Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

7653594 .. 7656594

Gene Structure 3001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGTCTGGGTCAGGGATATGCGCGAAGCGCGTTGTCGTCGACGGGCGACACCACATGCTTGGTCGTCTAGCTTCCAACACTGCGAAGGAGTTACTTAACGGACAGGAAGTGGTTGTTGTCCGATGTGAAGAGATTTGTCTCTCGGGAGGTTTGGTTCGACAAAAGATGAAGTACATGAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACTTTCGTGCTCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCACTTGCTCGCTTGAAGGTTTTTGAGGGAATCCCACCTCCTTACGACAAGATTAAGAGAATGGTTATTCCTGATGCTCTTAAGGTTTTGAGACTTCAGAGTGGTCACAAGTACTGCTTATTGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAAGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGAAGCAACTCAACAAGCTCAGGACCAAGGCAGAGAAGGTTGCGGAAGAGAGGCTCGGATCACAGCTAGATGTTCTTGCCCCGGTCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

206

Amino Acids

23.63

Weight (kDa)

10.39

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	11 - 115	4.4e-22	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	3 cut(s)	26, 33, 270
AciI	CCGC	2 cut(s)	270, 569
AclWI	GGATC	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	176, 419
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	1 cut(s)	322
AleI	CACNNNNGTG	1 cut(s)	234
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	3 cut(s)	74, 544, 592
AluI	AGCT	3 cut(s)	74, 544, 592
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	3 cut(s)	146, 391, 479
AlwI	GGATC	1 cut(s)	592
Ama87I	CYCGRG	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	302, 305
AspLEI	GCGC	3 cut(s)	26, 33, 261
AspS9I	GGNCC	2 cut(s)	221, 549
AsuC2I	CCSGG	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	221, 549
AxyI	CCTNAGG	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	289, 292
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	3 cut(s)	146, 391, 479
BfaI	CTAG	2 cut(s)	71, 593
BfrI	CTTAAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	608
Bme18I	GGWCC	2 cut(s)	221, 549
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	221, 549
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	552, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse21I	CCTNAGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	552, 606
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	435, 559
BseXI	GCAGC	2 cut(s)	289, 292
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	3 cut(s)	26, 33, 270
BsiHKAI	GWGCWC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	3 cut(s)	146, 391, 479
BsmFI	GGGAC	1 cut(s)	444
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	249, 503, 584
BspACI	CCGC	2 cut(s)	270, 569
BspCNI	CTCAG	2 cut(s)	436, 558
BspFNI	CGCG	3 cut(s)	26, 33, 270
BspLI	GGNNCC	1 cut(s)	458
BspPI	GGATC	1 cut(s)	592
BspTI	CTTAAG	1 cut(s)	386
BssECI	CCNNGG	2 cut(s)	552, 606
BssMI	GATC	3 cut(s)	249, 503, 584
BssT1I	CCWWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	126, 567
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	4 cut(s)	188, 207, 444, 545
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	3 cut(s)	26, 33, 270
BstHHI	GCGC	3 cut(s)	26, 33, 261
BstKTI	GATC	3 cut(s)	252, 506, 587
BstMAI	GTCTC	3 cut(s)	146, 391, 479
BstMBI	GATC	3 cut(s)	249, 503, 584
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 267, 311, 529
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	606
BstUI	CGCG	3 cut(s)	26, 33, 270
BstV1I	GCAGC	2 cut(s)	289, 292
BstX2I	RGATCY	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 261
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	3 cut(s)	26, 33, 261
Cfr13I	GGNCC	2 cut(s)	221, 549
Csp6I	GTAC	2 cut(s)	175, 418
CviAII	CATG	3 cut(s)	58, 178, 218
CviJI	RGCY	6 cut(s)	74, 211, 453, 544, 580, 592
CviKI_1	RGCY	6 cut(s)	74, 211, 453, 544, 580, 592
