Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

15157252 .. 15159334

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTTTCTGGGTCAGGAATCTGCGCCAAGCGCGTGGTGGTTGACGCGCGTCACCACATGCTCGGTCGCTTGGCTTCCATCATCGCCAAGGAGCTCCTGAACGGCCAGAAGGTGGTCGTCGTTCGCTGCGAGGAGATCTGCATCTCCGGTGGACTTGTGAGACAAAAGATGAAGTACATGCGCTTCTTGCGTAAGCGCATGAACACCAAGCCCTCTCACGGCCCCATTCACTTCCGCGCCCCTGCTAAGATCCTCTGGCGCACCATCCGTGGGATGATTCCACACAAGACCAAGCGTGGAGCTGCCGCTCTTGCCCGTCTGAAGGCCTATGAGGGAATTCCACCACCTTATGACAAGATTAAGAGGATGGTTATTCCTGATGCTCTCAAGGTCTTGAGGCTACAAGCAGGACACAAATACTGTTTGTTGGGCAAGCTTTCCTCAGAGGTTGGATGGAACCACTACGACACTATCAGGGAGCTTGAGAAGAAGAGGAAGGAAAGGTCTCAGATTGCATATGAGAGGAAGAAACAGCTTAACAAACTGAGAGTCAAAGCAGAGAAGGTTGCTGAGGAGAAACTTGGTCCTCATCTAGAGATAATTGCTCCTATCAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

207

Amino Acids

23.6

Weight (kDa)

