Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001494

Physical Location & Seq

Genomic Coordinates Forward (+)

939453 .. 941982

Gene Structure 2530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1008000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGTCTGGTTCAGGTATCTGCGCAAAGCGCGTTGTGGTGGACGCCCGCCACCACATGCTCGGCCGCCTGTCGTCGATCCTCGCCAAGGAGCTGCTCAATGGCCAGAAGGTCGTGGTTGTTCGCGCGGAGGAGATCTGTATCTCCGGTGGGCTGGTGAGGCAGAAGATGAAGTACATGAGGTTCTTGCGTAAGCGCATGAACACCAAGCCTTCTCATGGTCCCATCCACTTCCGCGCCCCTGCTAAGATCCTCTGGCGCACCATCCGTGGGATGATTCCCCATAAGACTAAGCGTGGTGCTGCTGCACTTGCTCGTTTGAAGGCATATGAGGGTATTCCACCTCCATATGACAAGGTTAAGAGGATGGTCATTCCTGATGCACTTAAGGTCTTGAGGCTCCAAGCAGGACACAAGTACTGTTTGCTGGGCAAGCTTTCTTCTGAGGTTGGATGGAACCACTATGAGACCATCAAGGAGCTTGAGAACAAGAGAAAGGAGAGAGCCCAGGTTGCTTATGAGAGGAAGAAACAGTTGAACAAACTGAGGGTGAAAGCAGAAAAGGTTGCTGAGGAGAAACTAGGACCCCATCTTGAGATCATTGCCCCCATTAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

207

Amino Acids

23.51

Weight (kDa)

