Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

43641653 .. 43643744

Gene Structure 2092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG394400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGTCCGGGTCAGGGATCTGCGCTAAGCGCGTGGTGGTGGACGCTCGCCACCACATGCTCGGCCGGTTGGCGTCGATAATCGCCAAAGAGCTTCTCAATGGCCAGAAGGTGGTGGTGGTTCGCTGCGAGGAGATCTGTATCTCCGGTGGTTTGGTGCGGCAGAAGATGAAGTACATGCGATTCTTGCGTAAGCGCATGAACACCAAGCCTTCTCATGGCCCCATTCACTTTCGTGCTCCTGCTAAGATCCTCTGGCGCACAATTCGTGGGATGATTCCTCACAAGACAAAGCGTGGAGCTGCTGCGCTTGCTCGTTTGAAGGCGTATGAAGGGGTTCCCCCTCCTTATGATAAGATAAAGAGGATGGTCATTCCCGATGCTCTCAAGGTCTTGAGGCTTCAAGCAGGACACAAGTACTGTTTGTTGGGCAAGCTTTCATCAGAGGTTGGATGGAACCACTATGACACCATCAAGGAGCTTGAAAAGAAGAGAAAGGAGAGGGCTCAACTTGCATATGAGAGGAAGAAGCAGTTGAACAAATTGAGGGTCAAAGCAGAAAAGGTTGCTGAGGAGAAACTAGGTCCTCATCTAGAGATCATTGCTCCTATCAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

206

Amino Acids

23.54

Weight (kDa)

