Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

30299075 .. 30299548

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1175100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCAGGGCCTGCGGTTAACAAAAACCCTAGCTGTGAGAGAGAAGCGAGTGGTGGTGACCAATGACCTTCTCAAAGGCCAGCTGACCGCAGTCGTGTGCGCCGAGCAGATCGCCATATTAGAAGGTTTGGTGAGGCAGAAGCTAAAGTACATGAAGTTCCTCAGGAAACGCATGAACACCCTACCCTCTCCCGCCAAAATCTTCTGGCACAACGTCCGAGGGGATTTGAGGCTTCTGAATGGCCACAAATATTGCTTGTTGGGTCAGCTTTCGTCTGAGGTCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

96

Amino Acids

10.82

Weight (kDa)

10.4

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	13, 87, 192
AcoI	YGGCCR	1 cut(s)	241
AfaI	GTAC	1 cut(s)	149
AluBI	AGCT	4 cut(s)	32, 82, 142, 268
AluI	AGCT	4 cut(s)	32, 82, 142, 268
AlwNI	CAGNNNCTG	1 cut(s)	10
AoxI	GGCC	3 cut(s)	7, 76, 241
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	67, 142
AxyI	CCTNAGG	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	243
BarI	GAAGNNNNNNTAC	2 cut(s)	131, 163
BfaI	CTAG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	7
BoxI	GACNNNNGTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	175, 267
BshFI	GGCC	3 cut(s)	9, 78, 243
BsnI	GGCC	3 cut(s)	9, 78, 243
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	3 cut(s)	13, 87, 192
BspANI	GGCC	3 cut(s)	9, 78, 243
BspCNI	CTCAG	2 cut(s)	174, 268
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	11, 80
BstDEI	CTNAG	2 cut(s)	161, 276
BstEII	GGTNACC	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstPAI	GACNNNNGTC	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	161
BsuRI	GGCC	3 cut(s)	9, 78, 243
Cac8I	GCNNGC	2 cut(s)	11, 80
CaiI	CAGNNNCTG	1 cut(s)	10
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	233, 268
CviAII	CATG	2 cut(s)	151, 172
CviJI	RGCY	8 cut(s)	9, 32, 78, 82, 142, 232, 243, 268
CviKI_1	RGCY	8 cut(s)	9, 32, 78, 82, 142, 232, 243, 268
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	161, 276
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	241
Eco81I	CCTNAGG	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	55
FaeI	CATG	2 cut(s)	154, 175
FaiI	YATR	3 cut(s)	116, 152, 173
FatI	CATG	2 cut(s)	150, 171
FauI	CCCGC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	9, 78, 243
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	154, 175
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HpaI	GTTAAC	1 cut(s)	18
HphI	GGTGA	2 cut(s)	67, 142
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	4 cut(s)	218, 237, 277, 284
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	77, 116
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	161, 276
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	154, 175
HspAI	GCGC	1 cut(s)	99
KspAI	GTTAAC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	4 cut(s)	23, 92, 148, 190
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	243
MluNI	TGGCCA	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	6 cut(s)	126, 170, 196, 212, 222, 271
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	154, 175
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PshAI	GACNNNNGTC	1 cut(s)	89
PspEI	GGTNACC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	7
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PstNI	CAGNNNCTG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	17
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	8 cut(s)	34, 69, 84, 127, 144, 216, 270, 282
SsiI	CCGC	3 cut(s)	13, 87, 192
SspI	AATATT	1 cut(s)	251
SspMI	CTAG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	167, 188
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.