AT3G07890

Growth hormone-regulated TBC protein 1-A-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
2516271 .. 2519545
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07890.1

Sequence Viewer

Length: 1203 bp
ATGTTTGGGATCCAAAGCAGACGTGATTTAACGATGGAGCTACAATCTCAGATTCCGATTCTCCGTCCAAGCATCCACGCAAGACGAGCCAACATCGTCGTTAAATTCCAGGACTTGTACGGGTTCACGGTGGAAGGAAATGTCGACGACGTTAATGTGTTGAACGAGGTTAGAGAGAAAGTCAGGAATCAAGGACGAGTTTGGTGGGCTCTTGAAGCTAGCAAAGGAGCTAATTGGTATCTTCAGCCGGAGATTCTCTTGATCGGTGACGGTATCGCTTTGAAAACTTCTCTCAAGCTCTCCACTTTGACTAATGCGATTACGTTGAAGAGATTGATTCGGAAAGGGATCCCTCCTGTGCTTAGACCTAAGGTTTGGTTTTCTCTTTCTGGTGCTGCTAAGAAGAAATCCACCGTCCCAGAGAGTTATTATAGTGATTTGACCAAAGCCGTCGAAGGGATGGTCACGCCGGCTACGAGGCAGATTGATCATGATCTGCCACGTACTTTCCCAGGCCATCCATGGTTGGACACTCCAGAAGGTCATGCTGCTCTACGACGTGTGCTTGTTGGGTATTCCTTTCGTGATTCAGATGTTGGCTATTGTCAGGGTCTAAACTACGTTGCAGCGTTACTATTACTTGTCATGAAGACAGAAGAAGACGCATTCTGGATGCTAGCGGTCCTTTTGGAAAACGTATTAGTCCGTGATTGTTACACAACCAACTTATCTGGATGTCATGTTGAGCAGCGGGTTTTCAAAGATTTGCTTGCCCAAAAATGTTCTCGAATAGCTACTCATCTTGAAGATATGGGCTTTGATGTTTCCCTTGTAGCCACTGAATGGTTTCTATGCCTCTTCTCTAAAAGCCTTCCTTCAGAGACAACTCTAAGGGTGTGGGATGTACTTTTCTATGAAGGAGCGAAGGTTCTATTCCATGCAGCTTTAGCAATATTCAAGATGAAAGAGAACGAGCTGCTTATGACCCACCAGGTCGGCGATGTTATCAACATATTACAGAAAACTTCACACCAGCTTTTTGACCCGGATGAATTATTAACGGTGGCATTTGAGAAAATCGGATCAATGACTACCAACACGATATCAAAGCAGAGGAAGAAGCAGGAACCAGCAGTGATGGCAGAACTTGACCAGAGACTTCGGAGACTTAACTCTCTTAAAGAAAGTGGGAAGAGCACATAA

Protein Analysis

400

Amino Acids

45.32

Weight (kDa)

