Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Reverse (-)

25084008 .. 25085168

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0265500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTTCTTTAAACATAGATCAGAATTTGGTACGTCAACGGATGATGGAGATTGATATGGAGCGTCGGCCGTCTCTCGATCGAAGCTATCGCTGCTATTCTGCAGCTTTCTTGGACAAAAACCAAGCTGCGAAACTCGAAACCGGTGACAAAATCTTTATGCCACCCTCAGCCCTCAGAGTCCTTTTGTCTCGGCCCAGCAGTAACCCGATGCTCTTCCAGCTACGAAACCCGAATGCTGCCGAGAGAGAGTTGGTTTCACACTGTGGGGTTTTGGAGTTCACTGCATTAGAAGACACCATTTATATGCCTTCCTGGAAGATGAAGAGCCTGGACTTGGAAGAGGGAGAGTTTGTTCAAGTCAAGAATGTGACTCTTCCAAAAGGCAAATTCGTTAAATTGCAACCCCACACCAAAAACTTCTTGGACATTGCAAATCCGAGAGCTGTGTTGGAGACAACACTGAGGAGTTTTACATGTTTCACAACTGGTGATACTATTAAGCTGCCTTATAATGGCAAGGAATACTATGTGGATATCGTAGAAACAAAGCCTGGTAAGGCCATAAGTATCGTTGACATAGACTGTGAAGTTGACTTTGCGCCTCCTCGCGACTATAAGGAACCCGAGATGCCTGTTGCTGCAGCTTCTCCTCCGACAAACAAGGCGGCATTGGTGGCAGCTGATCAGATTGAAGAACCTAAATTCAACCCTTTTACCGGAGCTGGAAGGCGTTTGGATGGAAAACCTTTGTCCGCTGCCCCAGTTTCTTCTTCCTCATTAGTTGCAGCAGCCAATAATGGTAAGGGAAATGCACAGCCATCGAATACAGGATCCAGCTCACAAGGGACCAGTCGTCGGGCTCAGGGGAAGCTTGTTTTCGGATCAAATGCTGCCAACCGTACTACTACTCCTCCAAAGGAAACAGAAAAGGAAGCTTCAAAAGAGCAGGCTAAGCCAGAAAAGAAAGAAGATCCAAAGTTCCAGCCCTTTACAGGGAAAAGGTACTCATTAAAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

340

Amino Acids

37.5

Weight (kDa)