10.4

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	11 - 115	1.1e-22	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	308
AccII	CGCG	4 cut(s)	33, 47, 49, 237
AciI	CCGC	2 cut(s)	235, 306
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	176, 617
AfiI	CCNNNNNNNGG	4 cut(s)	112, 218, 270, 322
AluBI	AGCT	5 cut(s)	94, 302, 436, 481, 535
AluI	AGCT	5 cut(s)	94, 302, 436, 481, 535
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	154, 510
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	3 cut(s)	103, 220, 324
ApeKI	GCWGC	2 cut(s)	126, 302
ApoI	RAATTY	1 cut(s)	336
ArsI	GACNNNNNNTTYG	2 cut(s)	534, 566
AspLEI	GCGC	7 cut(s)	26, 33, 49, 183, 198, 239, 261
AspS9I	GGNCC	2 cut(s)	221, 584
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	167, 199
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	113, 289
BccI	CCATC	4 cut(s)	86, 272, 361, 447
BceAI	ACGGC	2 cut(s)	118, 235
BcoDI	GTCTC	2 cut(s)	154, 510
BfaI	CTAG	1 cut(s)	593
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	3 cut(s)	127, 303, 306
BlsI	GCNGC	3 cut(s)	128, 304, 307
BmcAI	AGTACT	1 cut(s)	617
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	221, 584
BmiI	GGNNCC	2 cut(s)	223, 458
BmsI	GCATC	2 cut(s)	150, 370
BoxI	GACNNNNGTC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	3 cut(s)	371, 415, 503
BsaBI	GATNNNNATC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	87, 268
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 218, 270, 322
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	87, 268
BseGI	GGATG	4 cut(s)	264, 279, 372, 458
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	4 cut(s)	112, 218, 270, 322
BseMII	CTCAG	4 cut(s)	456, 521, 536, 561
BseRI	GAGGAG	2 cut(s)	146, 587
BseXI	GCAGC	2 cut(s)	113, 289
Bsh1236I	CGCG	4 cut(s)	33, 47, 49, 237
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	105, 222, 326
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	4 cut(s)	112, 218, 270, 322
BsmAI	GTCTC	2 cut(s)	154, 510
BsnI	GGCC	3 cut(s)	105, 222, 326
Bso31I	GGTCTC	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	135, 249
BspACI	CCGC	2 cut(s)	235, 306
BspANI	GGCC	3 cut(s)	105, 222, 326
BspCNI	CTCAG	4 cut(s)	455, 520, 537, 562
BspFNI	CGCG	4 cut(s)	33, 47, 49, 237
BspLI	GGNNCC	2 cut(s)	223, 458
BspPI	GGATC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	510
BsrBI	CCGCTC	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	87, 268
BssMI	GATC	2 cut(s)	135, 249
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	5 cut(s)	246, 442, 507, 545, 570
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	4 cut(s)	264, 279, 372, 458
BstFNI	CGCG	4 cut(s)	33, 47, 49, 237
BstHHI	GCGC	7 cut(s)	26, 33, 49, 183, 198, 239, 261
BstKTI	GATC	2 cut(s)	138, 252
BstMAI	GTCTC	2 cut(s)	154, 510
BstMBI	GATC	2 cut(s)	135, 249
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 187, 311
BstNSI	RCATGY	2 cut(s)	61, 181
BstPAI	GACNNNNGTC	1 cut(s)	48
BstUI	CGCG	4 cut(s)	33, 47, 49, 237
BstV1I	GCAGC	2 cut(s)	113, 289
BstX2I	RGATCY	2 cut(s)	135, 249
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	2 cut(s)	135, 249
BsuRI	GGCC	3 cut(s)	105, 222, 326
BtgI	CCRYGG	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	264, 279, 372, 458
Cac8I	GCNNGC	1 cut(s)	434
CfoI	GCGC	7 cut(s)	26, 33, 49, 183, 198, 239, 261
Cfr13I	GGNCC	2 cut(s)	221, 584
CseI	GACGC	2 cut(s)	38, 53
Csp6I	GTAC	2 cut(s)	175, 616
CviAII	CATG	3 cut(s)	58, 178, 199
CviQI	GTAC	2 cut(s)	175, 616
DdeI	CTNAG	5 cut(s)	246, 442, 507, 545, 570
DpnI	GATC	2 cut(s)	137, 251
DpnII	GATC	2 cut(s)	135, 249
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	584
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	61, 181, 202
FaiI	YATR	7 cut(s)	59, 179, 200, 330, 351, 517, 519
FatI	CATG	3 cut(s)	57, 177, 198
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	127, 303, 306
FokI	GGATG	4 cut(s)	251, 286, 379, 465
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	127, 303, 306
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	7 cut(s)	25, 32, 48, 182, 197, 238, 260
GluI	GCNGC	3 cut(s)	127, 303, 306
HaeIII	GGCC	3 cut(s)	105, 222, 326
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	2 cut(s)	38, 53
HhaI	GCGC	7 cut(s)	26, 33, 49, 183, 198, 239, 261
Hin1II	CATG	3 cut(s)	61, 181, 202
Hin6I	GCGC	7 cut(s)	24, 31, 47, 181, 196, 237, 259
HinP1I	GCGC	7 cut(s)	24, 31, 47, 181, 196, 237, 259
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	18, 277, 549
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	43, 152
Hpy188I	TCNGA	3 cut(s)	321, 445, 510
Hpy188III	TCNNGA	5 cut(s)	15, 97, 377, 394, 593
Hpy8I	GTNNAC	2 cut(s)	43, 152
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	4 cut(s)	103, 316, 490, 556
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	2 cut(s)	141, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 187, 311
HpyF3I	CTNAG	5 cut(s)	246, 442, 507, 545, 570
Hsp92II	CATG	3 cut(s)	61, 181, 202
HspAI	GCGC	7 cut(s)	24, 31, 47, 181, 196, 237, 259
Kzo9I	GATC	2 cut(s)	135, 249
LmnI	GCTCC	5 cut(s)	91, 99, 299, 478, 610
LpnPI	CCDG	8 cut(s)	110, 119, 160, 241, 255, 390, 393, 460
Lsp1109I	GCAGC	2 cut(s)	113, 289
LweI	GCATC	2 cut(s)	150, 370
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	137, 251
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	2 cut(s)	135, 249
MboII	GAAGA	3 cut(s)	499, 502, 538
MflI	RGATCY	2 cut(s)	135, 249
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	336, 600
MlyI	GAGTC	1 cut(s)	558
MmeI	TCCRAC	1 cut(s)	430
MseI	TTAA	2 cut(s)	360, 537
MspI	CCGG	1 cut(s)	147
MvnI	CGCG	4 cut(s)	33, 47, 49, 237
MwoI	GCNNNNNNNGC	3 cut(s)	30, 187, 311
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	2 cut(s)	135, 249
NlaIII	CATG	3 cut(s)	61, 181, 202
NlaIV	GGNNCC	2 cut(s)	223, 458
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	2 cut(s)	61, 181
PceI	AGGCCT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	18, 277
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	128, 304, 307
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
PshAI	GACNNNNGTC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	223, 458
PspPI	GGNCC	2 cut(s)	221, 584
PsuI	RGATCY	2 cut(s)	135, 249
RsaI	GTAC	2 cut(s)	176, 617
RsaNI	GTAC	2 cut(s)	175, 616
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	360, 537
SatI	GCNGC	3 cut(s)	127, 303, 306
Sau3AI	GATC	2 cut(s)	135, 249
Sau96I	GGNCC	2 cut(s)	221, 584
ScaI	AGTACT	1 cut(s)	617
SchI	GAGTC	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	150, 370
SinI	GGWCC	1 cut(s)	584
SmlI	CTYRAG	3 cut(s)	386, 394, 482
SmoI	CTYRAG	3 cut(s)	386, 394, 482
Sse9I	AATT	2 cut(s)	336, 600
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	2 cut(s)	235, 306
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	422
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	336, 600
TatI	WGTACW	2 cut(s)	174, 615
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	18, 277
Tru1I	TTAA	2 cut(s)	360, 537
Tru9I	TTAA	2 cut(s)	360, 537
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	126, 302
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	185, 215
TspGWI	ACGGA	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	1 cut(s)	336
XbaI	TCTAGA	1 cut(s)	592
XceI	RCATGY	2 cut(s)	61, 181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XspI	CTAG	1 cut(s)	593
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.