Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

19551335 .. 19552424

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCTTAATATTTGGTTGCGTATGCAGAGGCCCGCGGTTGACAAAACCCTTAGCTGTGAGAGAGAATCCGAGTGTGCGAAATTGGTGTCCGGCTCAGGAATCTGCGCGAAGCAAGTGGTGGTAGTGACCAAGGACCTTCTCAACGGCCAGCCGACCGCAGTCGTGCGCGCCGAGCAGATCGCCATATCAGGAGGTCTGGTGAGGCAGAAGCTGAAGTACATGAAGTTCCTCAGGAAGCGCATGAATACCCAACCCTCTCCCGCCGAAATCTTCTGGCGCAACGTCCGAGGGATTCCGCACAAGACTAAGTGCGGGCTCTGGCGAGCCGAAGGTTTACGAGGGCATCCTACCGCCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

120

Amino Acids

13.35

Weight (kDa)

10.4

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	35, 107, 168
AciI	CCGC	7 cut(s)	33, 35, 156, 261, 296, 312, 351
AcoI	YGGCCR	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	218
AluBI	AGCT	2 cut(s)	54, 211
AluI	AGCT	2 cut(s)	54, 211
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	2 cut(s)	29, 145
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	5 cut(s)	107, 168, 170, 240, 279
AspS9I	GGNCC	2 cut(s)	30, 133
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	133
AxyI	CCTNAGG	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	318
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BceAI	ACGGC	2 cut(s)	160, 338
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	30, 133
BmsI	GCATC	1 cut(s)	352
BoxI	GACNNNNGTC	1 cut(s)	158
Bpu10I	CCTNAGC	2 cut(s)	50, 94
BsaJI	CCNNGG	3 cut(s)	33, 129, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bse21I	CCTNAGG	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	33, 129, 286
BseGI	GGATG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	108, 244
BsePI	GCGCGC	1 cut(s)	166
Bsh1236I	CGCG	3 cut(s)	35, 107, 168
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	31, 147
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	90
BsnI	GGCC	2 cut(s)	31, 147
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	7 cut(s)	33, 35, 156, 261, 296, 312, 351
BspANI	GGCC	2 cut(s)	31, 147
BspCNI	CTCAG	2 cut(s)	107, 243
BspFNI	CGCG	3 cut(s)	35, 107, 168
BssECI	CCNNGG	3 cut(s)	33, 129, 286
BssHII	GCGCGC	1 cut(s)	166
BssMI	GATC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	129
BstC8I	GCNNGC	5 cut(s)	33, 149, 168, 314, 324
BstDEI	CTNAG	4 cut(s)	50, 94, 230, 306
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	3 cut(s)	35, 107, 168
BstHHI	GCGC	5 cut(s)	107, 168, 170, 240, 279
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstPAI	GACNNNNGTC	1 cut(s)	158
BstUI	CGCG	3 cut(s)	35, 107, 168
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	31, 147
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	5 cut(s)	33, 149, 168, 314, 324
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	5 cut(s)	107, 168, 170, 240, 279
Cfr13I	GGNCC	2 cut(s)	30, 133
Cfr42I	CCGCGG	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	220, 241
CviJI	RGCY	8 cut(s)	31, 54, 93, 147, 151, 211, 316, 326
CviKI_1	RGCY	8 cut(s)	31, 54, 93, 147, 151, 211, 316, 326
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	4 cut(s)	50, 94, 230, 306
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	223, 244
FaiI	YATR	5 cut(s)	23, 185, 221, 242, 358
FatI	CATG	2 cut(s)	219, 240
FauI	CCCGC	3 cut(s)	40, 268, 305
FokI	GGATG	1 cut(s)	330
FriOI	GRGCYC	1 cut(s)	318
GlaI	GCGC	5 cut(s)	106, 167, 169, 239, 278
HaeIII	GGCC	2 cut(s)	31, 147
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	5 cut(s)	107, 168, 170, 240, 279
Hin1II	CATG	2 cut(s)	223, 244
Hin6I	GCGC	5 cut(s)	105, 166, 168, 238, 277
HinP1I	GCGC	5 cut(s)	105, 166, 168, 238, 277
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	65, 99, 292
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	40, 335
Hpy188I	TCNGA	2 cut(s)	70, 287
Hpy188III	TCNNGA	3 cut(s)	96, 189, 232
Hpy8I	GTNNAC	2 cut(s)	40, 335
HpyAV	CCTTC	2 cut(s)	146, 323
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	4 cut(s)	50, 94, 230, 306
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	223, 244
HspAI	GCGC	5 cut(s)	105, 166, 168, 238, 277
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	177
LpnPI	CCDG	8 cut(s)	81, 103, 161, 174, 182, 217, 259, 304
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	7 cut(s)	21, 185, 195, 239, 265, 281, 332
MseI	TTAA	1 cut(s)	6
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	90
MvnI	CGCG	3 cut(s)	35, 107, 168
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	223, 244
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	124
PauI	GCGCGC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	65, 99, 292
PpuMI	RGGWCCY	1 cut(s)	133
PshAI	GACNNNNGTC	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	30, 133
PspPPI	RGGWCCY	1 cut(s)	133
PsrI	GAACNNNNNNTAC	2 cut(s)	209, 241
PstNI	CAGNNNCTG	1 cut(s)	211
PteI	GCGCGC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SacII	CCGCGG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	30, 133
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	56, 138, 196, 213, 285, 334
SfaNI	GCATC	1 cut(s)	352
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	133
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	7 cut(s)	33, 35, 156, 261, 296, 312, 351
SspI	AATATT	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	285
TasI	AATT	1 cut(s)	80
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	65, 99, 292
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	236, 257
VpaK11BI	GGWCC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.