8.8

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 121 - 327 3.6e-57 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 184 - 347 9.4e-32 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 843
AccI GTMKAC 1 cut(s) 144
AciI CCGC 2 cut(s) 680, 751
AclWI GGATC 5 cut(s) 4, 17, 343, 356, 1090
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 2 cut(s) 227, 861
AfaI GTAC 3 cut(s) 119, 505, 906
AfiI CCNNNNNNNGG 2 cut(s) 456, 843
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 7 cut(s) 163, 215, 283, 328, 760, 806, 958
AjiI CACGTC 2 cut(s) 23, 560
AjnI CCWGG 3 cut(s) 108, 511, 990
AloI GAACNNNNNNTCC 2 cut(s) 912, 944
AluBI AGCT 8 cut(s) 40, 218, 230, 298, 794, 944, 976, 1036
AluI AGCT 8 cut(s) 40, 218, 230, 298, 794, 944, 976, 1036
Alw21I GWGCWC 1 cut(s) 1199
Alw26I GTCTC 3 cut(s) 875, 1150, 1159
AlwI GGATC 5 cut(s) 4, 17, 343, 356, 1090
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 6 cut(s) 395, 548, 626, 748, 941, 976
ApoI RAATTY 1 cut(s) 104
ArsI GACNNNNNNTTYG 4 cut(s) 357, 389, 447, 479
Asp700I GAANNNNTTC 1 cut(s) 846
AspS9I GGNCC 1 cut(s) 682
AsuC2I CCSGG 1 cut(s) 1046
AsuHPI GGTGA 1 cut(s) 278
AsuNHI GCTAGC 2 cut(s) 218, 676
AvaII GGWCC 1 cut(s) 682
AxyI CCTNAGG 1 cut(s) 369
BamHI GGATCC 2 cut(s) 9, 348
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 2 cut(s) 656, 666
Bbv12I GWGCWC 1 cut(s) 1199
BbvI GCAGC 6 cut(s) 382, 535, 638, 760, 953, 963
BccI CCATC 4 cut(s) 28, 454, 525, 1132
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 3 cut(s) 110, 513, 992
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 1 cut(s) 1046
BcoDI GTCTC 3 cut(s) 875, 1150, 1159
BfaI CTAG 2 cut(s) 219, 677
BisI GCNGC 6 cut(s) 396, 549, 627, 749, 942, 977
BlsI GCNGC 6 cut(s) 397, 550, 628, 750, 943, 978
Bme1390I CCNGG 4 cut(s) 110, 513, 992, 1046
Bme18I GGWCC 1 cut(s) 682
BmgBI CACGTC 2 cut(s) 23, 560
BmgT120I GGNCC 1 cut(s) 682
BmiI GGNNCC 3 cut(s) 11, 350, 1128
BmrFI CCNGG 4 cut(s) 110, 513, 992, 1046
BmsI GCATC 2 cut(s) 81, 663
BmtI GCTAGC 2 cut(s) 222, 680
BpiI GAAGAC 2 cut(s) 656, 666
BpmI CTGGAG 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 1046
BsaAI YACGTR 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 2 cut(s) 511, 521
BsaXI ACNNNNNCTCC 2 cut(s) 912, 942
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 843
Bse118I RCCGGY 1 cut(s) 469
Bse21I CCTNAGG 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 3 cut(s) 110, 513, 992
BseDI CCNNGG 2 cut(s) 511, 521
BseGI GGATG 7 cut(s) 72, 465, 517, 678, 740, 907, 1054
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 2 cut(s) 456, 843
BseMII CTCAG 1 cut(s) 62
BseXI GCAGC 6 cut(s) 382, 535, 638, 760, 953, 963
BshFI GGCC 1 cut(s) 516
BsiHKAI GWGCWC 1 cut(s) 1199
BsiSI CCGG 3 cut(s) 248, 470, 1046
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 456, 843
BsmAI GTCTC 3 cut(s) 875, 1150, 1159
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 665
BsnI GGCC 1 cut(s) 516
Bsp1286I GDGCHC 2 cut(s) 211, 1199
Bsp143I GATC 6 cut(s) 9, 261, 348, 487, 493, 1082
Bsp19I CCATGG 1 cut(s) 521
BspACI CCGC 2 cut(s) 680, 751
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 1 cut(s) 61
BspHI TCATGA 2 cut(s) 490, 645
BspLI GGNNCC 3 cut(s) 11, 350, 1128
BspOI GCTAGC 2 cut(s) 222, 680
BspPI GGATC 5 cut(s) 4, 17, 343, 356, 1090
BspQI GCTCTTC 1 cut(s) 1187
BsrFI RCCGGY 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 511, 521