CviQI	GTAC	2 cut(s)	175, 418
DdeI	CTNAG	4 cut(s)	188, 207, 444, 545
DpnI	GATC	3 cut(s)	251, 505, 586
DpnII	GATC	3 cut(s)	249, 503, 584
Eam1104I	CTCTTC	2 cut(s)	126, 567
EarI	CTCTTC	2 cut(s)	126, 567
Eco130I	CCWWGG	1 cut(s)	552
Eco47I	GGWCC	2 cut(s)	221, 549
Eco57I	CTGAAG	1 cut(s)	386
Eco81I	CCTNAGG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	3 cut(s)	61, 181, 221
FaiI	YATR	7 cut(s)	22, 59, 179, 200, 219, 465, 519
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	3 cut(s)	57, 177, 217
FauI	CCCGC	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	303, 306
FspBI	CTAG	2 cut(s)	71, 593
GlaI	GCGC	3 cut(s)	25, 32, 260
GluI	GCNGC	2 cut(s)	303, 306
HapII	CCGG	1 cut(s)	608
HhaI	GCGC	3 cut(s)	26, 33, 261
Hin1II	CATG	3 cut(s)	61, 181, 221
Hin6I	GCGC	3 cut(s)	24, 31, 259
HinP1I	GCGC	3 cut(s)	24, 31, 259
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	3 cut(s)	183, 277, 336
HpaII	CCGG	1 cut(s)	608
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	4 cut(s)	125, 405, 445, 584
Hpy188III	TCNNGA	3 cut(s)	147, 377, 547
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	44, 47
HpyAV	CCTTC	5 cut(s)	82, 222, 252, 316, 556
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	2 cut(s)	196, 433
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 267, 311, 529
HpyF3I	CTNAG	4 cut(s)	188, 207, 444, 545
HpySE526I	ACGT	2 cut(s)	196, 433
Hsp92II	CATG	3 cut(s)	61, 181, 221
HspAI	GCGC	3 cut(s)	24, 31, 259
Kzo9I	GATC	3 cut(s)	249, 503, 584
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	92, 241, 390, 439, 532
Lsp1109I	GCAGC	2 cut(s)	289, 292
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	71, 593
MaeII	ACGT	2 cut(s)	196, 433
MaeIII	GTNAC	2 cut(s)	93, 410
MalI	GATC	3 cut(s)	251, 505, 586
MboI	GATC	3 cut(s)	249, 503, 584
MboII	GAAGA	4 cut(s)	143, 244, 432, 584
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	143, 325, 354, 439, 570
MseI	TTAA	4 cut(s)	99, 360, 387, 474
MslI	CAYNNNNRTG	1 cut(s)	234
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	608
MvnI	CGCG	3 cut(s)	26, 33, 270
MwoI	GCNNNNNNNGC	4 cut(s)	30, 267, 311, 529
NciI	CCSGG	1 cut(s)	608
NdeII	GATC	3 cut(s)	249, 503, 584
NlaIII	CATG	3 cut(s)	61, 181, 221
NlaIV	GGNNCC	1 cut(s)	458
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	183, 277, 336
PkrI	GCNGC	2 cut(s)	304, 307
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	2 cut(s)	221, 549
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	2 cut(s)	176, 419
RsaNI	GTAC	2 cut(s)	175, 418
RseI	CAYNNNNRTG	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	99, 360, 387, 474
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	3 cut(s)	249, 503, 584
Sau96I	GGNCC	2 cut(s)	221, 549
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	608
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	370
SgrDI	CGTCGACG	1 cut(s)	41
SinI	GGWCC	2 cut(s)	221, 549
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	386, 482
SmoI	CTYRAG	2 cut(s)	386, 482
SsiI	CCGC	2 cut(s)	270, 569
SspMI	CTAG	2 cut(s)	71, 593
StyD4I	CCNGG	1 cut(s)	606
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	2 cut(s)	199, 436
TaqI	TCGA	2 cut(s)	42, 160
TatI	WGTACW	2 cut(s)	174, 417
TfiI	GAWTC	3 cut(s)	183, 277, 336
Tru1I	TTAA	4 cut(s)	99, 360, 387, 474
Tru9I	TTAA	4 cut(s)	99, 360, 387, 474
TscAI	CASTG	2 cut(s)	88, 268
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	302, 305
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	185, 215
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	2 cut(s)	88, 268
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	221, 549
XceI	RCATGY	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	2 cut(s)	71, 593
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.