10.36

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	11 - 115	1.2e-22	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	2 cut(s)	26, 244
AcoI	YGGCCR	2 cut(s)	64, 103
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	176, 419
AfiI	CCNNNNNNNGG	3 cut(s)	15, 112, 218
AgsI	TTSAA	4 cut(s)	322, 404, 485, 538
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	4 cut(s)	94, 302, 436, 481
AluI	AGCT	4 cut(s)	94, 302, 436, 481
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	26, 244
AoxI	GGCC	3 cut(s)	64, 103, 220
ApeKI	GCWGC	3 cut(s)	126, 302, 305
ArsI	GACNNNNNNTTYG	2 cut(s)	534, 566
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	5 cut(s)	26, 33, 198, 261, 310
AspS9I	GGNCC	2 cut(s)	221, 584
AsuC2I	CCSGG	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	508
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
Bbv12I	GWGCWC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	113, 289, 292
BccI	CCATC	3 cut(s)	361, 447, 479
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	2 cut(s)	581, 593
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	4 cut(s)	127, 161, 303, 306
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	4 cut(s)	128, 162, 304, 307
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	221, 584
BmiI	GGNNCC	3 cut(s)	223, 339, 458
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	371, 415
BpuMI	CCSGG	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 112, 218
Bse118I	RCCGGY	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	140
BseGI	GGATG	3 cut(s)	279, 372, 458
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	3 cut(s)	15, 112, 218
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	561
BseRI	GAGGAG	2 cut(s)	146, 587
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	3 cut(s)	113, 289, 292
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	66, 105, 222
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	9, 67, 147
BslI	CCNNNNNNNGG	3 cut(s)	15, 112, 218
BsnI	GGCC	3 cut(s)	66, 105, 222
Bsp1286I	GDGCHC	2 cut(s)	241, 508
Bsp143I	GATC	4 cut(s)	18, 135, 249, 597
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	3 cut(s)	66, 105, 222
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	223, 339, 458
BspPI	GGATC	2 cut(s)	26, 244
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	4 cut(s)	18, 135, 249, 597
BssNI	GRCGYC	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	485
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	49, 312, 434
BstDEI	CTNAG	3 cut(s)	27, 246, 570
BstF5I	GGATG	3 cut(s)	279, 372, 458
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	5 cut(s)	26, 33, 198, 261, 310
BstKTI	GATC	4 cut(s)	21, 138, 252, 600
BstMBI	GATC	4 cut(s)	18, 135, 249, 597
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 187, 311, 512
BstNSI	RCATGY	2 cut(s)	61, 181
BstSCI	CCNGG	1 cut(s)	8
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	113, 289, 292
BstX2I	RGATCY	3 cut(s)	18, 135, 249
BstYI	RGATCY	3 cut(s)	18, 135, 249
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	66, 105, 222
BtsCI	GGATG	3 cut(s)	279, 372, 458
Cac8I	GCNNGC	3 cut(s)	49, 312, 434
CfoI	GCGC	5 cut(s)	26, 33, 198, 261, 310
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	221, 584
CseI	GACGC	2 cut(s)	53, 63
Csp6I	GTAC	2 cut(s)	175, 418
CviAII	CATG	4 cut(s)	58, 178, 199, 218
CviQI	GTAC	2 cut(s)	175, 418
DdeI	CTNAG	3 cut(s)	27, 246, 570
DpnI	GATC	4 cut(s)	20, 137, 251, 599
DpnII	GATC	4 cut(s)	18, 135, 249, 597
EaeI	YGGCCR	2 cut(s)	64, 103
EagI	CGGCCG	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EclXI	CGGCCG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	584
Eco52I	CGGCCG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	584
EcoT38I	GRGCYC	1 cut(s)	508
FaeI	CATG	4 cut(s)	61, 181, 202, 221
FaiI	YATR	9 cut(s)	59, 179, 200, 219, 330, 351, 465, 517, 519
FatI	CATG	4 cut(s)	57, 177, 198, 217
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	127, 161, 303, 306
FokI	GGATG	3 cut(s)	286, 379, 465
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	4 cut(s)	127, 161, 303, 306
FspBI	CTAG	2 cut(s)	581, 593
GlaI	GCGC	5 cut(s)	25, 32, 197, 260, 309
GluI	GCNGC	4 cut(s)	127, 161, 303, 306
HaeIII	GGCC	3 cut(s)	66, 105, 222
HapII	CCGG	3 cut(s)	9, 67, 147
HgaI	GACGC	2 cut(s)	53, 63
HhaI	GCGC	5 cut(s)	26, 33, 198, 261, 310
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	61, 181, 202, 221
Hin6I	GCGC	5 cut(s)	24, 31, 196, 259, 308
HinP1I	GCGC	5 cut(s)	24, 31, 196, 259, 308
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	183, 277
HpaII	CCGG	3 cut(s)	9, 67, 147
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	3 cut(s)	377, 394, 593
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	103, 222, 316, 326
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 187, 311, 512
HpyF3I	CTNAG	3 cut(s)	27, 246, 570
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	61, 181, 202, 221
HspAI	GCGC	5 cut(s)	24, 31, 196, 259, 308
Kzo9I	GATC	4 cut(s)	18, 135, 249, 597
LmnI	GCTCC	4 cut(s)	244, 299, 478, 610
LpnPI	CCDG	7 cut(s)	22, 80, 119, 160, 241, 255, 393
Lsp1109I	GCAGC	3 cut(s)	113, 289, 292
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	581, 593
MalI	GATC	4 cut(s)	20, 137, 251, 599
MboI	GATC	4 cut(s)	18, 135, 249, 597
MboII	GAAGA	3 cut(s)	178, 502, 538
MflI	RGATCY	3 cut(s)	18, 135, 249
MhlI	GDGCHC	2 cut(s)	241, 508
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	2 cut(s)	264, 542
MluNI	TGGCCA	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	430
Mox20I	TGGCCA	1 cut(s)	105
MroXI	GAANNNNTTC	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	3 cut(s)	9, 67, 147
MspR9I	CCNGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	30, 187, 311, 512
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	4 cut(s)	18, 135, 249, 597
NlaIII	CATG	4 cut(s)	61, 181, 202, 221
NlaIV	GGNNCC	3 cut(s)	223, 339, 458
NmeAIII	GCCGAG	1 cut(s)	42
NspI	RCATGY	2 cut(s)	61, 181
OliI	CACNNNNGTG	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	183, 277
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	128, 162, 304, 307
PpuMI	RGGWCCY	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	584
PspN4I	GGNNCC	3 cut(s)	223, 339, 458
PspPI	GGNCC	2 cut(s)	221, 584
PspPPI	RGGWCCY	1 cut(s)	584
PsuI	RGATCY	3 cut(s)	18, 135, 249
RsaI	GTAC	2 cut(s)	176, 419
RsaNI	GTAC	2 cut(s)	175, 418
RseI	CAYNNNNRTG	1 cut(s)	234
SatI	GCNGC	4 cut(s)	127, 161, 303, 306
Sau3AI	GATC	4 cut(s)	18, 135, 249, 597
Sau96I	GGNCC	2 cut(s)	221, 584
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	241, 508
SetI	ASST	9 cut(s)	96, 114, 304, 393, 438, 450, 483, 567, 586
SfaNI	GCATC	1 cut(s)	370
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	386, 394
SmoI	CTYRAG	2 cut(s)	386, 394
Sse9I	AATT	2 cut(s)	264, 542
SsiI	CCGC	1 cut(s)	160
SspI	AATATT	1 cut(s)	617
SspMI	CTAG	2 cut(s)	581, 593
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	77
TasI	AATT	2 cut(s)	264, 542
TatI	WGTACW	2 cut(s)	174, 417
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	183, 277
TseI	GCWGC	3 cut(s)	126, 302, 305
TspDTI	ATGAA	4 cut(s)	185, 215, 345, 429
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	584
XbaI	TCTAGA	1 cut(s)	592
XceI	RCATGY	2 cut(s)	61, 181
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	2 cut(s)	581, 593
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.