9.06

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	27 - 127	7e-29	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	128 - 203	5.8e-33	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccII	CGCG	1 cut(s)	612
AciI	CCGC	2 cut(s)	668, 756
AclWI	GGATC	4 cut(s)	828, 841, 892, 968
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	3 cut(s)	25, 389, 704
AdeI	CACNNNGTG	1 cut(s)	266
AfaI	GTAC	3 cut(s)	33, 904, 1007
AfiI	CCNNNNNNNGG	6 cut(s)	337, 515, 719, 858, 995, 996
AflIII	ACRYGT	1 cut(s)	476
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	359, 695, 709, 942
AhdI	GACNNNNNGTC	1 cut(s)	855
AjnI	CCWGG	3 cut(s)	314, 330, 553
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
Alw26I	GTCTC	3 cut(s)	78, 195, 449
AlwI	GGATC	4 cut(s)	828, 841, 892, 968
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	3 cut(s)	68, 194, 561
ApoI	RAATTY	3 cut(s)	25, 389, 704
AsiGI	ACCGGT	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	2 cut(s)	195, 849
AsuHPI	GGTGA	2 cut(s)	158, 503
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	849
BamHI	GGATCC	1 cut(s)	833
BanII	GRGCYC	1 cut(s)	865
BbsI	GAAGAC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	40, 734, 829
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	804, 838
BciT130I	CCWGG	3 cut(s)	316, 332, 555
BclI	TGATCA	1 cut(s)	685
BcoDI	GTCTC	3 cut(s)	78, 195, 449
BfmI	CTRYAG	2 cut(s)	102, 642
BlpI	GCTNAGC	1 cut(s)	954
Bme1390I	CCNGG	3 cut(s)	316, 332, 555
Bme18I	GGWCC	1 cut(s)	849
BmeRI	GACNNNNNGTC	1 cut(s)	855
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	195, 849
BmiI	GGNNCC	3 cut(s)	624, 835, 850
BmrFI	CCNGG	3 cut(s)	316, 332, 555
BmrI	ACTGGG	1 cut(s)	758
BmsI	GCATC	2 cut(s)	201, 621
BmuI	ACTGGG	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	300
Bpu10I	CCTNAGC	2 cut(s)	169, 864
Bpu1102I	GCTNAGC	1 cut(s)	954
BsaWI	WCCGGW	2 cut(s)	143, 719
BsaXI	ACNNNNNCTCC	6 cut(s)	339, 369, 895, 898, 925, 928
Bsc4I	CCNNNNNNNGG	6 cut(s)	337, 515, 719, 858, 995, 996
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	3 cut(s)	493, 764, 852
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	316, 332, 555
BseGI	GGATG	2 cut(s)	48, 745
BseLI	CCNNNNNNNGG	6 cut(s)	337, 515, 719, 858, 995, 996
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	4 cut(s)	183, 190, 455, 878
BseNI	ACTGG	3 cut(s)	493, 764, 852
BseRI	GAGGAG	4 cut(s)	481, 597, 642, 903
BseX3I	CGGCCG	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	612
Bsh1285I	CGRYCG	2 cut(s)	71, 82
BshFI	GGCC	3 cut(s)	70, 196, 563
BshTI	ACCGGT	1 cut(s)	143
BsiEI	CGRYCG	2 cut(s)	71, 82
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	2 cut(s)	144, 720
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	6 cut(s)	337, 515, 719, 858, 995, 996
BsmAI	GTCTC	3 cut(s)	78, 195, 449
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	3 cut(s)	70, 196, 563
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp143I	GATC	6 cut(s)	19, 79, 685, 833, 884, 973
Bsp1720I	GCTNAGC	1 cut(s)	954
Bsp68I	TCGCGA	1 cut(s)	612
BspACI	CCGC	2 cut(s)	668, 756
BspANI	GGCC	3 cut(s)	70, 196, 563
BspCNI	CTCAG	4 cut(s)	182, 189, 456, 877
BspFNI	CGCG	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	624, 835, 850
BspMAI	CTGCAG	2 cut(s)	106, 646
BspPI	GGATC	4 cut(s)	828, 841, 892, 968
BspQI	GCTCTTC	2 cut(s)	221, 320
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	493, 764, 852
BssAI	RCCGGY	1 cut(s)	143
BssMI	GATC	6 cut(s)	19, 79, 685, 833, 884, 973
Bst2UI	CCWGG	3 cut(s)	316, 332, 555
Bst4CI	ACNGT	3 cut(s)	266, 587, 902
Bst6I	CTCTTC	4 cut(s)	221, 320, 336, 381
BstC8I	GCNNGC	1 cut(s)	951
BstDEI	CTNAG	5 cut(s)	169, 176, 464, 864, 954
BstF5I	GGATG	2 cut(s)	48, 745
BstFNI	CGCG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	6 cut(s)	22, 82, 688, 836, 887, 976
BstMAI	GTCTC	3 cut(s)	78, 195, 449
BstMBI	GATC	6 cut(s)	19, 79, 685, 833, 884, 973
BstMCI	CGRYCG	2 cut(s)	71, 82
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 220, 677, 955
BstNI	CCWGG	3 cut(s)	316, 332, 555
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	3 cut(s)	314, 330, 553
BstSFI	CTRYAG	2 cut(s)	102, 642
BstUI	CGCG	1 cut(s)	612
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	833, 973
BstYI	RGATCY	2 cut(s)	833, 973
BstZI	CGGCCG	1 cut(s)	68
BsuRI	GGCC	3 cut(s)	70, 196, 563
BtsCI	GGATG	2 cut(s)	48, 745
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	262, 282, 461
BtuMI	TCGCGA	1 cut(s)	612
Cac8I	GCNNGC	1 cut(s)	951
CfoI	GCGC	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	195, 849
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	3 cut(s)	32, 903, 1006
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	1 cut(s)	477
CviQI	GTAC	3 cut(s)	32, 903, 1006
DdeI	CTNAG	5 cut(s)	169, 176, 464, 864, 954
DpnI	GATC	6 cut(s)	21, 81, 687, 835, 886, 975
