Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

25518070 .. 25519586

Gene Structure 1517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1164200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAACTTTCCCTTTTATATACTCGCACAGAGTGAGGGTGAGAGAGAATCAGAGGGCGAGAAAATGGTGTCCGGCTCAGGAATCTGCGCGAAGCGAGTGGTGGTGGACGGGCGCCACCACATGCTCGGTCGTCTGGCGGCTGTTGTGGCCAAGGACCTTCTGAACGGCCAGCCGATCGCCGTCGTGCGCGCCGAGCAGATCGCCATATCGGGCGGTCTGGTGAGGCAGAAGATGAAGTACATGAGGTTCCTCAGGAAGCGCATGAACACCCAGCCCTCTCACGGCCCCATCCACTACCGCTCTCCCGCCAAAATCTTCTGGCGCACTGTCCGAGGGATGATCCCGCACAAGACTAAGCGCGGAGCTGAGGCTCTGGCGAGGCTGAAGGTTTACGAGGGCATCCCGCCGCCGTATGACAAGACGAAGAGGATGGTGGTTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAGGGCCACAAATACTGCTTGTTGGGTCAGCTTTCATCTGAGGTCGGATGGAACCATTATGACACAATCAAGGAGCTGGAGAACAAGAGAAAAGAGAGGGCTCAGTTGGAATATGAGAGGAAGAAGCAGCTAACCAAACTTAGGTTGAAGGCTGAAAAATCTGCAGAGGAGAAGATTGGTTCCCAGCTTGAACTCCTTTCTTCGGTGACATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

228

Amino Acids

25.97

Weight (kDa)

