Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004076.1

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

128634 .. 129236

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004076.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggtgtccgggtcagggatctgcgccaagcgcgtggtggtggacgctcgtcaccacatgttgggccgcttggcttccattatcgccaaggagctcctcaacggccagaaggtcgtcgtcgtccgctgcgaggagatctgcatctccggtggcttggtcaggcagaagatgaagtacatgaggttcttgcgtaagcgcatgaacaccaagccctctcatggccccattcacttccgtgcccccgctaagatcctctggcgcacaatccgtgggatgattccacacaagacaaagcgttcctttgatttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

103

Amino Acids

11.8

Weight (kDa)

11.4

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccII	CGCG	1 cut(s)	33
AciI	CCGC	3 cut(s)	67, 124, 243
AclWI	GGATC	2 cut(s)	26, 244
AcoI	YGGCCR	1 cut(s)	103
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
AflIII	ACRYGT	1 cut(s)	57
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	26, 244
AoxI	GGCC	3 cut(s)	64, 103, 220
ApeKI	GCWGC	1 cut(s)	126
AspLEI	GCGC	4 cut(s)	26, 33, 198, 261
AspS9I	GGNCC	2 cut(s)	64, 221
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	10
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	2 cut(s)	67, 127
BlsI	GCNGC	2 cut(s)	68, 128
Bme1390I	CCNGG	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	64, 221
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	150
BoxI	GACNNNNGTC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	87, 268
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	87, 268
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
BseRI	GAGGAG	2 cut(s)	86, 146
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	66, 105, 222
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	9, 147
BslI	CCNNNNNNNGG	4 cut(s)	15, 61, 130, 218
BsnI	GGCC	3 cut(s)	66, 105, 222
Bsp1286I	GDGCHC	2 cut(s)	96, 241
Bsp143I	GATC	3 cut(s)	18, 135, 249
BspACI	CCGC	3 cut(s)	67, 124, 243
BspANI	GGCC	3 cut(s)	66, 105, 222
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	26, 244
BssECI	CCNNGG	2 cut(s)	87, 268
BssMI	GATC	3 cut(s)	18, 135, 249
BssT1I	CCWWGG	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	4 cut(s)	26, 33, 198, 261
BstKTI	GATC	3 cut(s)	21, 138, 252
BstMBI	GATC	3 cut(s)	18, 135, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	61
BstPAI	GACNNNNGTC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	3 cut(s)	18, 135, 249
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	3 cut(s)	18, 135, 249
BsuRI	GGCC	3 cut(s)	66, 105, 222
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	279
CfoI	GCGC	4 cut(s)	26, 33, 198, 261
Cfr13I	GGNCC	2 cut(s)	64, 221
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	4 cut(s)	58, 178, 199, 218
CviJI	RGCY	7 cut(s)	66, 74, 94, 105, 153, 211, 222
CviKI_1	RGCY	7 cut(s)	66, 74, 94, 105, 153, 211, 222
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	3 cut(s)	20, 137, 251
DpnII	GATC	3 cut(s)	18, 135, 249
EaeI	YGGCCR	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	4 cut(s)	61, 181, 202, 221
FaiI	YATR	4 cut(s)	59, 179, 200, 219
FalI	AAGNNNNNCTT	1 cut(s)	284
FatI	CATG	4 cut(s)	57, 177, 198, 217
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	67, 127
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	67, 127
GlaI	GCGC	4 cut(s)	25, 32, 197, 260
GluI	GCNGC	2 cut(s)	67, 127
HaeIII	GGCC	3 cut(s)	66, 105, 222
HapII	CCGG	2 cut(s)	9, 147
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	4 cut(s)	26, 33, 198, 261
Hin1II	CATG	4 cut(s)	61, 181, 202, 221
Hin6I	GCGC	4 cut(s)	24, 31, 196, 259
HinP1I	GCGC	4 cut(s)	24, 31, 196, 259
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	2 cut(s)	9, 147
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	61, 181, 202, 221
HspAI	GCGC	4 cut(s)	24, 31, 196, 259
Kzo9I	GATC	3 cut(s)	18, 135, 249
LmnI	GCTCC	2 cut(s)	91, 99
LpnPI	CCDG	5 cut(s)	22, 119, 145, 160, 241
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	3 cut(s)	20, 137, 251
MboI	GATC	3 cut(s)	18, 135, 249
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	3 cut(s)	18, 135, 249
MhlI	GDGCHC	2 cut(s)	96, 241
MnlI	CCTC	5 cut(s)	107, 124, 174, 223, 263
MseI	TTAA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	2 cut(s)	9, 147
MspR9I	CCNGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	18, 135, 249
NlaIII	CATG	4 cut(s)	61, 181, 202, 221
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	234
PciI	ACATGT	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	68, 128
PscI	ACATGT	1 cut(s)	57
PshAI	GACNNNNGTC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	64, 221
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
PsuI	RGATCY	3 cut(s)	18, 135, 249
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	2 cut(s)	67, 127
Sau3AI	GATC	3 cut(s)	18, 135, 249
Sau96I	GGNCC	2 cut(s)	64, 221
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	96, 241
SetI	ASST	3 cut(s)	96, 114, 185
SfaNI	GCATC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	234
SsiI	CCGC	3 cut(s)	67, 124, 243
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	87
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	185, 215
TspGWI	ACGGA	2 cut(s)	224, 257
Van91I	CCANNNNNTGG	1 cut(s)	61
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.