DpnII	GATC	6 cut(s)	19, 79, 685, 833, 884, 973
DraI	TTTAAA	1 cut(s)	12
DraIII	CACNNNGTG	1 cut(s)	266
DriI	GACNNNNNGTC	1 cut(s)	855
EaeI	YGGCCR	1 cut(s)	68
EagI	CGGCCG	1 cut(s)	68
Eam1104I	CTCTTC	4 cut(s)	221, 320, 336, 381
Eam1105I	GACNNNNNGTC	1 cut(s)	855
EarI	CTCTTC	4 cut(s)	221, 320, 336, 381
EclXI	CGGCCG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	865
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	849
Eco52I	CGGCCG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	626
EcoRII	CCWGG	3 cut(s)	314, 330, 553
EcoRV	GATATC	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	865
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	1 cut(s)	480
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	1 cut(s)	476
FbaI	TGATCA	1 cut(s)	685
FokI	GGATG	2 cut(s)	55, 752
FriOI	GRGCYC	1 cut(s)	865
GlaI	GCGC	1 cut(s)	603
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	70, 196, 563
HapII	CCGG	2 cut(s)	144, 720
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	1 cut(s)	480
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HincII	GTYRAC	3 cut(s)	38, 577, 595
HindII	GTYRAC	3 cut(s)	38, 577, 595
HindIII	AAGCTT	2 cut(s)	872, 936
HinfI	GANTC	2 cut(s)	180, 373
HpaII	CCGG	2 cut(s)	144, 720
HphI	GGTGA	2 cut(s)	158, 503
Hpy166II	GTNNAC	4 cut(s)	38, 282, 577, 595
Hpy188I	TCNGA	6 cut(s)	24, 179, 441, 657, 690, 884
Hpy188III	TCNNGA	3 cut(s)	77, 364, 611
Hpy8I	GTNNAC	4 cut(s)	38, 282, 577, 595
Hpy99I	CGWCG	2 cut(s)	69, 861
HpyAV	CCTTC	2 cut(s)	321, 723
HpyCH4III	ACNGT	3 cut(s)	266, 587, 902
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	7 cut(s)	104, 287, 403, 434, 644, 788, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 220, 677, 955
HpyF3I	CTNAG	5 cut(s)	169, 176, 464, 864, 954
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	480
HspAI	GCGC	1 cut(s)	602
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	6 cut(s)	19, 79, 685, 833, 884, 973
LguI	GCTCTTC	2 cut(s)	221, 320
LmnI	GCTCC	2 cut(s)	61, 722
LweI	GCATC	2 cut(s)	201, 621
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	3 cut(s)	146, 203, 370
MalI	GATC	6 cut(s)	21, 81, 687, 835, 886, 975
MboI	GATC	6 cut(s)	19, 79, 685, 833, 884, 973
MflI	RGATCY	2 cut(s)	833, 973
MhlI	GDGCHC	1 cut(s)	865
MluCI	AATT	4 cut(s)	25, 389, 398, 704
MlyI	GAGTC	2 cut(s)	189, 367
MmeI	TCCRAC	2 cut(s)	432, 680
MnlI	CCTC	9 cut(s)	178, 185, 337, 459, 615, 618, 663, 787, 924
MseI	TTAA	4 cut(s)	11, 396, 501, 1013
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	2 cut(s)	683, 758
MspI	CCGG	2 cut(s)	144, 720
MspR9I	CCNGG	3 cut(s)	316, 332, 555
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	3 cut(s)	316, 332, 555
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	4 cut(s)	93, 220, 677, 955
NdeII	GATC	6 cut(s)	19, 79, 685, 833, 884, 973
NlaIII	CATG	1 cut(s)	480
NlaIV	GGNNCC	3 cut(s)	624, 835, 850
NmeAIII	GCCGAG	2 cut(s)	172, 268
NmuCI	GTSAC	2 cut(s)	146, 370
NruI	TCGCGA	1 cut(s)	612
NspI	RCATGY	1 cut(s)	480
PciI	ACATGT	1 cut(s)	476
PciSI	GCTCTTC	2 cut(s)	221, 320
PctI	GAATGC	1 cut(s)	241
PfoI	TCCNGGA	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	143
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	2 cut(s)	188, 367
PpsI	GAGTC	2 cut(s)	188, 367
PscI	ACATGT	1 cut(s)	476
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	3 cut(s)	314, 330, 553
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	3 cut(s)	314, 330, 553
PspN4I	GGNNCC	3 cut(s)	624, 835, 850
PspPI	GGNCC	2 cut(s)	195, 849
PstI	CTGCAG	2 cut(s)	106, 646
PsuI	RGATCY	2 cut(s)	833, 973
PvuI	CGATCG	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	683
RruI	TCGCGA	1 cut(s)	612
RsaI	GTAC	3 cut(s)	33, 904, 1007
RsaNI	GTAC	3 cut(s)	32, 903, 1006
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	2 cut(s)	221, 320
SaqAI	TTAA	4 cut(s)	11, 396, 501, 1013
Sau3AI	GATC	6 cut(s)	19, 79, 685, 833, 884, 973
Sau96I	GGNCC	2 cut(s)	195, 849
SchI	GAGTC	2 cut(s)	189, 367
ScrFI	CCNGG	3 cut(s)	316, 332, 555
SduI	GDGCHC	1 cut(s)	865
SfaNI	GCATC	2 cut(s)	201, 621
SfcI	CTRYAG	2 cut(s)	102, 642
SinI	GGWCC	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	25, 389, 398, 704
SsiI	CCGC	2 cut(s)	668, 756
StyD4I	CCNGG	3 cut(s)	314, 330, 553
TaaI	ACNGT	3 cut(s)	266, 587, 902
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	4 cut(s)	78, 82, 138, 824
TasI	AATT	4 cut(s)	25, 389, 398, 704
TauI	GCSGC	1 cut(s)	671
Tru1I	TTAA	4 cut(s)	11, 396, 501, 1013
Tru9I	TTAA	4 cut(s)	11, 396, 501, 1013
TscAI	CASTG	3 cut(s)	269, 289, 468
TseFI	GTSAC	2 cut(s)	146, 370
Tsp45I	GTSAC	2 cut(s)	146, 370
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	3 cut(s)	269, 289, 468
VpaK11BI	GGWCC	1 cut(s)	849
XapI	RAATTY	3 cut(s)	25, 389, 704
XceI	RCATGY	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.