10.4

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	11 - 115	8.1e-21	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07110 AT3G07110 AT3G24830 AT4G13170 AT5G48760 AT5G48760
fragaria_vesca	FvH4_1g23280 FvH4_1g23310 FvH4_4g15860 FvH4_4g15860
malus_domestica	MD00G1018900.v1.1 MD04G1008000.v1.1 MD05G1175100.v1.1 MD10G1164200.v1.1
prunus_persica	Prupe.1G006700_v2.0.a1 Prupe.1G006700_v2.0.a1 Prupe.8G202800_v2.0.a1
pyrus_communis	pycom04g00590 pycom05g16200 pycom10g14160 pycom13g29610
rosa_chinensis	RchiOBHm_Chr4g0415441 RchiOBHm_Chr6g0284831 RchiOBHm_Chr7g0231251
rosa_laevigata	RLG00000001424 RLG00000008070 RLG00000012712
rosa_multiflora	Rmu_sc0000686.1_g000013 Rmu_sc0003396.1_g000002 Rmu_sc0004076.1_g000027 Rmu_sc0004571.1_g000007 Rmu_sc0034036.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229390 Rroxscaffold_5G00359200 Rroxscaffold_7G00184330
rosa_rugosa	Rorug04G0134300 Rorug06G0167300 Rorug07G0265500
rosa_samantha	Rh4AG194700 Rh4BG193400 Rh4CG205700 Rh4DG192400 Rh6AG280000 Rh6BG280100 Rh6DG275200 Rh7AG419100 Rh7BG394400 Rh7DG412800
rosa_wichuraiana	Rw4G016580 Rw6G024070 Rw7G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	25
AccII	CGCG	4 cut(s)	33, 126, 128, 237
AciI	CCGC	4 cut(s)	49, 67, 128, 235
AclWI	GGATC	2 cut(s)	73, 244
AcoI	YGGCCR	2 cut(s)	64, 103
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	176, 419
AfiI	CCNNNNNNNGG	3 cut(s)	88, 218, 270
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	322, 538
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	94, 436, 481
AluI	AGCT	3 cut(s)	94, 436, 481
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	73, 244
AoxI	GGCC	2 cut(s)	64, 103
ApeKI	GCWGC	3 cut(s)	94, 302, 305
AspLEI	GCGC	6 cut(s)	26, 33, 128, 198, 239, 261
AspS9I	GGNCC	2 cut(s)	221, 584
AsuHPI	GGTGA	2 cut(s)	169, 562
AvaII	GGWCC	2 cut(s)	221, 584
BalI	TGGCCA	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	508
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	81, 289, 292
BccI	CCATC	6 cut(s)	233, 272, 361, 447, 479, 597
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	581
BfrI	CTTAAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	4 cut(s)	67, 95, 303, 306
BlsI	GCNGC	4 cut(s)	68, 96, 304, 307
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	2 cut(s)	221, 584
BmgT120I	GGNCC	2 cut(s)	221, 584
BmiI	GGNNCC	4 cut(s)	223, 401, 458, 586
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	3 cut(s)	415, 503, 614
BsaBI	GATNNNNATC	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	87, 268, 507
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 218, 270
Bse3DI	GCAATG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	3 cut(s)	87, 268, 507
BseGI	GGATG	5 cut(s)	225, 264, 279, 372, 458
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	3 cut(s)	88, 218, 270
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	3 cut(s)	435, 536, 561
BseRI	GAGGAG	2 cut(s)	146, 587
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	3 cut(s)	81, 289, 292
BseYI	CCCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	4 cut(s)	33, 126, 128, 237
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	66, 105
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	3 cut(s)	88, 218, 270
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	66, 105
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	78, 135, 249, 597
BspACI	CCGC	4 cut(s)	49, 67, 128, 235
BspANI	GGCC	2 cut(s)	66, 105
BspCNI	CTCAG	3 cut(s)	436, 537, 562
BspFNI	CGCG	4 cut(s)	33, 126, 128, 237
BspLI	GGNNCC	4 cut(s)	223, 401, 458, 586
BspPI	GGATC	2 cut(s)	73, 244
BspTI	CTTAAG	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	600
BssECI	CCNNGG	3 cut(s)	87, 268, 507
BssMI	GATC	4 cut(s)	78, 135, 249, 597
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	422, 534
BstACI	GRCGYC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	49, 434
BstDEI	CTNAG	5 cut(s)	246, 291, 444, 545, 570
BstDSI	CCRYGG	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	5 cut(s)	225, 264, 279, 372, 458
BstFNI	CGCG	4 cut(s)	33, 126, 128, 237
BstHHI	GCGC	6 cut(s)	26, 33, 128, 198, 239, 261
BstKTI	GATC	4 cut(s)	81, 138, 252, 600
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	4 cut(s)	78, 135, 249, 597
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 160, 311, 433, 512
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	507
BstUI	CGCG	4 cut(s)	33, 126, 128, 237
BstV1I	GCAGC	3 cut(s)	81, 289, 292