BssMI GATC 6 cut(s) 9, 261, 348, 487, 493, 1082
BssT1I CCWWGG 1 cut(s) 521
Bst2UI CCWGG 3 cut(s) 110, 513, 992
Bst4CI ACNGT 4 cut(s) 130, 272, 415, 1063
Bst6I CTCTTC 3 cut(s) 323, 863, 1187
BstBAI YACGTR 1 cut(s) 503
BstC8I GCNNGC 4 cut(s) 220, 471, 678, 771
BstDEI CTNAG 5 cut(s) 48, 362, 369, 399, 890
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 7 cut(s) 72, 465, 517, 678, 740, 907, 1054
BstKTI GATC 6 cut(s) 12, 264, 351, 490, 496, 1085
BstMAI GTCTC 3 cut(s) 875, 1150, 1159
BstMBI GATC 6 cut(s) 9, 261, 348, 487, 493, 1082
BstMWI GCNNNNNNNGC 4 cut(s) 86, 215, 947, 1139
BstNI CCWGG 3 cut(s) 110, 513, 992
BstSCI CCNGG 4 cut(s) 108, 511, 990, 1044
BstV1I GCAGC 6 cut(s) 382, 535, 638, 760, 953, 963
BstV2I GAAGAC 2 cut(s) 656, 666
BstX2I RGATCY 2 cut(s) 9, 348
BstYI RGATCY 2 cut(s) 9, 348
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 521
BtgZI GCGATG 1 cut(s) 1014
BtrI CACGTC 2 cut(s) 23, 560
BtsCI GGATG 7 cut(s) 72, 465, 517, 678, 740, 907, 1054
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 2 cut(s) 837, 1140
Cac8I GCNNGC 4 cut(s) 220, 471, 678, 771
CciI TCATGA 2 cut(s) 490, 645
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 682
CseI GACGC 1 cut(s) 671
CsiI ACCWGGT 1 cut(s) 990
Csp6I GTAC 3 cut(s) 118, 504, 905
CviAII CATG 6 cut(s) 491, 522, 545, 646, 740, 938
CviQI GTAC 3 cut(s) 118, 504, 905
DdeI CTNAG 5 cut(s) 48, 362, 369, 399, 890
DpnI GATC 6 cut(s) 11, 263, 350, 489, 495, 1084
DpnII GATC 6 cut(s) 9, 261, 348, 487, 493, 1082
Eam1104I CTCTTC 3 cut(s) 323, 863, 1187
EarI CTCTTC 3 cut(s) 323, 863, 1187
Eco130I CCWWGG 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 211
Eco32I GATATC 1 cut(s) 1104
Eco47I GGWCC 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 227, 861
Eco81I CCTNAGG 1 cut(s) 369
EcoRII CCWGG 3 cut(s) 108, 511, 990
EcoRV GATATC 1 cut(s) 1104
EcoT14I CCWWGG 1 cut(s) 521
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 6 cut(s) 494, 525, 548, 649, 743, 941
FalI AAGNNNNNCTT 4 cut(s) 753, 785, 859, 891
FaqI GGGAC 1 cut(s) 401
FatI CATG 6 cut(s) 490, 521, 544, 645, 739, 937
FauI CCCGC 1 cut(s) 744
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 6 cut(s) 396, 549, 627, 749, 942, 977
FokI GGATG 7 cut(s) 59, 472, 504, 685, 747, 914, 1061
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 6 cut(s) 396, 549, 627, 749, 942, 977
FspBI CTAG 2 cut(s) 219, 677
GluI GCNGC 6 cut(s) 396, 549, 627, 749, 942, 977
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 1 cut(s) 516
HapII CCGG 3 cut(s) 248, 470, 1046
HgaI GACGC 1 cut(s) 671
Hin1II CATG 6 cut(s) 494, 525, 548, 649, 743, 941
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 6 cut(s) 52, 58, 187, 253, 337, 587
HpaII CCGG 3 cut(s) 248, 470, 1046
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 126, 145
Hpy188I TCNGA 7 cut(s) 51, 57, 342, 592, 880, 1082, 1164
Hpy8I GTNNAC 2 cut(s) 126, 145
Hpy99I CGWCG 5 cut(s) 101, 149, 152, 455, 561
HpyAV CCTTC 7 cut(s) 128, 449, 533, 881, 885, 911, 919
HpyCH4III ACNGT 4 cut(s) 130, 272, 415, 1063
HpyCH4IV ACGT 7 cut(s) 22, 150, 323, 502, 559, 621, 696
HpyCH4V TGCA 2 cut(s) 626, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 215, 947, 1139
HpyF3I CTNAG 5 cut(s) 48, 362, 369, 399, 890
HpySE526I ACGT 7 cut(s) 22, 150, 323, 502, 559, 621, 696
Hsp92II CATG 6 cut(s) 494, 525, 548, 649, 743, 941
KroI GCCGGC 1 cut(s) 469
KroNI GCCGGC 1 cut(s) 471