10.08

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	32 - 136	1.5e-21	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	300
AccII	CGCG	3 cut(s)	89, 189, 360
AciI	CCGC	8 cut(s)	137, 213, 298, 306, 344, 360, 404, 407
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	2 cut(s)	147, 166
AcuI	CTGAAG	2 cut(s)	404, 449
AcyI	GRCGYC	1 cut(s)	112
AdeI	CACNNNGTG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	3 cut(s)	281, 609, 670
AgsI	TTSAA	2 cut(s)	616, 659
AluBI	AGCT	5 cut(s)	365, 499, 544, 598, 655
AluI	AGCT	5 cut(s)	365, 499, 544, 598, 655
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	4 cut(s)	147, 166, 283, 472
ApeKI	GCWGC	1 cut(s)	595
AspLEI	GCGC	7 cut(s)	89, 114, 189, 191, 261, 324, 360
AspS9I	GGNCC	3 cut(s)	154, 284, 472
AsuHPI	GGTGA	2 cut(s)	50, 232
AvaII	GGWCC	1 cut(s)	154
AxyI	CCTNAGG	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	571
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	3 cut(s)	296, 424, 510
BceAI	ACGGC	4 cut(s)	164, 181, 298, 394
BfmI	CTRYAG	1 cut(s)	630
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	3 cut(s)	138, 407, 596
BlsI	GCNGC	3 cut(s)	139, 408, 597
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	154, 284, 472
BmiI	GGNNCC	6 cut(s)	113, 248, 286, 438, 521, 649
BmsI	GCATC	2 cut(s)	408, 433
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	2 cut(s)	76, 366
BpuEI	CTTGAG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	150, 331
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 609, 670
Bse21I	CCTNAGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	150, 331
BseGI	GGATG	5 cut(s)	288, 342, 399, 435, 521
BseLI	CCNNNNNNNGG	3 cut(s)	281, 609, 670
BseMII	CTCAG	5 cut(s)	90, 265, 357, 498, 584
BsePI	GCGCGC	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	1 cut(s)	607
BseYI	CCCAGC	2 cut(s)	270, 651
Bsh1236I	CGCG	3 cut(s)	89, 189, 360
Bsh1285I	CGRYCG	2 cut(s)	130, 177
BshFI	GGCC	4 cut(s)	149, 168, 285, 474
BshNI	GGYRCC	1 cut(s)	111
BsiEI	CGRYCG	2 cut(s)	130, 177
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	3 cut(s)	281, 609, 670
BsnI	GGCC	4 cut(s)	149, 168, 285, 474
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	3 cut(s)	174, 198, 339
BspACI	CCGC	8 cut(s)	137, 213, 298, 306, 344, 360, 404, 407
BspANI	GGCC	4 cut(s)	149, 168, 285, 474
BspCNI	CTCAG	5 cut(s)	89, 264, 358, 499, 583
BspFNI	CGCG	3 cut(s)	89, 189, 360
BspLI	GGNNCC	6 cut(s)	113, 248, 286, 438, 521, 649
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	300
BssECI	CCNNGG	2 cut(s)	150, 331
BssHII	GCGCGC	1 cut(s)	187
BssMI	GATC	3 cut(s)	174, 198, 339
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	419
BstACI	GRCGYC	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	170, 189
BstDEI	CTNAG	7 cut(s)	76, 251, 354, 366, 507, 570, 608
BstF5I	GGATG	5 cut(s)	288, 342, 399, 435, 521
BstFNI	CGCG	3 cut(s)	89, 189, 360
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	7 cut(s)	89, 114, 189, 191, 261, 324, 360
BstKTI	GATC	3 cut(s)	177, 201, 342
BstMBI	GATC	3 cut(s)	174, 198, 339
BstMCI	CGRYCG	2 cut(s)	130, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 193
BstNSI	RCATGY	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	3 cut(s)	89, 189, 360
BstV1I	GCAGC	1 cut(s)	607
Bsu36I	CCTNAGG	1 cut(s)	251
BsuRI	GGCC	4 cut(s)	149, 168, 285, 474
BtsCI	GGATG	5 cut(s)	288, 342, 399, 435, 521
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	170, 189
CfoI	GCGC	7 cut(s)	89, 114, 189, 191, 261, 324, 360
Cfr13I	GGNCC	3 cut(s)	154, 284, 472
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	3 cut(s)	121, 241, 262
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	7 cut(s)	76, 251, 354, 366, 507, 570, 608
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	3 cut(s)	176, 200, 341
DpnII	GATC	3 cut(s)	174, 198, 339
DraIII	CACNNNGTG	1 cut(s)	32
EaeI	YGGCCR	2 cut(s)	147, 166
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	404, 449
Eco81I	CCTNAGG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	571
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	124, 244, 265
FatI	CATG	3 cut(s)	120, 240, 261
FauI	CCCGC	3 cut(s)	313, 351, 411
Fnu4HI	GCNGC	3 cut(s)	138, 407, 596
FokI	GGATG	5 cut(s)	275, 349, 386, 442, 528
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	3 cut(s)	138, 407, 596
GlaI	GCGC	7 cut(s)	88, 113, 188, 190, 260, 323, 359
GluI	GCNGC	3 cut(s)	138, 407, 596
GsaI	CCCAGC	2 cut(s)	274, 655
GsuI	CTGGAG	1 cut(s)	566
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	4 cut(s)	149, 168, 285, 474
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	7 cut(s)	89, 114, 189, 191, 261, 324, 360
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	124, 244, 265
Hin6I	GCGC	7 cut(s)	87, 112, 187, 189, 259, 322, 358
HinP1I	GCGC	7 cut(s)	87, 112, 187, 189, 259, 322, 358
HinfI	GANTC	2 cut(s)	47, 81
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	50, 232
Hpy166II	GTNNAC	2 cut(s)	106, 391
Hpy188I	TCNGA	6 cut(s)	52, 162, 332, 468, 508, 515
Hpy188III	TCNNGA	3 cut(s)	78, 253, 440
Hpy8I	GTNNAC	2 cut(s)	106, 391
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	167, 379, 463, 610
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 193
HpyF3I	CTNAG	7 cut(s)	76, 251, 354, 366, 507, 570, 608
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	3 cut(s)	124, 244, 265
HspAI	GCGC	7 cut(s)	87, 112, 187, 189, 259, 322, 358
KasI	GGCGCC	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	174, 198, 339
LmnI	GCTCC	2 cut(s)	362, 541
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	2 cut(s)	408, 433
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	3 cut(s)	176, 200, 341
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	3 cut(s)	174, 198, 339
MboII	GAAGA	6 cut(s)	241, 307, 436, 601, 652, 660
MhlI	GDGCHC	1 cut(s)	571
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
Mly113I	GGCGCC	1 cut(s)	112
MmeI	TCCRAC	2 cut(s)	493, 555
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	682
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	1 cut(s)	72
MvnI	CGCG	3 cut(s)	89, 189, 360
MwoI	GCNNNNNNNGC	2 cut(s)	146, 193
NarI	GGCGCC	1 cut(s)	112
NdeII	GATC	3 cut(s)	174, 198, 339
NlaIII	CATG	3 cut(s)	124, 244, 265
NlaIV	GGNNCC	6 cut(s)	113, 248, 286, 438, 521, 649
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	1 cut(s)	124
PauI	GCGCGC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	47, 81
PkrI	GCNGC	3 cut(s)	139, 408, 597
Ple19I	CGATCG	1 cut(s)	177
PluTI	GGCGCC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
PspFI	CCCAGC	2 cut(s)	270, 651
PspN4I	GGNNCC	6 cut(s)	113, 248, 286, 438, 521, 649
PspPI	GGNCC	3 cut(s)	154, 284, 472
PspPPI	RGGWCCY	1 cut(s)	154
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
PstI	CTGCAG	1 cut(s)	634
PteI	GCGCGC	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	177
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	682
SatI	GCNGC	3 cut(s)	138, 407, 596
Sau3AI	GATC	3 cut(s)	174, 198, 339
Sau96I	GGNCC	3 cut(s)	154, 284, 472
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	408, 433
SfcI	CTRYAG	1 cut(s)	630
SfoI	GGCGCC	1 cut(s)	113
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SsiI	CCGC	8 cut(s)	137, 213, 298, 306, 344, 360, 404, 407
SspDI	GGCGCC	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	328
TaqII	GACCGA	1 cut(s)	116
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	140, 409
TfiI	GAWTC	2 cut(s)	47, 81
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	1 cut(s)	595
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	4 cut(s)	17, 248, 278, 492
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.