BstX2I	RGATCY	2 cut(s)	135, 249
BstYI	RGATCY	2 cut(s)	135, 249
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	66, 105
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	5 cut(s)	225, 264, 279, 372, 458
Cac8I	GCNNGC	2 cut(s)	49, 434
CfoI	GCGC	6 cut(s)	26, 33, 128, 198, 239, 261
Cfr13I	GGNCC	2 cut(s)	221, 584
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	175, 418
CviAII	CATG	4 cut(s)	58, 178, 199, 218
CviJI	RGCY	9 cut(s)	66, 94, 105, 154, 211, 400, 436, 481, 506
CviKI_1	RGCY	9 cut(s)	66, 94, 105, 154, 211, 400, 436, 481, 506
CviQI	GTAC	2 cut(s)	175, 418
DdeI	CTNAG	5 cut(s)	246, 291, 444, 545, 570
DpnI	GATC	4 cut(s)	80, 137, 251, 599
DpnII	GATC	4 cut(s)	78, 135, 249, 597
EaeI	YGGCCR	2 cut(s)	64, 103
EagI	CGGCCG	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	508
Eco31I	GGTCTC	1 cut(s)	461
Eco47I	GGWCC	2 cut(s)	221, 584
Eco52I	CGGCCG	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	4 cut(s)	61, 181, 202, 221
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	4 cut(s)	57, 177, 198, 217
FauI	CCCGC	1 cut(s)	56
FauNDI	CATATG	2 cut(s)	328, 349
Fnu4HI	GCNGC	4 cut(s)	67, 95, 303, 306
FokI	GGATG	5 cut(s)	212, 251, 286, 379, 465
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	4 cut(s)	67, 95, 303, 306
FspBI	CTAG	1 cut(s)	581
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	6 cut(s)	25, 32, 127, 197, 238, 260
GluI	GCNGC	4 cut(s)	67, 95, 303, 306
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	66, 105
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	6 cut(s)	26, 33, 128, 198, 239, 261
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	4 cut(s)	61, 181, 202, 221
Hin6I	GCGC	6 cut(s)	24, 31, 126, 196, 237, 259
HinP1I	GCGC	6 cut(s)	24, 31, 126, 196, 237, 259
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	2 cut(s)	169, 562
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	3 cut(s)	377, 394, 593
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	103, 222, 316
HpyCH4III	ACNGT	2 cut(s)	422, 534
HpyCH4V	TGCA	2 cut(s)	308, 383
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 160, 311, 433, 512
HpyF3I	CTNAG	5 cut(s)	246, 291, 444, 545, 570
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	61, 181, 202, 221
HspAI	GCGC	6 cut(s)	24, 31, 126, 196, 237, 259
Kzo9I	GATC	4 cut(s)	78, 135, 249, 597
LmnI	GCTCC	3 cut(s)	91, 405, 478
Lsp1109I	GCAGC	3 cut(s)	81, 289, 292
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	581
MalI	GATC	4 cut(s)	80, 137, 251, 599
MboI	GATC	4 cut(s)	78, 135, 249, 597
MboII	GAAGA	3 cut(s)	178, 432, 538
MflI	RGATCY	2 cut(s)	135, 249
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	430
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	3 cut(s)	360, 387, 612
Msp20I	TGGCCA	1 cut(s)	105
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	4 cut(s)	33, 126, 128, 237
MwoI	GCNNNNNNNGC	5 cut(s)	30, 160, 311, 433, 512
NdeI	CATATG	2 cut(s)	328, 349
NdeII	GATC	4 cut(s)	78, 135, 249, 597
NlaIII	CATG	4 cut(s)	61, 181, 202, 221
NlaIV	GGNNCC	4 cut(s)	223, 401, 458, 586
NmeAIII	GCCGAG	1 cut(s)	42
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	4 cut(s)	68, 96, 304, 307
PpuMI	RGGWCCY	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	507
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	4 cut(s)	223, 401, 458, 586
PspPI	GGNCC	2 cut(s)	221, 584
PspPPI	RGGWCCY	1 cut(s)	584
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
PsuI	RGATCY	2 cut(s)	135, 249
RsaI	GTAC	2 cut(s)	176, 419
RsaNI	GTAC	2 cut(s)	175, 418
SaqAI	TTAA	3 cut(s)	360, 387, 612
SatI	GCNGC	4 cut(s)	67, 95, 303, 306
Sau3AI	GATC	4 cut(s)	78, 135, 249, 597
Sau96I	GGNCC	2 cut(s)	221, 584
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	1 cut(s)	370
SinI	GGWCC	2 cut(s)	221, 584
SmlI	CTYRAG	4 cut(s)	386, 394, 482, 593
SmoI	CTYRAG	4 cut(s)	386, 394, 482, 593
SsiI	CCGC	4 cut(s)	49, 67, 128, 235
SspI	AATATT	1 cut(s)	617
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	422, 534
TaqI	TCGA	1 cut(s)	77
TatI	WGTACW	2 cut(s)	174, 417
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	3 cut(s)	360, 387, 612
Tru9I	TTAA	3 cut(s)	360, 387, 612
TseI	GCWGC	3 cut(s)	94, 302, 305
TspDTI	ATGAA	2 cut(s)	185, 215
TspGWI	ACGGA	1 cut(s)	257
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	221, 584
XagI	CCTNNNNNAGG	1 cut(s)	86
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	1 cut(s)	581
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.