANNNNNNTGG	1 cut(s)	62
BsuRI	GGCC	4 cut(s)	66, 105, 432, 557
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	372, 372
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	4 cut(s)	33, 49, 51, 607
Cfr13I	GGNCC	2 cut(s)	221, 430
CseI	GACGC	2 cut(s)	53, 63
Csp6I	GTAC	3 cut(s)	175, 261, 616
CviAII	CATG	3 cut(s)	58, 178, 218
CviQI	GTAC	3 cut(s)	175, 261, 616
DdeI	CTNAG	1 cut(s)	545
DpnI	GATC	3 cut(s)	13, 80, 359
DpnII	GATC	3 cut(s)	11, 78, 357
DrdI	GACNNNNNNGTC	1 cut(s)	159
DseDI	GACNNNNNNGTC	1 cut(s)	159
EaeI	YGGCCR	2 cut(s)	64, 103
Eam1104I	CTCTTC	2 cut(s)	126, 567
EarI	CTCTTC	2 cut(s)	126, 567
EciI	GGCGGA	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	3 cut(s)	341, 465, 591
Eco72I	CACGTG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	508
FaeI	CATG	3 cut(s)	61, 181, 221
FatI	CATG	3 cut(s)	57, 177, 217
FauNDI	CATATG	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	2 cut(s)	359, 379
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	2 cut(s)	303, 306
GlaI	GCGC	4 cut(s)	32, 48, 50, 606
GluI	GCNGC	2 cut(s)	303, 306
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	4 cut(s)	66, 105, 432, 557
HapII	CCGG	2 cut(s)	124, 147
HgaI	GACGC	2 cut(s)	53, 63
HhaI	GCGC	4 cut(s)	33, 49, 51, 607
Hin1II	CATG	3 cut(s)	61, 181, 221
Hin6I	GCGC	4 cut(s)	31, 47, 49, 605
HinP1I	GCGC	4 cut(s)	31, 47, 49, 605
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	153, 277
HpaII	CCGG	2 cut(s)	124, 147
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	43, 517
Hpy188I	TCNGA	4 cut(s)	165, 321, 445, 584
Hpy188III	TCNNGA	2 cut(s)	9, 361
Hpy8I	GTNNAC	2 cut(s)	43, 517
Hpy99I	CGWCG	3 cut(s)	44, 47, 79
HpyAV	CCTTC	6 cut(s)	222, 252, 316, 326, 490, 556
HpyCH4III	ACNGT	2 cut(s)	265, 422
HpyCH4IV	ACGT	3 cut(s)	196, 316, 510
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 147, 311, 529
HpyF3I	CTNAG	1 cut(s)	545
HpySE526I	ACGT	3 cut(s)	196, 316, 510
Hsp92II	CATG	3 cut(s)	61, 181, 221
HspAI	GCGC	4 cut(s)	31, 47, 49, 605
Kzo9I	GATC	3 cut(s)	11, 78, 357
LmnI	GCTCC	4 cut(s)	244, 299, 478, 584
LpnPI	CCDG	7 cut(s)	119, 137, 160, 241, 390, 393, 467
Lsp1109I	GCAGC	2 cut(s)	289, 292
LweI	GCATC	1 cut(s)	370
MaeII	ACGT	3 cut(s)	196, 316, 510
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	3 cut(s)	13, 80, 359
MboI	GATC	3 cut(s)	11, 78, 357
MboII	GAAGA	5 cut(s)	143, 179, 244, 432, 584
MhlI	GDGCHC	3 cut(s)	241, 508, 589
MlsI	TGGCCA	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	5 cut(s)	152, 174, 357, 390, 486
Mox20I	TGGCCA	1 cut(s)	105
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	3 cut(s)	537, 552, 612
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	2 cut(s)	124, 147
MvnI	CGCG	4 cut(s)	33, 47, 49, 270
MwoI	GCNNNNNNNGC	4 cut(s)	30, 147, 311, 529
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	11, 78, 357
NlaIII	CATG	3 cut(s)	61, 181, 221
NlaIV	GGNNCC	1 cut(s)	458
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	234
PauI	GCGCGC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	304, 307
PleI	GAGTC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	147
Ppu21I	YACGTR	1 cut(s)	511
PspCI	CACGTG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	2 cut(s)	221, 430
PteI	GCGCGC	1 cut(s)	47
RsaI	GTAC	3 cut(s)	176, 262, 617
RsaNI	GTAC	3 cut(s)	175, 261, 616
RseI	CAYNNNNRTG	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	537, 552, 612
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	3 cut(s)	11, 78, 357
Sau96I	GGNCC	2 cut(s)	221, 430
ScaI	AGTACT	1 cut(s)	617
SchI	GAGTC	1 cut(s)	147
SduI	GDGCHC	3 cut(s)	241, 508, 589
SfaNI	GCATC	1 cut(s)	370
SgrDI	CGTCGACG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	3 cut(s)	84, 150, 270
TaaI	ACNGT	2 cut(s)	265, 422
TaiI	ACGT	3 cut(s)	199, 319, 513
TaqI	TCGA	4 cut(s)	26, 42, 77, 594
TatI	WGTACW	2 cut(s)	174, 615
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	3 cut(s)	537, 552, 612
Tru9I	TTAA	3 cut(s)	537, 552, 612
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	302, 305
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	3 cut(s)	185, 215, 345
TspGWI	ACGGA	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	221
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	2 cut(s)	59, 478
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	336
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.