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 6 cut(s) 9, 261, 348, 487, 493, 1082
LguI GCTCTTC 1 cut(s) 1187
LmnI GCTCC 3 cut(s) 37, 227, 920
Lsp1109I GCAGC 6 cut(s) 382, 535, 638, 760, 953, 963
LweI GCATC 2 cut(s) 81, 663
MabI ACCWGGT 1 cut(s) 990
MaeI CTAG 2 cut(s) 219, 677
MaeII ACGT 7 cut(s) 22, 150, 323, 502, 559, 621, 696
MaeIII GTNAC 4 cut(s) 266, 463, 630, 713
MalI GATC 6 cut(s) 11, 263, 350, 489, 495, 1084
MboI GATC 6 cut(s) 9, 261, 348, 487, 493, 1082
MboII GAAGA 9 cut(s) 233, 340, 415, 661, 668, 671, 818, 850, 1129
MflI RGATCY 2 cut(s) 9, 348
MhlI GDGCHC 2 cut(s) 211, 1199
MluCI AATT 3 cut(s) 104, 232, 1052
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 5 cut(s) 160, 363, 471, 866, 1107
MroNI GCCGGC 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 846
MseI TTAA 6 cut(s) 29, 102, 153, 1058, 1170, 1179
MspA1I CMGCKG 1 cut(s) 751
MspI CCGG 3 cut(s) 248, 470, 1046
MspR9I CCNGG 4 cut(s) 110, 513, 992, 1046
Mva1269I GAATGC 1 cut(s) 665
MvaI CCWGG 3 cut(s) 110, 513, 992
MwoI GCNNNNNNNGC 4 cut(s) 86, 215, 947, 1139
NaeI GCCGGC 1 cut(s) 471
NciI CCSGG 1 cut(s) 1046
NcoI CCATGG 1 cut(s) 521
NdeII GATC 6 cut(s) 9, 261, 348, 487, 493, 1082
NgoMIV GCCGGC 1 cut(s) 469
NheI GCTAGC 2 cut(s) 218, 676
NlaIII CATG 6 cut(s) 494, 525, 548, 649, 743, 941
NlaIV GGNNCC 3 cut(s) 11, 350, 1128
NmuCI GTSAC 2 cut(s) 266, 463
PagI TCATGA 2 cut(s) 490, 645
PciSI GCTCTTC 1 cut(s) 1187
PcsI WCGNNNNNNNCGW 1 cut(s) 473
PctI GAATGC 1 cut(s) 665
PdiI GCCGGC 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 6 cut(s) 52, 58, 187, 253, 337, 587
PflMI CCANNNNNTGG 1 cut(s) 843
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 6 cut(s) 397, 550, 628, 750, 943, 978
Ppu21I YACGTR 1 cut(s) 503
Psp6I CCWGG 3 cut(s) 108, 511, 990
PspGI CCWGG 3 cut(s) 108, 511, 990
PspN4I GGNNCC 3 cut(s) 11, 350, 1128
PspPI GGNCC 1 cut(s) 682
PsuI RGATCY 2 cut(s) 9, 348
RsaI GTAC 3 cut(s) 119, 505, 906
RsaNI GTAC 3 cut(s) 118, 504, 905
SalI GTCGAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 1187
SaqAI TTAA 6 cut(s) 29, 102, 153, 1058, 1170, 1179
SatI GCNGC 6 cut(s) 396, 549, 627, 749, 942, 977
Sau3AI GATC 6 cut(s) 9, 261, 348, 487, 493, 1082
Sau96I GGNCC 1 cut(s) 682
ScrFI CCNGG 4 cut(s) 110, 513, 992, 1046
SduI GDGCHC 2 cut(s) 211, 1199
SexAI ACCWGGT 1 cut(s) 990
SfaNI GCATC 2 cut(s) 81, 663
SinI GGWCC 1 cut(s) 682
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 3 cut(s) 104, 232, 1052
SsiI CCGC 2 cut(s) 680, 751
SspI AATATT 1 cut(s) 954
SspMI CTAG 2 cut(s) 219, 677
StyD4I CCNGG 4 cut(s) 108, 511, 990, 1044
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 4 cut(s) 130, 272, 415, 1063
TaiI ACGT 7 cut(s) 25, 153, 326, 505, 562, 624, 699
TaqI TCGA 3 cut(s) 144, 453, 787
TasI AATT 3 cut(s) 104, 232, 1052
TatI WGTACW 1 cut(s) 904
TfiI GAWTC 6 cut(s) 52, 58, 187, 253, 337, 587
Tru1I TTAA 6 cut(s) 29, 102, 153, 1058, 1170, 1179
Tru9I TTAA 6 cut(s) 29, 102, 153, 1058, 1170, 1179
TscAI CASTG 2 cut(s) 844, 1140
TseFI GTSAC 2 cut(s) 266, 463
TseI GCWGC 6 cut(s) 395, 548, 626, 748, 941, 976
Tsp45I GTSAC 2 cut(s) 266, 463
TspDTI ATGAA 4 cut(s) 662, 930, 977, 1065
TspGWI ACGGA 2 cut(s) 53, 695
TspRI CASTG 2 cut(s) 844, 1140
Van91I CCANNNNNTGG 1 cut(s) 843
VpaK11BI GGWCC 1 cut(s) 682
XapI RAATTY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 846
XspI CTAG 2 cut(s) 219, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.